TCONS_00064738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064738
Unique NameTCONS_00064738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064738 ID=TCONS_00064738|Name=TCONS_00064738|organism=Clytia hemisphaerica|type=transcript|length=2636bp
AACTGGTTAATAAGGATGAATATTTAACATGACATCATGTCGTCTACTGT
GGAGAAAATTCCTCTCACCAATGGTGCTAACGAACGTAACCATAGCAACA
GTAATAACAATACAGCTAGTGAGAAGACAGAAAGGGAGACGTGGGGACGA
AAGTTGgaatttattttgacatgtgtgGGCTATTGTGTCGGTCTTGGTAA
TGTTTGGAGGTTTCCATACTTGGTGTTCAGTAATGGAGGAGGAGCTTTCA
TTGTCCCCTACTTCATCATGTTGTTCGTCTGTGGAATGCCATTGTTCTTA
ATGGAGCTGGCTTTGGGTCAGTACTTTCGTCTTGGACCTGTCACGACCTG
GAATCTTGCATGTCCTCTTGGAAAAGGGATAGGGTACGCAATGATCGCCG
TCTCCTTCTTATGTACCATCTACTACAACGTCATTATAGCTTGGGTGCTC
TACTTTCTGTACGCATCCATGAAACCACAAGTTCCTTGGAAAAGTTGCTT
CAATTCGTGGAATACACCTAATTGTAGAGAAGATAACCATAAACCGAagc
TTGAGTGGTCATGCCCTTCCAGCAATGGTACTTGGTACAATTACACAGTG
GCCACACTTCCCAAGAACTCGTCATTGTGCAACAAATTCCTGGTCCACGA
GCCAACCTCGCCCAGTATTGAATTCTGGGAACGTCGTGTTCTGCAAATTA
CAAATGGACTGGATGAAAGCGGTGATGTTCAGTATGAATTGTTGATTTGT
TTGGTGGTTGCTTGGATACTTGTTTTCGTGTGTTTGTTCAAAGGAATCAA
AACATCCGGCAAGGTGGTATATTTTACAGCAACATTCCCTTACATAGTAA
TGTTTATTCTCCTTATTCGTGGCGCCATTTTNGTACGCATCCATGAAACC
ACAAGTTCCTTGGAAAAGTTGCTTCAATTCGTGGAATACACCTAATTGTA
GAGAAGATAACCATAAACCGAagcTTGAGTGGTCATGCCCTTCCAGCAAT
GGTACTTGGTACAATTACACAGTGGCCACACTTCCCAAGAACTCGTCATT
GTGCAACAAATTCCTGGTCCACGAGCCAACCTCGCCCAGTATTGAATTCT
GGGAACGTCGTGTTCTGCAAATTACAAATGGACTGGATGAAAGCGGTGAT
GTTCAGTATGAATTGTTGATTTGTTTGGTGGTTGCTTGGATACTTGTTTT
CGTGTGTTTGTTCAAAGGAATCAAAACATCCGGCAAGGTGGTATATTTTA
CAGCAACATTCCCTTACATAGTAATGTTTATTCTCCTTATTCGTGGCGCC
ATTTTGGAAGGAGCATCCGAGGGTATCAAATACTACCTGATGCCTTCATT
TGATAAACTGAAAGATGCCAAAGTGTGGGTGGCTGCTGCAACTCAAATCT
TCTACTCCCTTGGGATTGGTTTTGGTTCGTTGATCGCTTTTGGAAGTTAC
AACAAAGTCAATAATAATATTGTGAGAGATGCGATCGCTCTTTCATTGAC
GAATTGTATGACGTCAGTGTTCGCTGGTTTTGTTGTATTCAGTGTTCTTG
GTCACATGGCGCATAAAAGCAAGCTCTCCATACAAAAAGTCGCAACCCAA
GgACCTGGCTTGATATTCGTGGTTTATCCAGAAGGCCTAGCCCAGATGCC
AGTCTCCACTCTGTGGGGCGTCTTATTTTTCTTCATGATCCTGATGATCG
GGTTAGATACGCAGTTCGCCATGCTAGAGGCTGTCATTGTTGGCCTGTCT
GATGAATACAAAGTACTGCGTCAGCATAAAACTACTTTCATTTTCGTCAT
TTGTTTATTAGCTTTGTTATTTGGCATCTCCATGGTTACTCAGggtggta
tgtacatcttcaacattttcaactggCAATCAGGGGGCGTTTCCCTTCTC
ATTCTGGCTTTCATAGAAGTTTGTGCTATATCTTACGGATACGGAGCCGA
TAGGTTTGAAAAAGACTTGGAGTTAATCCTGGGAAGAAAACCGTCCCGTT
GGTGGAAGATTTGTTGGAAATATCTTTCGCCTTTTGTGATCTTGGCAACG
TTAATTTCAAGCTTGGTGCAATGGAAGGGAATCAGTTACAATGGGATTAG
TTATCCAGTGTACGGTGAAGTTATCGGATGGTTCCTCGCCCTCACGTCAG
TCATTTGGATTCCGCTTGTCGCTctctataaaatgaaattctctgCTTCT
GGTTCAATATGTAATCGTTTACGTCATCTTTTAACACCCAATATGGCGGA
ATTGCGTCAGGTTGCCCTGGACAATGGTTTGAATACAAGTTTTGATGCAA
ATGCTTGAAGTCTTTTGAATGCTAGAGACGTAGTGCGATTCGGAAATACC
ACCTAAAACTAACTACTATAAAAGGCAATGTTTTTCAAGCCTGTCGTCGA
TAACTAGCTACTATGTAAGACAATACTCAAGCAAAAACCAAGCTAAATAC
CGTTTATGAGAGACTTTTCTGGTCACGTAGACCAAAATGAAGACACGTAT
CGATCACGTCATCGAAAGTTAAAATATTCCTACGCATATTATAAGGAcca
gttttttttttggacaatgccgtgttaataaaaattttgtttgtcATTAT
CCTTTGCGTAGTTTACTAATTCCTCGAGATTCTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_423:215132..225163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064738 ID=TCONS_00064738|Name=TCONS_00064738|organism=Clytia hemisphaerica|type=transcript|length=10032bp|location=Sequence derived from alignment at scaffold_423:215132..225163+ (Clytia hemisphaerica)
AACTGGTTAATAAGGATGAATATTTAACATGGTAAGGTATTGGAGCATGA GTATTGATTTGTGGTATATTTATTAATCGCTCATGGGAAATCTGTAACAG TTAGTCTGTCTTTTGTGTAGGGGAATATAATAGCTGTAGTCTTAAGTATG AACTCTGGTATGTTTACAGGTAAAAACTGGCTAAGAACTCAACTCGGCCT GTCTTCCACTTTTGCTTTGAACATCATACCTTATTATGAAAATTTGACCA CTTCTTGGAATTTGATGAGTCAGCAATAAGCAATCAACTGATATCTTTTT TTCCAGACATCATGTCGTCTACTGTGGAGAAAATTCCTCTCACCAATGGT GCTAACGAACGTAACCATAGCAACAGTAATAACAATACAGCTAGTGAGAA GACAGAAAGGGAGACGTGGGGACGAAAGTTGgaatttattttgacatgtg tgGGCTATTGTGTCGGTCTTGGTAATGTTTGGAGGTaatttttcgaagtt tttttccttcttcaCTAATAAAATTGAAAGGTTTTGATCACATAGAGGAG ATTtggctttttcaaaaatttcttgtcGCTATACctggtgcgccacaaaa aagtttctcttctttgaaacaaattttttcgaaatctaaaaattttaaaa gaaccatttctatttcattggaaagaaagaaagatagacttaaattttga tggattatttattaaaatcgattcattaaatcaaaagttatgttcaattg aatagaaaagttactttcgaaaagtgctgaaaaacgttaaaaattaacct atcaaatcaaacagaagcatgattacatgatacatcagtattttcgtttc agtcattaaagatgataattagctgtctaaatgaccttagTTGTATAAaa gaaggttgaatttcaatgaaatgaagaaaatacGTCGNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NTATATCACAGGTGTTTGCCATAAGCAAAAGTTGGTAATGCAAAGTCTCA CAAAATCGCATTTAgcaaacgcaaaaaaaaaattccataatggcggcatc TTGCGAGAGCAATCAGAataccaaaataaacaaatttcaaaggcTCATTG TTAGTGTTTGAGTGAAGctatcatcaaaaaataaaaataaaacaaacctt taacctttcaataatccaaataaacaaaatatgtCAAATGAATTGATGTT TAAGTTCGAAAACAAGCACCATTTCCACCATacacttttagagcaaaaag caGTATTTCGCTGAAATCTGCTGCTCTTCCCAGGCAAATAATTTCTCAGA ATGTCAGAGAGTCTGGTGCTGAATATATAGTTTAGTGGGTCAAGCTTGTT TTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCTGAGACGG GGGTCATAAACGATCTTTGTCTATTTTGAAGTCGTACAATCTTTTACTTC TCAAAACCATTTAGATTCAGGTTTTATATATAATAACAAAGATctttaac caaaatttgtttCATTAAAGTTATTTTCTTTCAGCGAAATAAGCCTTTAG TAAATATTTAAACCCCCGGTTTTATTTAGATATTTACAATGTGATTTTAT AGCGGGAGTTGGAAACCGGCTAGATTGTgtgatctgattggctaaagGAG CAAACGCGGGACTCGGCCTAGGACTTTTTACCCGCGTTTTAAACGCGTTT ACGGCAATGTTTATTCtttacactttcgttttcaaaatctgttGAACATG GATTTTGGCTTGTGACGATAACCTCGCGTAACATCTGtgtgatatgcacc actggagagtctccCGTGAACTTTTCCACCCAATATGTCACTTaaagaat agaaaaagtgaggtattgggtggaaatttttgaaaattctcggACGCCTC CAGAGGTGCATGAATTGGCTATAGCTCGTTTCTAGACTAGTGTTTCTTTC ATAGAATAAAGTATTGGGATTTGTAGAAAATAACAGGTACCTTTTCACTA TTTTACTCTGCAGGTTTCCATACTTGGTGTTCAGTAATGGAGGAGGAGCT TTCATTGTCCCCTACTTCATCATGTTGTTCGTCTGTGGAATGCCATTGTT CTTAATGGAGCTGGCTTTGGGTCAGTACTTTCGTCTTGGACCTGTCACGA CCTGGAATCTTGCATGTCCTCTTGGAAAAGGTATGAGATATTATTTTTAC AGATATGCTTTTTTCAAACGTGCCTAAATCGATGACTTGGTTTCTGACAG CTCTAACAAACTGTTGGAAACCTAGACTTCTTGAAAGTTACGTTTGAGTG AAGTTTTACCTTAATGAATCGTTAACGTCTTGATAATGCGGATACATCTT AAGAGCCCAGGAAAAGCAAGTGgtgttaaaaaatgtttgttaTAATTCAA CATTCGCTTTCGTTTTATAACTTCAGTACCAAGCACTAGCttgaaatgaa tgaatgatATATACCAACCTCCACCCACCTTGAACTCTgttgtactaact tttttgagatttgaaattagacaccaccacatAGTTATGGGTCAGTACCC TGCGGCTGTATCCCCTTCCTCATTATAAACATCAATACTTTCTGCTTTCA GGGATAGGGTACGCAATGATCGCCGTCTCCTTCTTATGTACCATCTACTA CAACGTCATTATAGCTTGGGTGCTCTACTTTCTGTACGCATCCATGAAAC CACAAGTTCCTTGGAAAAGTTGCTTCAATTCGTGGAATACACCTAATTGT AGAGAAGATAACCATAAACCGAGTTAGTGTTTGCCAGAAACTGTTAGAGT TAAGATACACAAATCAACTACATATCACATTTCTCACGATAGCTCCTCAT TTTCAGCTTAACAGCTTGATTTTGTTCACTAAAGTTCCTTGGTTTACTAT AAAATTGTTAtcaattttagatattttaacaaTGTTTTCCTTTATCCTGG GACTTACGCGTTATATATATTAGTTTTCTTGACTGATCTTGACCTGTCCA TCCTGAATTCCCACACTTcttaatttacttttattttcaaagagcTTGAG TGGTCATGCCCTTCCAGCAATGGTACTTGGTACAATTACACAGTGGCCAC ACTTCCCAAGAACTCGTCATTGTGCAACAAATTCCTGGTCCACGAGCCAA CCTCGCCCAGTATTGAATTCTGGGAACGTCGTGTTCTGCAAATTACAAAT GGACTGGATGAAAGCGGTGATGTTCAGTATGAATTGTTGATTTGTTTGGT GGTTGCTTGGATACTTGTTTTCGTGTGTTTGTTCAAAGGAATCAAAACAT CCGGCAAGGTATTTTAGCCTATTTTATCCACTTTGTGCAAAATCGCGTCG TTAATACGTCGAAATATCCTAAAGCCACGTATACTTTTTGcaatagtttt attttattctttagGTTTCAAAACTTGATAAAGCGGGGGGGGTTAGAATA AAAATTTCCTGGGTGGgtgtaaaatttttgaaaaggagactaatacagca gaataattataaagaaatatatttCATCAAATTGTTTGGTTTTTTATACC TATTTATCGCTATTTCCTCTGCAATGAAATACACACCTATGAGAATTAAA TCGCTGATTCACTGTGATAATCATTGAGTCGGGATTTGAGACAGAAATAC TGGGTCGTCCCAGCTGTGCTCCTCCgtcaaaaagaaagtaaaaatacTTG GAAAATATAATAATATGTGCGCTCTTTCTCCTTTTCAGGTGGTATATTTT ACAGCAACATTCCCTTACATAGTAATGTTTATTCTCCTTATTCGTGGCGC CATTTTNGTACGCATCCATGAAACCACAAGTTCCTTGGAAAAGTTGCTTC AATTCGTGGAATACACCTAATTGTAGAGAAGATAACCATAAACCGAGTTA GTGTTTGCCAGAAACTGTTAGAGTTAAGATACACAAATCAACTACATATC ACATTTCTCACGATAGCTCCTCATTTTCAGCTTAACAGCTTGATTTTGTT CACTAAAGTTCCTTGGTTTACTATAAAATTGTTAtcaattttagatattt taacaaTGTTTTCCTTTATCCTGGGACTTACGCGTTATATATATTAGTTT TCTTGACTGATCTTGACCTGTCCATCCTGAATTCCCACACTTcttaattt acttttattttcaaagagcTTGAGTGGTCATGCCCTTCCAGCAATGGTAC TTGGTACAATTACACAGTGGCCACACTTCCCAAGAACTCGTCATTGTGCA ACAAATTCCTGGTCCACGAGCCAACCTCGCCCAGTATTGAATTCTGGGAA CGTCGTGTTCTGCAAATTACAAATGGACTGGATGAAAGCGGTGATGTTCA GTATGAATTGTTGATTTGTTTGGTGGTTGCTTGGATACTTGTTTTCGTGT GTTTGTTCAAAGGAATCAAAACATCCGGCAAGGTATTTTAGCCTATTTTA TCCACTTTGTGCAAAATCGCGTCGTTAATACGTCGAAATATCCTAAAGCC ACGTATACTTTTTGcaatagttttattttattctttagGTTTCAAAACTT GATAAAGCGGGGGGGGTTAGAATAAAAATTTCCTGGGTGGgtgtaaaatt tttgaaaaggagactaatacagcagaataattataaagaaatatatttCA TCAAATTGTTTGGTTTTTTATACCTATTTATCGCTATTTCCTCTGCAATG AAATACACACCTATGAGAATTAAATCGCTGATTCACTGTGATAATCATTG AGTCGGGATTTGAGACAGAAATACTGGGTCGTCCCAGCTGTGCTCCTCCg tcaaaaagaaagtaaaaatacTTGGAAAATATAATAATATGTGCGCTCTT TCTCCTTTTCAGGTGGTATATTTTACAGCAACATTCCCTTACATAGTAAT GTTTATTCTCCTTATTCGTGGCGCCATTTTGGAAGGAGCATCCGAGGGTA TCAAATACTACCTGATGCCTTCATTTGATAAACTGAAAGATGCCAAAGTG TGGGTGGCTGCTGCAACTCAAATCTTCTACTCCCTTGGGATTGGTTTTGG TTCGTTGATCGCTTTTGGAAGTTACAACAAAGTCAATAATAATATTGTGA GGTAAAAAGTTCATCTCTGCTACTGCTACTGTAATATCCTTTatcccgca tcagtaagattctagtgatttcattggtcaaaagacatcacgtggaggtg ggatataAACCGTATCCTGTCTTCTTCGcgttcgattgagaaaaaaagaa gacattgcatattgacgaatgcgctttcgaatgttttgttttgaaaagac ttgaaatcgaaattgaaatggTCGGGGTTGAGAAAGTCAACAAACAGGAA ATCTTTGAAGTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNGTTGAGAAAGTCAACAAACAGGAAATCTTtgaagtt attttgatttttacttttcttgagtTTATATGGATACAACAAGACTTTTA ATTGCGATGTTATAAAATGTCACTCTCACGGATCCCACAAACTCGgcaag cctcgccaccaatacagtttttactgaccctgtatatcccgtatcccacc tcgagaagaccgtgtaactaatatTATCCCGCATCAGTGAGATTCTAacg atttcattggtcaaaagacatcacgtggaggtgggatatGTACCGTATCT GTCTTCCTCACGTTCgattaagaaaaaaaagaagacattgcatattgacg aatgtgctttcgaatgttttgatcaagattcgaatgttttgttttgaaaa gacttgaaatcgaaattgaaatggTCGGGGTTGAGAAAGTcaacaaacaa aaaatcttcagttattttgatttttacttttcttgagtTTAATGGATACA GCAAGATTTTTAATTGCGATGttataaaatgtaactttcacGGATCTCCC TTTCACTGTTTGATTTACTTTGTAGCTCTTTGTTGATGTAAGTATTTACT TGGATTTTTTCGTGGTTTTGGAAAAGATGCAAGGGACTTCAACGGGATAA ATCCGTTGCACGCGGTCGTCTCGAGaagcctcgccaccaatacggtttta ctgaccctatatatcccgtatcccacctcgagaagaccgtgtaactaata gAATTCTTTACCTTTTCACCCAAGAAATAGTGAAAACTTAACATGTACTT AAAAGACGAACTTAATTAAGCGATTCCTTTATTTTCAACTTGTACATTTT TGAAGTCTGGcgataaattttattttcaatccggCAAATTGTCCCCATCA AGAAAGCAAGAAAGAAGTTTCTAGCTTGTGGCCgaagtcaaagaaaaaaa atgtattagTACAAGTTTTGCCAGAAGCTAAGCTCACTCATACATTGATT ATTACCATTTAAGTAATTCGACCGTGAGGTGCTTGTTCGAGGAAGTACGG TAATTCTAAATATAAAGAACTTGCGTTTACGAGGGAATGACCCAAAGTTT AAATTAACCTTTCTCTTCATTTCATTTCAGAGATGCGATCGCTCTTTCAT TGACGAATTGTATGACGTCAGTGTTCGCTGGTTTTGTTGTATTCAGTGTT CTTGGTCACATGGCGCATAAAAGCAAGCTCTCCATACAAAAAGTCGCAAC CCAAGGTATATTACACCTCAACCCCTTATTCGTGCAGCTCAAGAATCTAT CTAATCTACCTGAACATACTTGGACAAGTAATGGTcgaatgatatttttt taaagatacatCCGATTCAAGTATATACCGAGACTCGTAGCTTTATAGAG TGTAATTTCCAAGACCATATACTTGGACAAGTATTAGTCGaatgatattt tttaaaagatacatCTGATTTAAGTATATACCGAGACTCGTAGCTTTATA GAGTGTAATTTCCAAGATCTGCAAAAGGTTAATCCAGAgactttaaattc aaaatttaagaattttcaaagcaaCTTTAGATTTAAAATCAGACAATAAC ACAACatattgattttttgtttcaggACCTGGCTTGATATTCGTGGTTTA TCCAGAAGGCCTAGCCCAGATGCCAGTCTCCACTCTGTGGGGCGTCTTAT TTTTCTTCATGATCCTGATGATCGGGTTAGATACGCAGTTCGCCATGCTA GAGGCTGTCATTGTTGGCCTGTCTGATGAATACAAAGTACTGCGTCAGCA TAAAACTACTTTCATTTTCGTCATTTGTTTATTAGCTTTGTTATTTGGCA TCTCCATGGTTACTCAGGTACGTTTCATTATACATCCAATTTACTCTCTT TTATTCAAATCTTCAAAGACCAggaattttccttaaaaaggtAAAGAGAC ATAAGTTACGTACACTTCATCACTTCATTATGTCAGCTAAAATTTACTGA CCTAACCTAAACAGGGGTGTGAACCTAAACAGGGGTGTGATTAGCTGTAG TTTTTTAAAACCGGGTGAAAAAGAGTCTTCAATGAATTAGTTTATCAAGT GATGGGAGATTAACATCTCAGCTAACTTTGCATTTTTCAGGGCTAAAGAA TACTGTTCTAGACACTGCtgttcaagttttattttttaaagtgtAGACAA ATTAGTATATCAAGCGATGTTAAAATTAAAACTCTGCTCCAAATCAAGCA TTCTAaattaaatttatatttttcagggtggtatgtacatcttcaacatt ttcaactggCAATCAGGGGGCGTTTCCCTTCTCATTCTGGCTTTCATAGA AGTTTGTGCTATATCTTACGGATACGGAGCCGATAGGTTTGAAAAAGACT TGGAGTTAATCCTGGGAAGAAAACCGTCCCGTTGGTGGAAGATTTGTTGG AAATATCTTTCGCCTTTTGTGATCTTGGCAACGTTAATTTCAAGCTTGGT GCAATGGAAGGGAATCAGTTACAATGGGATTAGGTGAGATTTCTCTAAGC TTAAATTTACTCTTtatccatttcaatattttctaacTTTGCACGGTAGC TGTTGAAGGATTATTTCTTACTGGGACACTTCTACTTGGACCTTTATTCA ACGAAAATCATTTACGATCAATTTTGCTGGTTTTTGTAAAACCTTGTACC TTTAGCCTTTCTATTGAACGATATGAATTTTATGATAGCCCAATGTATTT AGTGGTCTTACAGTAATGTAGCTTTTTGGATTTACATATAGAATATACAG TAgtgtttctttaactcgaacctctgttACTCGAAtgcctccttaactcg aacaagttttctcgtccttcaattaacaatgccttatataTCTTATTCAA TAAATGGAAATTTgcttaactcaaacaagtttatattccccgtgcgtgtt caagTTAAGGAAACTCCACTGTACATTaaagtctctttaactcaaagttc tataactcgaatttctccataacttgaactaattaacaatgccttataaa ccctactccataactcgaaatttcctaaactcgaacaaatttgtgttccc cgtgcgggtttgagttatggagattccATTTTACCATCTTTTTCAGTTAT CCAGTGTACGGTGAAGTTATCGGATGGTTCCTCGCCCTCACGTCAGTCAT TTGGATTCCGCTTGTCGCTctctataaaatgaaattctctgCTTCTGGTT CAATATGTAATCGTTTACGTCATCTTTTAACACCCAATATGGCGGAATTG CGTCAGGTTGCCCTGGACAATGGTTTGAATACAAGTTTTGATGCAAATGC TTGAAGTCTTTTGAATGCTAGAGACGTAGTGCGATTCGGAAATACCACCT AAAACTAACTACTATAAAAGGCAATGTTTTTCAAGCCTGTCGTCGATAAC TAGCTACTATGTAAGACAATACTCAAGCAAAAACCAAGCTAAATACCGTT TATGAGAGACTTTTCTGGTCACGTAGACCAAAATGAAGACACGTATCGAT CACGTCATCGAAAGTTAAAATATTCCTACGCATATTATAAGGAccagttt tttttttggacaatgccgtgttaataaaaattttgtttgtcATTATCCTT TGCGTAGTTTACTAATTCCTCGAGATTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040602XLOC_040602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064738-exon-scaffold_423-1491911889:215132..215162TCONS_00064738-exon-scaffold_423-1491911889:215132..215162Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:215132..215162TCONS_00064738-exon-scaffold_423-1510915933:215132..215162Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:215132..215162TCONS_00064738-exon-scaffold_423-1575043694:215132..215162Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:215438..215615TCONS_00064738-exon-scaffold_423-1491911889:215438..215615Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:215438..215615TCONS_00064738-exon-scaffold_423-1510915933:215438..215615Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:215438..215615TCONS_00064738-exon-scaffold_423-1575043694:215438..215615Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:218095..218261TCONS_00064738-exon-scaffold_423-1491911889:218095..218261Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:218095..218261TCONS_00064738-exon-scaffold_423-1510915933:218095..218261Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:218095..218261TCONS_00064738-exon-scaffold_423-1575043694:218095..218261Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:218683..218853TCONS_00064738-exon-scaffold_423-1491911889:218683..218853Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:218683..218853TCONS_00064738-exon-scaffold_423-1510915933:218683..218853Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:218683..218853TCONS_00064738-exon-scaffold_423-1575043694:218683..218853Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:219124..219389TCONS_00064738-exon-scaffold_423-1491911889:219124..219389Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:219124..219389TCONS_00064738-exon-scaffold_423-1510915933:219124..219389Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:219124..219389TCONS_00064738-exon-scaffold_423-1575043694:219124..219389Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:219820..219977TCONS_00064738-exon-scaffold_423-1491911889:219820..219977Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:219820..219977TCONS_00064738-exon-scaffold_423-1510915933:219820..219977Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:219820..219977TCONS_00064738-exon-scaffold_423-1575043694:219820..219977Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:220248..220513TCONS_00064738-exon-scaffold_423-1491911889:220248..220513Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:220248..220513TCONS_00064738-exon-scaffold_423-1510915933:220248..220513Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:220248..220513TCONS_00064738-exon-scaffold_423-1575043694:220248..220513Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:220944..221182TCONS_00064738-exon-scaffold_423-1491911889:220944..221182Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:220944..221182TCONS_00064738-exon-scaffold_423-1510915933:220944..221182Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:220944..221182TCONS_00064738-exon-scaffold_423-1575043694:220944..221182Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:222612..222736TCONS_00064738-exon-scaffold_423-1491911889:222612..222736Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:222612..222736TCONS_00064738-exon-scaffold_423-1510915933:222612..222736Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:222612..222736TCONS_00064738-exon-scaffold_423-1575043694:222612..222736Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:223107..223348TCONS_00064738-exon-scaffold_423-1491911889:223107..223348Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:223107..223348TCONS_00064738-exon-scaffold_423-1510915933:223107..223348Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:223107..223348TCONS_00064738-exon-scaffold_423-1575043694:223107..223348Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:223758..224014TCONS_00064738-exon-scaffold_423-1491911889:223758..224014Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:223758..224014TCONS_00064738-exon-scaffold_423-1510915933:223758..224014Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:223758..224014TCONS_00064738-exon-scaffold_423-1575043694:223758..224014Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1491911889:224628..225163TCONS_00064738-exon-scaffold_423-1491911889:224628..225163Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1510915933:224628..225163TCONS_00064738-exon-scaffold_423-1510915933:224628..225163Clytia hemisphaericaexon
TCONS_00064738-exon-scaffold_423-1575043694:224628..225163TCONS_00064738-exon-scaffold_423-1575043694:224628..225163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:215132..225163 +
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00064738 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 8.580e-125
Identity = 195/462 (42.21%), Postives = 290/462 (62.77%), Query Frame = 2
Query:  878 FXYASMKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRGAILEGASEGIKYYLMPSFDKLKDAKVWVAAATQIFYSLGIGFGSLIAFGSYNKVNNNIVRDAIALSLTNCMTSVFAGFVVFSVLGHMAHKSKLSIQKVATQGPGLIFVVYPEGLAQMPVSTLWGVLFFFMILMIGLDTQFAMLEAVIVGLSDEY-KVLRQHKTTFIFVICLLALLFGISMVTQGGMYIFNIFNWQSG-GVSLLILAFIEVCAISYGYGADRFEKDLELILGRKPSRWWKICWKYLSPFVILATLISSLVQWKGISYNGISYPVYGEVIGWFLALTSVIWIPLVALYKMKFSASGSICNRLRHLLTPNMAELR 2257
            + Y S    +PWK C N WNT  C                              N S+ N       TS  +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+  +GKVVYF+AT+PYI++ IL  RG  L GA EGI +Y+ P+F KL D++VW+ AATQIF+S G+G GSLIA GSYN  +NN+ RD+I +   N  TS+FAGFV+FS++G MAH +K SI  VA  GPGL F+ YPE + Q+P+S LW +LFF M+LM+G+D+QF  +E  I  L DEY ++LR  +  FI  +C+++ L G+S +TQGG+Y+F +F++ S  G+SLL L F E  +IS+ YG +RF  +++ ++G +P  WWK+CW + +P ++    I S VQ   ++     +P +G+ +GW +AL+S++ IP    Y M  +  GS+  R++ ++ P+   +R
Sbjct:  150 YLYNSFTTTLPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAY-MFLTLKGSLKQRIQVMVQPSEDIVR 579          

HSP 2 Score: 224.942 bits (572), Expect = 5.280e-63
Identity = 113/253 (44.66%), Postives = 157/253 (62.06%), Query Frame = 1
Query:  115 ASEKTERETWGRKLEFILTCVGYCVGLGNVWRFPYLVFSNGGGAFIVPYFIMLFVCGMPLFLMELALGQYFRLGPVTTWNLACPLGKGIGYAMIAVSFLCTIYYNVIIAWVLYFLYASMKPQVPWKSCFNSWNTPNCREDNHKPKLEWSCPSSNGTWYNYTVATLPKNSSLCNKFLVHEPTSPSIEFWERRVLQITNGLDESGDVQYELLICLVVAWILVFVCLFKGIKTSGKVVYFTATFPYIVMFILLIRG 873
            A++  +R+TW  + +F+++CVGY +GLGNVWRFPYL   NGGGAF++PYF+ L   G+PLFL+E +LGQY  +G +  W LA P+ KG+G A   +SF   IYY VII+W +Y+LY S    +PWK C N WNT  C                              N S+ N       TS  +EFWER + Q+T+GLD+ G +++ L I L +AWILV+ C++KG+  +GKVVYF+AT+PYI++ IL  RG
Sbjct:   38 AADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLA-PMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS----------------------------NYSMVN---TTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRG 258          
The following BLAST results are available for this feature:
BLAST of TCONS_00064738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A18.580e-12542.21Sodium- and chloride-dependent GABA transporter 1 ... [more]
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