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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064738 ID=TCONS_00064738|Name=TCONS_00064738|organism=Clytia hemisphaerica|type=transcript|length=2636bpRun BLAST on NCBI transcript from alignment at scaffold_423:215132..225163+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064738 ID=TCONS_00064738|Name=TCONS_00064738|organism=Clytia hemisphaerica|type=transcript|length=10032bp|location=Sequence derived from alignment at scaffold_423:215132..225163+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00064738 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2) HSP 1 Score: 393.275 bits (1009), Expect = 8.580e-125 Identity = 195/462 (42.21%), Postives = 290/462 (62.77%), Query Frame = 2
Query: 878 FXYASMKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRGAILEGASEGIKYYLMPSFDKLKDAKVWVAAATQIFYSLGIGFGSLIAFGSYNKVNNNIVRDAIALSLTNCMTSVFAGFVVFSVLGHMAHKSKLSIQKVATQGPGLIFVVYPEGLAQMPVSTLWGVLFFFMILMIGLDTQFAMLEAVIVGLSDEY-KVLRQHKTTFIFVICLLALLFGISMVTQGGMYIFNIFNWQSG-GVSLLILAFIEVCAISYGYGADRFEKDLELILGRKPSRWWKICWKYLSPFVILATLISSLVQWKGISYNGISYPVYGEVIGWFLALTSVIWIPLVALYKMKFSASGSICNRLRHLLTPNMAELR 2257
+ Y S +PWK C N WNT C N S+ N TS +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+ +GKVVYF+AT+PYI++ IL RG L GA EGI +Y+ P+F KL D++VW+ AATQIF+S G+G GSLIA GSYN +NN+ RD+I + N TS+FAGFV+FS++G MAH +K SI VA GPGL F+ YPE + Q+P+S LW +LFF M+LM+G+D+QF +E I L DEY ++LR + FI +C+++ L G+S +TQGG+Y+F +F++ S G+SLL L F E +IS+ YG +RF +++ ++G +P WWK+CW + +P ++ I S VQ ++ +P +G+ +GW +AL+S++ IP Y M + GS+ R++ ++ P+ +R
Sbjct: 150 YLYNSFTTTLPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAY-MFLTLKGSLKQRIQVMVQPSEDIVR 579 HSP 2 Score: 224.942 bits (572), Expect = 5.280e-63 Identity = 113/253 (44.66%), Postives = 157/253 (62.06%), Query Frame = 1
Query: 115 ASEKTERETWGRKLEFILTCVGYCVGLGNVWRFPYLVFSNGGGAFIVPYFIMLFVCGMPLFLMELALGQYFRLGPVTTWNLACPLGKGIGYAMIAVSFLCTIYYNVIIAWVLYFLYASMKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRG 873
A++ +R+TW + +F+++CVGY +GLGNVWRFPYL NGGGAF++PYF+ L G+PLFL+E +LGQY +G + W LA P+ KG+G A +SF IYY VII+W +Y+LY S +PWK C N WNT C N S+ N TS +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+ +GKVVYF+AT+PYI++ IL RG
Sbjct: 38 AADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLA-PMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRG 258 The following BLAST results are available for this feature:
BLAST of TCONS_00064738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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