TCONS_00067243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067243
Unique NameTCONS_00067243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067243 ID=TCONS_00067243|Name=TCONS_00067243|organism=Clytia hemisphaerica|type=transcript|length=2529bp
AAATACCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGcgataaaaa
aagaacagaaaaacaagaaattatttaaaaaaacagcTACAATGGCCAGC
ATCAATTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAATTAGT
TCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAG
ACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCA
ATGGATTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTTTGTGC
TGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCA
ACAAAATTGACTgtTCGGAGTTGGATGATTTACTCTTAGTTACAAATACG
CTTAAGCTAAAATCATTCAAATTACATTTAATCGAACATATGAAGACAGA
ATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAagtttttc
atgctgctcaaaAGTATGAATTGACTACATTAATTGAAACAATTAGATTA
AGGTCTCTGCGCATCTTAGATTTGGCTAGAAGCCAACGTACATTATACCT
CGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAA
CATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTT
CAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAG
ATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATT
TCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTgagaacaa
agaaattcatgTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCA
AAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATT
GAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCT
ACACACACTTCAAGATATTAAAGATGACACTAATATTTGGGCTCTGGCAC
CTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAACAAAATACAGTCC
TTCATACGAAATTGTGCTAGAAANATACCTCGCTGGAGAAAATATATCGA
TGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAATATCAACAATGA
TCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAATTATTCACAAAT
TTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTAACCCACCAGATT
CATGAGCACTTTATTGATTATGAGTCAATTTCCTACAAAAAGGGTTTTCC
AAATTGTGTCGTCTTGGACGTTgagaacaaagaaattcatgTCAGTTCGT
ATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATGTTGAGTTCGACA
AATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTGGCAAGAAATT
CAATGAAGTTGTCTACTTCCTTCAATTTCTACACACACTTCAAGATATTA
AAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAA
GTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTAC
AAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGC
ATTTTGGTATTGAAGTAGAAAggagtttggtttctaaactcTTAAGAGGG
TTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAAT
GCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTC
TGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACC
CGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGA
CGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAA
ATGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCCAGATTCTAT
TATATTAACTAAAagttctgttttatttaccatgcattgggcttttccag
aaaaaaaccgcacaccccctgttgaggaggtctatCCCTTtatggctgga
aatgctgtaaaccccctggaattccaggaaattttagatttaaacCCCTC
TGAAATTCTTAaatttagtaggatttaaaaagctaccacatggaattcca
gttatttttgacagatttttgtatctccctatggaattccaccacatata
tcaaaccttacccccttggaacgaaagtggacctcctcaacaggggtttt
ttttctggaaaaacccatTCTTAAAATGATTCTgtccctttttttgaaaa
tactttttattAAATCATTGtgatcattttttaaataaaaaacttatTGC
CTCATTTCTTGccttttttggacattttttaaaattgatgtttttgtttt
ttgtccATAACTTCTGAACTAATAaagca
Run BLAST on NCBI

transcript from alignment at scaffold_466:478054..481276-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067243 ID=TCONS_00067243|Name=TCONS_00067243|organism=Clytia hemisphaerica|type=transcript|length=3223bp|location=Sequence derived from alignment at scaffold_466:478054..481276- (Clytia hemisphaerica)
AAATACCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGCGATAAAAA
AAGAACAGAAAAACAAGAAATTATTTAAAAAAACAGCTACAATGGCCAGC
ATCAATTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAATTAGT
TCCGTTCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAG
ACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCA
ATGGATTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTTTGTGC
TGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCA
ACAAAATTGACTGTAAGTTTCGACTCTTTTCGCATTTTGTAAGTATCAAT
CAAAAGCCATACCGTATTGCTTTGAATAAACGCCCCGGGTGTGTTTAAAG
GTGGCGTTCATCGAAAATCTTTCCTTAAATTAGTAGCTACAAGATAGGCC
GATTCGCGAAATTCTATCCACTCGAAAAATTTTGATCTTCGATTCGCGAA
AAAAAGTCCACGTGAAAATTAAAGATCAGCGACTTTAAGGTAGTACCAAG
AAGGCTATTTTAGTTTAAAGCTATAGAAGGTGCCAAGAGATTCTCATATT
TTTATTTCTCATACAAATATGTTTTAATACTTTGGATTTTTTGTATTTTT
AGGTTCGGAGTTGGATGATTTACTCTTAGTTACAAATACGCTTAAGCTAA
AATCATTCAAATTACATTTAATCGAACATATGAAGACAGAATACGTATCA
AAGTCAAAGCAATTTGATGAGAATTTACTGCAAGTTTTTCATGCTGCTCA
AAAGTATGAATTGACTACATTAATTGAAACAATTAGATTAAGGTCTCTGC
GCATCTTAGATTTGGCTAGAAGCCAACGTACATTATACCTCGCTGGAGAA
AATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAATA
TCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAATT
ATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTAAC
CCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATTTCCTACAAAA
AGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGAAATTCAT
GTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATGTT
GAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTG
GCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACACACACTT
CAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAACTTATCG
TTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAAATTACTT
CTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAAATTTCCT
TCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATGACACTAA
TATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCT
CCAACAAAATACAGTCCTTCATACGAAATTGTGCTAGAAANATACCTCGC
TGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAACAT
GTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAA
ATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATT
TCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATTTCC
TACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGA
AATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAG
CAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAA
CTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACA
CACACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAA
CTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAA
ATTACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAA
ATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATG
ACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGAT
TGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTACAAACAG
AACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGCATTTTG
GTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTCTTAAGAGGGTTCCAA
AATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATGCAAGT
TTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCTGATTG
ATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACCCGAGAG
AAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGACGTTGT
TTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAAATGCAT
AATGGCATACATAATCACAATTTTTTGTTTGTGCCAGATTCTATTATATT
AACTAAAAGTTCTGTTTTATTTACCATGCATTGGGCTTTTCCAGAAAAAA
ACCGCACACCCCCTGTTGAGGAGGTCTATCCCTTTATGGCTGGAAATGCT
GTAAACCCCCTGGAATTCCAGGAAATTTTAGATTTAAACCCCTCTGAAAT
TCTTAAATTTAGTAGGATTTAAAAAGCTACCACATGGAATTCCAGTTATT
TTTGACAGATTTTTGTATCTCCCTATGGAATTCCACCACATATATCAAAC
CTTACCCCCTTGGAACGAAAGTGGACCTCCTCAACAGGGGTTTTTTTTCT
GGAAAAACCCATTCTTAAAATGATTCTGTCCCTTTTTTTGAAAATACTTT
TTATTAAATCATTGTGATCATTTTTTAAATAAAAAACTTATTGCCTCATT
TCTTGCCTTTTTTGGACATTTTTTAAAATTGATGTTTTTGTTTTTTGTCC
ATAACTTCTGAACTAATAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042004XLOC_042004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067243-exon-scaffold_466-1575043694:480915..481276TCONS_00067243-exon-scaffold_466-1575043694:480915..481276Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1575043694:479914..480574TCONS_00067243-exon-scaffold_466-1575043694:479914..480574Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1575043694:479207..479736TCONS_00067243-exon-scaffold_466-1575043694:479207..479736Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1575043694:478054..479029TCONS_00067243-exon-scaffold_466-1575043694:478054..479029Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1510915933:480915..481276TCONS_00067243-exon-scaffold_466-1510915933:480915..481276Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1510915933:479914..480574TCONS_00067243-exon-scaffold_466-1510915933:479914..480574Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1510915933:479207..479736TCONS_00067243-exon-scaffold_466-1510915933:479207..479736Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1510915933:478054..479029TCONS_00067243-exon-scaffold_466-1510915933:478054..479029Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1491911889:480915..481276TCONS_00067243-exon-scaffold_466-1491911889:480915..481276Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1491911889:479914..480574TCONS_00067243-exon-scaffold_466-1491911889:479914..480574Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1491911889:479207..479736TCONS_00067243-exon-scaffold_466-1491911889:479207..479736Clytia hemisphaericaexon
TCONS_00067243-exon-scaffold_466-1491911889:478054..479029TCONS_00067243-exon-scaffold_466-1491911889:478054..479029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:478054..481276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.100173	0	0.287776	0.297604	0	0.169257	0	0.0510797	0.0487955	0	0.0809816	0.0890596	0.203967	0.0623889	0	0	0	0	0	0	0.296604	0.0768664	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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