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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067022 ID=TCONS_00067022|Name=TCONS_00067022|organism=Clytia hemisphaerica|type=transcript|length=1399bp ACTGGGAAAGGTTGAAGGCAGCAGATCTCATACCTTAAATCTACCTTGGA GACATCCGGCAGTACAAGCCGCAATTTCCAGACACAGTGCTGCATTGTCC TGTTGTCCAGTGCAGTTTAGTCCATTTAGTCCAGCATCTCCAGCATCAcg agattttttgttttaatctaTCATCAAAATGATCCGGGCAATATTAGATA GCTAAAAAATCTACTGactttttcaattaaaaagatCGAAATTGAACAAG GGTTAGCTTTCCGATATGAAAATATTCCAGTGATAAAGAGAGTTCACCGC CTAGGTTGTGCTACTTTCCGGATCAGATTTAAAGGACCGGATCGCAATTT TTTGTTATAGTCCACGGAACGCGCCGTAACTTTCCTTCAAGACttcatat caaaatcaaaatgGCCAAGCGCACCAAAAAGGTTGGCATTACTGGTAAAT ATGGTACCAGATATGGTGCTTCACTCAGAAAGATGGCCAAGAAAATCGAA GTCAGTCAACATGCCAAATATACCTGCAACTTCTGTGGaaagGATTCCTT GAAAAGAGATGCTGTGGGCATCTGGAAATGTAAAGGATGCAGAAAAACTA TTGCTGGTGGAGCATGGGCACCAAACACATCCGCAGCTGTTACAGTCAGA AGTGCTATCCGTCGTCTACGTGAATTACAAGAAATATAAATTTCGATCAT TTACAATAACATTTGTGTCATTTATATCGACTTCTCTACTCCTGATACTA TCACGTAGATACTGTTgagcttaaccctattcatcATACTAGACTTTTTG TAacccaccccttaacttttgaactagttggtctttttggatgaaatttg tgaggtagattcgctggagttaggtattcggtagtcgggattcgaaaaag ctcaataaaaacttaacgaaaaaagatattaacttgaaataaaaaacgga tgcaagcacacatactaaggaataaatcccaataaaaaaaattcagaatg tgagctcagttgtcacgtgactatgggaaattcccctattcgggattcaa atcatGTCAGGGACCTTTCTTCAAAAACTCGCCAGTCATCAAGGAAtagt tggattgacttcaaataaaaaacggatgcaagttcacatgtcaaggaaaa tattccaaacaaaaaaattcagaatatgagcttagttgtcacgtgactat gggaaattcccctatttgggagttatttcaatttagagaccatttttaaa aagcttaccagtcataaggaaatggttggattgacttcaaataacaaacg gatgcaagttcacatgtcaagaaaaacattccaaaaaagaaaattcagaa tatgagcttagttgtcacgtgactatgggaaattccccttttcaagagt Run BLAST on NCBI transcript from alignment at scaffold_462:907496..916048- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067022 ID=TCONS_00067022|Name=TCONS_00067022|organism=Clytia hemisphaerica|type=transcript|length=8553bp|location=Sequence derived from alignment at scaffold_462:907496..916048- (Clytia hemisphaerica) ACTGGGAAAGGTTGAAGGCAGCAGATCTCATACCTTAAATCTACCTTGGA
GACATCCGGCAGTACAAGCCGCAATTTCCAGACACAGTGCTGCATTGTCC
TGTTGTCCAGTGCAGTTTAGTCCATTTAGTCCAGCATCTCCAGCATCACG
AGATTTTTTGTTTTAATCTATCATCAAAATGATCCGGGCAATATTAGATA
GCTAAAAAATCTACTGACTTTTTCAATTAAAAAGATCGAAATTGAACAAG
GGTTAGCTTTCCGATATGAAAATATTCCAGTGATAAAGAGAGTTCACCGC
CTAGGTTGTGCTACTTTCCGGATCAGATTTAAAGGACCGGATCGCAATTT
TTTGTTATAGTCCACGGAACGCGCCGTAACTTTCCTTCAAGACTTCATAT
CAAAATCAAAATGGTGGGTGAAGACATATTTACAAATCCAAATCTCATGA
AAATCTACTAGAATCTCGACGATCGTGTATTTGTTTTGCTCACTGAGGCT
GGTTTGGCAGCAACTGACCTTTATTTAACCTTTTTCTGAGGAAAGTTTTC
TATATCATTTATGAGTAGTTGTTTTTATTGGAGGATGAGCTCACGGATTT
TTCGATTTTTTTACAGGCCAAGCGCACCAAAAAGGTTGGCATTACTGGTA
AATATGGTACCAGATATGGTGCTTCACTCAGAAAGATGGCCAAGAAAATC
GAAGTCAGTCAACATGCCAAATATACCTGCAACTTCTGTGGAAAGGTATA
TCATCAAAATTATAATGATAAGGCCACAATCACATATAACTTGTGTTCGC
TTTGTTTTTAGTTGGAAAAAAATTAGCTGGTCAGTCAACAAAAAATTTCA
AAATAAGCTTTGAAAACCTATCAGGACCAATTTTGTTTTAATTGGATTTG
GACAGTTTAAGTTTGCATTTGGCTAAAGCTTCAGATGCATCCGGCTGGAC
TTAGAATTTTTTTCAAGTTGAATAGTGACCAAAGGGGGTCTCGAACCGGG
AACCTATAGGTTCCGAAANNCGTTATTTGGGGTTACTTATACGAAGGTCT
TAGTACTATATATAAATAAGTCTGACTGACGAGTTAGGCTAACTGTTATG
ATCGCCATTACTCCGAAGAATCCACCACACGTGTGCACCGCCGACCGGGT
GAGGTAACCCTATACTACGCGCTCCGTGTGGTATATGCGTGCGGCCCGCA
CAGCCGGATGCATCTGAAGCATTAGCCGAATCTGTTTGTTTAAGGTGACA
AGTCCAGAAGCCGAATCCATAAGTTACCTCCACATCCCCAACCATGATAG
GGTGACCACCCCAGACCACCCACCTATGTCTTCATTTTTCCTTGTATATC
GCGTGTAATAATCACTTGTGGTTTTAGTTAACACATGTGCATTGTATGTG
ATGTAGAACATTTATATTAGCATTACGCAATGGTTTTTTCCAAATATGGT
AATACAAGATTTCGCATTGAACTGACCACGTGCATTTGCGTAGGGTAAAA
TGGCGAAATGCGAAAATCGATTTTGGCAAAATTTTTTTGAAAAATGACCC
TACAAGATTTGACTATCTTTTTATTCCATGAAGAGATTACTTTCAAATAA
AAATATATTGACAATGAATGGGTAAGCAGCTTTCTAGAAATCCAAACATA
AGTTGCATAGCTTTTCACTTCAGGATTAAAAACAGTCAAAAACCAGCTTT
TTCCAATTTTCTTCGAGTTACAGGAATTAATTCCTTGTTTGTTTTGATCT
GAAATTTTCAGTAGGGTAGGACAACATGGTTCCCTTGCTCATATCAGGGG
GGGGTGAGACGGGGGTAAGAGAATTAAAGTTTCTAAGTAAAATCTTAATT
ATCACCCAAAAAAGTGCCTTTTTTTGTCCATATCTTTTAAATAGATTGTC
CCAGCCTTATCCCTCTTTCAGTAAAGCTTCCTATACATTTTGTCCTTCAG
AAAAACCAAAAATATTGGCCTTAATTGCTTGCTTTCAGTTCCTGTAGCCA
GTAGTGTGACCACCTGTATTTCTATTTTAATTCGCGCGGCTATTGTCAAA
ATATCTTTCAAACCAGACTCTTCCACTCAATATAAATAATAACTTTTCAT
CAATGACCAAATGATAATCAATAGGTGGACTGTATAATGAGGAATCTAAT
AATCGATAGACAGTCATAATGAGGATCTTAGGGGTCTTGGCAAAAACCTT
TCAAATTTCTTGTTGGTGTTAGGCTGATAAGGGGAGCAGTCGGGTGTTTA
AGATAAAAACTGCAATTATTGCTCTTTACGGAAATTATTGCCGAAAACGG
CAATTTTTTCAACGATGAAATGCTGAATCAGCAGAANNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTCTTTCTGGCTGTGTTTC
GGCATCGATGCAGGATCTTTTAACATATTATTTTAGAACTTTTCATGTTA
TTGAGCAACGAAAAATCGAAAAAATCACTTTTATAAACCCGAAAAACCTT
TTTCTCGATGCAATTTTACAATTTTCAAACACCTCTGACATCTTTGCCCT
TAAAAGGACAACACATTTTGCTGATTCAGCATTTNNNNNNNNNNNNNNNN
TTTGCTGATTCAGCATTTCATCGTTTAAAAAATTGCCGTTTTCGGCAATA
ATTTCCGAAAAGAGCAATAATTGCAGTTTTTATCTTAAACACCCGACTGG
GGAGAGGGGATTCGACTACATAACAATAAAAAGTAAGTTTTGAAAGGAAA
ATCGTAATTTTACATGTTCATTTCAACTGATTTTCAATCATTTCTCACTA
GGATTCCTTGAAAAGAGATGCTGTGGGCATCTGGAAATGTAAAGGATGCA
GAAAAACTATTGCTGGTGGAGCATGGGCACCAAAGTATGTATTTATTTTA
TTCATTTTTCAACCTAAAACATCAAAGAAATATTTTGAACATAATACACA
TGTTCCTATTTTGGTAACTTTGAGAAAATTGCAATTAAAGTTTTCCCTTG
ATTCCGAAACCATTTTTAATGGCTTTGAAGTTAATGTTTTCTGAAAGCTG
TATATTTGTTGTTTTTTTGGACCTACCCCGGTGGGCTGTAGGTCCTATAA
ATTAACCTCTGTTCGTTCGTTCATTCGTCCGTTCGTCCGTTCGTTACCAG
CTTTTCTCGGGATTGGCTCATTAGTTTTTCCTAATTTTTGGCACAAAGAT
GCAAAATGGTAATGCCCAAAATGTAACGGAGCCCGATTTTCGAAAAAAAT
TCATTTCCAGCCGAAAATGCCGGAAATATGCCGAAAACCGGTTTTTTGGC
ATTTTCTCGAGATTTCATCATTAGTTTTTTCTAATTTTTTGCACAAAGAT
GCGTATTAGCAATGCCTAAAACATGGATTAGTCATATTTTTGAGAAAAAT
TCTATTCCGGCTGAAAATGCCGGAAATATCCCGGAAATCGCCGTTTTTGC
AGATTTTCATTGGACTTTTTCCTTATATTTCGTTGTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTCGCTAAACGATATATTTTCTGACTGATTTTTTTCTCCTCGCATTGC
TATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTT
CAATAAAAAGGCATTCTTTTGGAAAGTAGATATGTTTGTACATAACAGGT
GCAACTTAGTAAGAGTGGACTTAAGCCTTTTTTTAATTGAACATGAATTT
TGAAAAATGTTTGAGGGTTAATTTCTCCCTTTTAAAGCTAAAAACCTGCA
CACGACACTCTGAAATAAAGTCACTTCATAGTGCGGAAAGGGGTCTGATC
CCCCCCTTGTTAAATGATCCCCCTTCTTGGCATCCCCCAACCTTTAAAAA
TGGTTATCCCCCATGGGTTTTGGGCTAAATTTTCGAAAATATATACTGTA
TAGTGTGATCCGATAATCCCTTCTTGCTGCTACCCATCCCCTTATAATTA
AAAAAAAATGGCAAACTTCTTTCTTGCTTCTTGTTGACTCAGACTACCCA
AACAGAAAAACATCCTTTCATGCAGACCAGATTTCATAACAGTGCTGGAA
AATAATCTACAATATATGTAAGCCCCCCCCCTTCCTTGCTATCCCCCCTT
TTTTCATGAAAATTTCTGATCCTCCTCCTTCTTCGTTTTTTCGGAAGGTG
TCACCCCCTTAACTATGTACCTTAACTATGTAAACTCAAATAAACCAAAA
ATCAATATCACCACTCTCTATCGGTATTATAATGAAATTAGCAAATATAA
AAAGGATTTCCAGNGCGAACTATGCACTTACACCTAGATTCAAGATAAAG
AGAAAGGACAATATCAGTAAAATAAAGAAAAACTTATTTAAATATTTTGG
TGGACTTCTTCCCTTTTATAATAAAAAGATAGACTTGGGCCTTTCTATTA
TATATAGCAGAGCTTCACTGTGAAGTTTTGGGCCTAACTTTAAGAACTAC
TTGTTATGTACATTAAAAAAGAGACAATTGGCCAGAGATTGACAAAAACT
AAAGATTTCAAAATTCATAAAAACGGACCTAAGTCCCTTTTGAACTAGGG
GGTAGCCGGACTTGGCCTCTTTGGAATTAAGGTAGTGAGTCATGTTTTAT
AAGAACCACTGTTATTATTTGTTAATGACTTTCAGGCTAATTGATATCAA
TATGATTAACTTAAACTTGCAGATGGATGAATCGTTTGCCTTTTTTGCAG
TGTATGCTAAGCTTTGAAGGCAGAAAGTTTTGTGGAGGAAAAGCCGTGAA
ATTTCTTAAGTTAACAAAACTTTTGGAAAAATTTCCATTTTTTGAAAATC
TTTTTTTAATGGAAATAACTTTCGCAAATGGCTCAAAATGTTTTTCTACA
ATCCCTAAGGAAGAAATATTGATAGCCGTTTGTCATAAGCCTTTTTATCT
TCTTTTTTTTTTTTGCTTTTAATTAACTGAGAGGAAAAAACCATTTTTTC
CGCTTACTTTCTTACATCGACCAGCTAGCGTTAACTTTGGCAAAAAAGGC
GAAACTCTCTGCCCTAAAGTATCTTATCGGCCCTTTTTACACCGGCCTTT
GGCGTTATTTTTGGGCACGTGGCGTAATAAGGGCCGGTGTAAAAAGGGGC
CAAGATTTTGAAATTTTTATCTAAAAGTGGCGTTAATTTTCGATCATTGT
TTCTCAATTTAAAGGATTTTAGGTATAATTCGAAGACAAAAATTATCCAT
TCTTTTACTTCATATCTAGGGCCTTACGAAAATCAGTGATTTTGAATGGA
ATTTTCAACAATTTACTACTGAAACATGACATTTTAATGAAAATTTTAAT
GATTATTTACAAATTTGAAGCATAAGTAGCCATTTTTACAAATTTTGGCG
TTATTTTAACGGCCCTTATTGGCGTAAGCCCAAAATTAGGCTGTGGCGTA
ATAAGAGCCGGCGTAAAAAGGGCCTATAAGGTACTTAATATTCGATTTTT
TTCTCAAAGCTAATCAACACCAATTTTTCACATCGTTCTGACCCAGTAAA
ATATCAAATCTTTTCTTCTTGTTTTATAGCACATCCGCAGCTGTTACAGT
CAGAAGTGCTATCCGTCGTCTACGTGAATTACAAGAAATATAAATTTCGA
TCATTTACAATAACATTTGTGTCATTTATATCGACTTCTCTACTCCTGAT
ACTATCACGTAGATACTGTTGAGCTTAACCCTATTCATCATACTAGACTT
TTTGTAACCCACCCCTTAACTTTTGAACTAGTTGGTCTTTTTGGATGAAA
TTTGTGAGGTAGATTCGCTGGAGTTAGGTATTCGGTAGTCGGGATTCGAA
AAAGCTCAATAAAAACTTAACGAAAAAAGATATTAACTTGAAATAAAAAA
CGGATGCAAGCACACATACTAAGGAATAAATCCCAATAAAAAAAATTCAG
AATGTGAGCTCAGTTGTCACGTGACTATGGGAAATTCCCCTATTCGGGAT
TCAAATCATGTCAGGGACCTTTCTTCAAAAACTCGCCAGTCATCAAGGAA
TAGTTGGATTGACTTCAAATAAAAAACGGATGCAAGTTCACATGTCAAGG
AAAATATTCCAAACAAAAAAATTCAGAATATGAGCTTAGTTGTCACGTGA
CTATGGGAAATTCCCCTATTTGGGAGTTATTTCAATTTAGAGACCATTTT
TAAAAAGCTTACCAGTCATAAGGAAATGGTTGGATTGACTTCAAATAACA
AACGGATGCAAGTTCACATGTCAAGAAAAACATTCCAAAAAAGAAAATTC
AGAATATGAGCTTAGTTGTCACGTGACTATGGGAAATTCCCCTTTTCAAG
AGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067022-exon-scaffold_462-1575043694:915636..916048 | TCONS_00067022-exon-scaffold_462-1575043694:915636..916048 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1575043694:915304..915432 | TCONS_00067022-exon-scaffold_462-1575043694:915304..915432 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1575043694:912015..912097 | TCONS_00067022-exon-scaffold_462-1575043694:912015..912097 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1575043694:907496..908269 | TCONS_00067022-exon-scaffold_462-1575043694:907496..908269 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1510915933:915636..916048 | TCONS_00067022-exon-scaffold_462-1510915933:915636..916048 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1510915933:915304..915432 | TCONS_00067022-exon-scaffold_462-1510915933:915304..915432 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1510915933:912015..912097 | TCONS_00067022-exon-scaffold_462-1510915933:912015..912097 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1510915933:907496..908269 | TCONS_00067022-exon-scaffold_462-1510915933:907496..908269 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1491911889:915636..916048 | TCONS_00067022-exon-scaffold_462-1491911889:915636..916048 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1491911889:915304..915432 | TCONS_00067022-exon-scaffold_462-1491911889:915304..915432 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1491911889:912015..912097 | TCONS_00067022-exon-scaffold_462-1491911889:912015..912097 | Clytia hemisphaerica | exon |
TCONS_00067022-exon-scaffold_462-1491911889:907496..908269 | TCONS_00067022-exon-scaffold_462-1491911889:907496..908269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:907496..916048 - |
Blast
BLAST of TCONS_00067022 vs. Swiss-Prot (Human)
Match: RL37A (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 2.810e-42 Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 3
Query: 411 MAKRTKKVGITGKYGTRYGASLRKMAKKIEVSQHAKYTCNFCGKDSLKRDAVGIWKCKGCRKTIAGGAWAPNTSAAVTVRSAIRRLRELQE 683
MAKRTKKVGI GKYGTRYGASLRKM KKIE+SQHAKYTC+FCGK +KR AVGIW C C KT+AGGAW NT++AVTV+SAIRRL+EL++
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKD 91
The following BLAST results are available for this feature:
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