TCONS_00064498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064498
Unique NameTCONS_00064498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064498 ID=TCONS_00064498|Name=TCONS_00064498|organism=Clytia hemisphaerica|type=transcript|length=1235bp
TATTTTACATAcatcttttgatttttagagtaaaaaaaaattatgtgaaT
AGTcaggaaaaaaatgaatttgaatgaagTTCATGTTGTTCGTCTTCAGT
GGCCGGGAATGGTATACCATACATTAGCTCAACCTCTTATCATCTTTCTG
GAATCATTTTGACATGGTCAATGTAATGATCAATTATAATGGTTATAATA
AGATGACAGACACTTATACCAAAAGTTGACAAAACTGAAAACGACACAGT
AACGAAAACGAAAGAAAGACGAATACTACTGTATAGACGTGACGATTTTT
CACGATGAATTTGACATGGATGCTTACACTACAGTCCGTTATTTTCTCCA
CCATCATCTTACTGGAGACGAGTGGTGAATATTTCTCGTCGAGCGGACAT
ATGCGTTATTTATTTGATATAGAGAAACAACTGGCATCTCGTCTAAGAAC
CACCATTGAGCGGGAGGAGCGCCGAATAGCAGAGctgaagaaattttata
ataAGATTGAACATattgagaagaaagaagatgaaAGGAATTATATCGGA
CATCCGAATAACGCGTTCAAAATCTTGAGAAGACTGCATCGTGATTGGCC
TAAAGTTCAGAAAGTAGCTGAACGGAACCACGAGGAATTTTCAGAGTTCT
ATGCACAATATGGCAATCTACTACCATCCGCCGATGATGTGGACGGTGCC
CGCGCGGCCTTGTTGCGGCTTCAGGAGACGTTCGCATTGTCTGCAAGTCA
AATATTGAATGGAATTGTCCCAGCTTCGAACGGGTTCACCAAACTATCGG
CATCAGACGCGTACGATATTGGCCGCATGGCGTACACTGATAAAAGATAT
GATGTGACGATAGGTTGGATGAAAGAAGCGTTAAAAATAGTTGATACAAG
TAACCATGGAGATGGTTTACCAAGCAAAGTAAATATTCTGGACCATTTGG
CATGGTCAGAGTATAAGATCAATCGAATGAGTGACGCGCTAAACCATACC
AACCAATTATTGAAACTTGACCCTGAGAACGATCGTATCCAACGTAACAA
AGAAGCCTTTGAAAATTACCTCCTCGAGGGCGTGGAGGCGGAGGGCGAGA
AAAATCTTGAAGAAAGACTCGCACCTCATGAGTTTCCTCACTTTTATTAC
ACCCCTGATGAAAACGACTTTGAGCGGTATCACATTGAACGCAAATTGTG
GCAAAAATTATGTCGTGGTGAAACCAAACCTGTGG
Run BLAST on NCBI

protein sequence of TCONS_00064498-protein

>TCONS_00064498-protein ID=TCONS_00064498-protein|Name=TCONS_00064498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MNLTWMLTLQSVIFSTIILLETSGEYFSSSGHMRYLFDIEKQLASRLRTT
IEREERRIAELKKFYNKIEHIEKKEDERNYIGHPNNAFKILRRLHRDWPK
VQKVAERNHEEFSEFYAQYGNLLPSADDVDGARAALLRLQETFALSASQI
LNGIVPASNGFTKLSASDAYDIGRMAYTDKRYDVTIGWMKEALKIVDTSN
HGDGLPSKVNILDHLAWSEYKINRMSDALNHTNQLLKLDPENDRIQRNKE
AFENYLLEGVEAEGEKNLEERLAPHEFPHFYYTPDENDFERYHIERKLWQ
KLCRGETKPV
Run BLAST on NCBI

transcript from alignment at scaffold_418:233720..240450+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064498 ID=TCONS_00064498|Name=TCONS_00064498|organism=Clytia hemisphaerica|type=transcript|length=6731bp|location=Sequence derived from alignment at scaffold_418:233720..240450+ (Clytia hemisphaerica)
TATTTTACATAcatcttttgatttttagagtaaaaaaaaattatgtgaaT
AGTcaggaaaaaaatgaatttgaatgaagTTCATGTTGTTCGTCTTCAGT
GGCCGGGAATGGTATACCATACATTAGCTCAACCTCTTATCATCTTTCTG
GAATCATTTTGACATGGTCAATGTAATGATCAATTATAATGGTTATAATA
AGgtaatttgaattattttgatatttcttgttCCCATCAAAACTCTTACT
GTTATAAAACCCCAAGTATTTTGTAAGCTTTTTTATACACAACAGCTTAT
TTCGTATGTGCATACTGtatattttctgtttttctgatacttcaatattt
tttttcaatccaaACTCGATTTTCTCTGTGCTAAATGGGTAGaatatatt
ttaaggctttaaatCCTGGAAAATTAGCTGAAATGCTTTGCCTATAGTTC
TCTCACCCCATACGATTGTTTACAAACTAGGAACCAAAAGGTGGTCATCT
GATCGCGAGTTTTCATGAATGATTTGATATGATTGACAGGAAATTTGAAT
TGGGCGTTATGACAAATTACTGCTGTGATTTTGTTAACACTTACGagaag
tttcttttttttaaatcgttgCACTTATTGACCCTTTtccatttcaaaat
aaacaataaaatgatgggaaaagttgaaactgtttttatttttattgtaa
gCAACCAATTAGGCGACAGGGaaaggaaaagttcattttgAATACAtgcc
aaaatatattttattcccATACAAAAATACATGGATTTTATTGTAAGCAT
TTTAAATCTGTGTCTTATTTATTGTCGTTCATATTCATTGTAACACCTTC
TCTAATTCTGTTTCAAGGGGAATTTGACATGCAGTAAATCTGGAAGTATT
TCGAATAAGAGGAAATCTCTCTAATCCGATAAATAAAGGTTGATATCGAA
TTATAAGAGTCGAGTAAGAATAATTAGAGCGAAACTCGATTGGCTTAAAT
TTTAGCGAAGATATCGATTTTTTTCTCAGAATCGATctccaaaaaatcga
aaattcgaAGCTCATCTCCCAAAGACCTTTTTACACGCTTGAACCAATaa
gagattttcattttcatcgaaATCAGGAGTTTACCGAATAATAGAATGTA
GAATTCGAGTCGGGGGCTGCATTTGAAATTTCCGAATTAtctaaacgaaa
aaagaagtTGGTTTAAgactaaaaaaactttgaatttatTATGTATTTTT
TAACGTCTTCCTCGTGTGATGATAAGGACAGTATATATTTCAGGATCAAA
CTTTTATACTTCTCTAACAGTCTAGTCCTAggtatttttttggtttttat
ttcgACGATAATGTCGTGAACTTGAGATCATATTACCATCCAACGAGACA
CCGTGAAGCCGCACATAAAACTTAAAGCTGTCATTTATGGAGAATTTAct
ctttataataaaaaaaaactttgtcaaAATATTATATCTCTTTATTCTAA
TATGACATTGTCAATGTTTACCTTTCTGAcgtgatttttatgaaaagaga
tttttgaaggACGTATTGTTAAAGTAGctttgtgtttttgagtctCGCTT
CGCTTGGAAACGTGGAAAAACTTCGTGAACAGGAAGTACTGTAAAATTGT
ATGAAAGTTTATTTTGAGAtgatttggtttgttttgtgtttttgagtctC
GCTTCGCTTGGAAACGTGGAAAGACTTCGTGAACAGGAAGTACTGTAAAA
TtgtatgaaagtttttttttttgagatgcTTTGGTTTGTTTTCGTGTGAT
TTTTGTTGTATTGGTCTCTCTGTGATGTTGGATATTTTTGTATGTTGATG
CTAGAAAGTTTCATAGTTTTGTTGACTTATACTATCCTATATGTGTGATG
TATAAGCTgggaaattttgatattttatgcttgtttataaaagatttctg
atttttactgaaatattgaaaattttgaattgttgGTTTAAACTTTGaca
gaaaaaatttaattcCCAGCCCTCAATTAACTGCAACTGGTATAGTTTTT
GTTCCTCTTGAAACTGATCTTAACAGAACAACTCCTCATTCAATTGGTCC
AACCCTTCAAACCCTCCAAAACTTCTACAGTTTTTTCCTGTTCCAAAGCC
CTTGTCGAACTCTTAAAGTATTTGGTAATCTTCATCGGTGGTTTATCTCT
TTACCTCTTTACATACCTAAATACCATCCTGATTAAATGGTGGGCTCGAA
TCAAAGAAATAATTAGGTTTTGGAGGTTTTATACCCAATTTAATCTGGTT
TGAGCCTCAAACTACATGAAATTTAACAATTTCAGACTGggcattgttct
tattttttgacaatttttgagcCTGATGTTCGTtctataatttgttctta
tgagCTATGCTGATTAAACCATTGAGTACGAAATTTTGATCTccctaatt
tcaaaatattgctatgttATATTAAATATGTTTCTATGGTATAAGCGATG
TGCCTTAAGTAAATATTCAGCGGAAACTAACACTGTTAATATCAAATTGT
TTAAATTTGAAATGCAGTTAAATCAACTCTAATATTTGCTTTCGATGCTT
ACTTTCAAAACATGGACCTTCGTGTTTTTGATTGGGTGCTAAAATGGCCT
TAAGTTATTTAGTTAACAGCTTTAAAGTGCAGAGTTCATCATAGCAACGC
CACGAGAGAATTGAGTTCGGGCTTAACAGGCCCGAATGACTTCTAATTTG
TCTTCTCTTGTGATTTAATCGATGACTTCAGAAATTTGACACCATTCGAT
GTTGGTCTCCTCAGTTAAAGGCCTTACAAAAACTCGAAACTTTCTTTAAG
GAAAAAGTCTTGGTTcgaattgggccattccattttatatccatacaggg
gggtgaacgaacatttccagggggtaatcggagaagaatttccagggggt
atttgCTCATTTTCCCAGTAGGTAAaaggttattctaaaatttccagggg
gtaatagACTCATTTTTGTTCGTCCACCCTtacttttaaggtatgaaaat
aattttacaagacttcttttgcaaattttgccattttccagggggtatca
ccatatttctaaaaatctttgtttgccttaaaaaggttcgtccacacccc
tgtatggaaatttaatggaacaccCCATTACTGTATAATCAACTGTTTGT
TTCACCAATAGTATGCCTTTCCCATTCTCGTTTCGTACATTTAAGAAGGG
ACTGAATGTTTCAATTTCGATCTAGAGATgctcttctttttcaaaatcaa
tttcattttgacattttcctttCTAATTTAATCATCAGAAAGTTTATCCT
TTTTTATTGGTTATATGTAATGAACTCACATAATTAGATGGTAATTACTT
CCTTTTTTATCTGTGGTCGTGCTTTTCTAtgatggatttttttcattctc
CTCTGCGCTTCTTGAATTTAATAAGATCCGAGGAAGCCCACTTTGAGAGC
GGGCGGCGGCCAGAAAGACAATATGGAACCGAATTTTTCTACGGTTTATt
ttagaatatttcaggattttGATCGATCGGTATATCATATCAAATAAACA
GTACTATTTATTAATTGCGACTTTCTGATGGAtgttcctataaaaataat
taggTATTATGTTTGCTCATTACGGATCTATTAATGACTTTCATTTCCAA
TTTCCTTTTTATTGATGAGTTTTGATCTATTTGTATAACAGATGACAGAC
ACTTATACCAAAAGTTGACAAAACTGAAAACGACACAGTAACGAAAACGA
AAGAAAGACGAATACTACTGTATAGACGTGACGATTTTTCACGATGAATT
TGACATGGATGCTTACACTACAGTCCGTTATTTTCTCCACCATCATCTTA
CTGGAGACGAGTGGTGAATATTTCTCGTCGAGCGGACATATGCGTTATTT
ATTTGATATAGAGAAACAACTGGCATCTCGTCTAAGAACCACCATTGAGC
GGGAGGAGCGCCGAATAGCAGAGctgaagaaattttataataAGATTGAA
CATattgagaagaaagaagatgaaAGGAATTATATCGGACATCCGAATAA
CGCGTTCAAAATCTTGAGAAGACTGCATCGTGATTGGCCTAAAGTTCAGA
AAGTAGCTGAACGGAACCACGAGGGTAcagttttacactttttttctaCA
TATTCGCCTTAAAGATTTCCCTGTCTGTTTTTTTTATCGAGATTTTCTAA
TCAGTTTGAATTTCCAGGACTTTTAAAGCCTTATTGCAATACATGCTTag
cgttctacatctgcaatttgagctttactaagctcatttgacgGCAACCA
AACGAGTGAAGACGTAGAGTTAGAGGGTCTATCACCATAGTAGTGTTAAG
GCcagggcaaaccgatccaacatttcatgcaacatgccttttttctgatg
ttggatAAAATGTCGGACCGGTTTgcgtcaattcaaatttttggaaaaaa
tgaaaattcaaaaaaagaagaaaaaaatcgtgttggACGGTGTTGGATAA
AGTTTGATCgtcatcaaacatttcatccaacattggaaaatcatgttgga
tgaaatgttggactggtttgcTCTGGCCTTTAGTGCACATCCAGACAGGG
TGCTAGAAAAATAtagtgatagactctctaccttcacctCATTGCAATGT
TGCAAACGACACTGAACTAACAGAGACATCGACTTTCCCTTTCTCCATCA
TAATCTCTTCATCACTTGAAACAACTGTTAAGGGAGGTCCATAAAGTCAG
CATGAAACCTTCATCTGTGACCTTTACCTTGGTATGAGACTTGTCAAACC
TTCAGTCAAATTAAGTTTCTCAAGATTAGATGGGCTTTCATTTATAAGAA
AGgagtaagattttttttttgctagacTCATGGTTGGGTCTCTACAATTA
CATTATTCTTTCCGATTCAGAGGTTTGCCTATCTATCTCATTTAAGACCT
CTTTCTCGATTGAATAGAGTAGGTTAACTTGGAATCCTGCCTGTGGAGTC
GCTTTTTCTTCCAGAATTTTCAGAGTTCTATGCACAATATGGCAATCTAC
TACCATCCGCCGATGATGTGGACGGTGCCCGCGCGGCCTTGTTGCGGCTT
CAGGAGACGTTCGCATTGTCTGCAAGTCAAATATTGAATGGAATTGTCCC
AGCTTCGAACGGGTTCACCAAACTATGTAagatatcaattttcttttgca
CTTCTTGCAGTTTATACAATTTATGctttttgactggcttcagTGTTCTT
ATTTAGACAAGGCAAGAACCgtggtgcagtggtagagcatacGGCTACGG
TTCGGAAGGTCGTGGGTTCTACTCCCAGCCGAGTCATATCAAAatagtac
ttgatgcctctctgcttNTTCATCGGTCTAGAAATCGGTCTAGGCTGACT
ATATGAAAAATTGTCTGATCAGAAGTAAAACAAAACCTGAAATCAAAGTC
GTTAATATCTTTCTTTAGCGGCATCAGACGCGTACGATATTGGCCGCATG
GCGTACACTGATAAAAGATATGATGTGACGATAGGTTGGATGAAAGAAGC
GTTAAAAATAGTTGATACAAGTAACCATGGAGATGGTTTACCAAGCAAAG
TAAATATTCTGGACCATTTGGCATGGTCAGAGTATAAGGTGGGTATTATT
GATTTTTAGGCGATTTGTTAAAACCCTTTTTAAATCCCTAGACTAAGTTA
TGTTCGCCATCTTTGTTAAGAGTTTTTTAAATTCCTTCACCCTGCATTAC
ATACATGATGTTAGTCAATTTTAAAAATACAGTCCTAATGTTCTAAGTGA
TATATCGATCAATATAAATCGAACACACATAGGCAGGGAACCCTAAACAG
ACGATGCAAATTTTTCTAAGCTTTAGAAATTTCGAGTtagagaggttcga
gttatagagattaaattctgtatttcaaaagtttttagaatctaaAGCTT
GAAAATACTCTTTACAGATCAATCGAATGAGTGACGCGCTAAACCATACC
AACCAATTATTGAAACTTGGTAAGATATTGAATTTACTGTTTTCACTCAA
TCTTCGTTTCATTTACTATACCCCTTACATTCGACTCTACATGGGCGTTG
ATTGGGCGttgatttcatttgaaaaaatctgtCATTCAATAGATTCCTAA
AAATTTGGTCCTTCATTAAGGTTATACATATAGAATGCCTTGACATAACA
TCAGTATCGAACGTTATGACAGGCACGACGGCAGCTTTTTATATCTTGTA
cagcgaatgaggaaatttcagcgattttttagcgattttagcgacgaaga
ggaaaatctcggtttttttttaaatttgttacgCTAGccgccgtacctgc
cgtacccgttgcATCGTGCCTGTATGAGCGTTGGACGGTCATTGAAGCAA
TGCCCAAGCAATGTTATGTACATGTTGTCCTAGTTGTAGCCTGTGGTTTC
CTTCTTCACCTATAGACCCTGAGAACGATCGTATCCAACGTAACAAAGAA
GCCTTTGAAAATTACCTCCTCGAGGGCGTGGAGGCGGAGGGCGAGAAAAA
TCTTGAAGAAAGACTCGCACCTCATGAGTTTCCTCACTTTTATTACACCC
CTGATGAAAACGACTTTGAGCGGTATCACATTGAACGCAAATTGTGGCAA
AAATTATGTCGTGGTGAAACCAAACCTGTGG

Coding sequence (CDS) from alignment at scaffold_418:233720..240450+

>TCONS_00064498 ID=TCONS_00064498|Name=TCONS_00064498|organism=Clytia hemisphaerica|type=CDS|length=4650bp|location=Sequence derived from alignment at scaffold_418:233720..240450+ (Clytia hemisphaerica)
ATGAATTTGACATGGATGCTTACACTACAGTCCGTTATTTTCTCCACCAT
CATCTTACTGGAGACGAGTGGTGAATATTTCTCGTCGAGCGGACATATGC
GTTATTTATTTGATATAGAGAAACAACTGGCATCTCGTCTAAGAACCACC
ATTGAGCGGGAGGAGCGCCGAATAGCAGAGctgaagaaattttataataA
GATTGAACATattgagaagaaagaagatgaaAGGAATTATATCGGACATC
CGAATAACGCGTTCAAAATCTTGAGAAGACTGCATCGTGATTGGCCTAAA
GTTCAGAAAGTAGCTGAACGGAACCACGAGGAATTTTCAGAGTTCTATGC
ACAATATGGCAATCTACTACCATCCGCCGATGATGTGGACGGTGCCCGCG
CGGCCTTGTTGCGGCTTCAGGAGACGTTCGCATTGTCTGCAAGTCAAATA
TTGAATGGAATTGTCCCAGCTTCGAACGGGTTCACCAAACTATCGGCATC
AGACGCGTACGATATTGGCCGCATGGCGTACACTGATAAAAGATATGATG
TGACGATAGGTTGGATGAAAGAAGCGTTAAAAATAGTTGATACAAGTAAC
CATGGAGATGGTTTACCAAGCAAAGTAAATATTCTGGACCATTTGGCATG
GTCAGAGTATAAGATCAATCGAATGAGTGACGCGCTAAACCATACCAACC
AATTATTGAAACTTGACCCTGAGAACGATCGTATCCAACGTAACAAAGAA
GCCTTTGAAAATTACCTCCTCGAGGGCGTGGAGGCGGAGGGCGAGAAAAA
TCTTGAAGAAAGACTCGCACCTCATGAGTTTCCTCACTTTTATTACACCC
CTGATGAAAACGACTTTGAGCGGTATCACATTGAACGCAAATTGTGGCAA
AAATTATGTCGTGGTGAAACCAAACCTGTGATGAATTTGACATGGATGCT
TACACTACAGTCCGTTATTTTCTCCACCATCATCTTACTGGAGACGAGTG
GTGAATATTTCTCGTCGAGCGGACATATGCGTTATTTATTTGATATAGAG
AAACAACTGGCATCTCGTCTAAGAACCACCATTGAGCGGGAGGAGCGCCG
AATAGCAGAGctgaagaaattttataataAGATTGAACATattgagaaga
aagaagatgaaAGGAATTATATCGGACATCCGAATAACGCGTTCAAAATC
TTGAGAAGACTGCATCGTGATTGGCCTAAAGTTCAGAAAGTAGCTGAACG
GAACCACGAGGAATTTTCAGAGTTCTATGCACAATATGGCAATCTACTAC
CATCCGCCGATGATGTGGACGGTGCCCGCGCGGCCTTGTTGCGGCTTCAG
GAGACGTTCGCATTGTCTGCAAGTCAAATATTGAATGGAATTGTCCCAGC
TTCGAACGGGTTCACCAAACTATCGGCATCAGACGCGTACGATATTGGCC
GCATGGCGTACACTGATAAAAGATATGATGTGACGATAGGTTGGATGAAA
GAAGCGTTAAAAATAGTTGATACAAGTAACCATGGAGATGGTTTACCAAG
CAAAGTAAATATTCTGGACCATTTGGCATGGTCAGAGTATAAGATCAATC
GAATGAGTGACGCGCTAAACCATACCAACCAATTATTGAAACTTGACCCT
GAGAACGATCGTATCCAACGTAACAAAGAAGCCTTTGAAAATTACCTCCT
CGAGGGCGTGGAGGCGGAGGGCGAGAAAAATCTTGAAGAAAGACTCGCAC
CTCATGAGTTTCCTCACTTTTATTACACCCCTGATGAAAACGACTTTGAG
CGGTATCACATTGAACGCAAATTGTGGCAAAAATTATGTCGTGGTGAAAC
CAAACCTGTGATGAATTTGACATGGATGCTTACACTACAGTCCGTTATTT
TCTCCACCATCATCTTACTGGAGACGAGTGGTGAATATTTCTCGTCGAGC
GGACATATGCGTTATTTATTTGATATAGAGAAACAACTGGCATCTCGTCT
AAGAACCACCATTGAGCGGGAGGAGCGCCGAATAGCAGAGctgaagaaat
tttataataAGATTGAACATattgagaagaaagaagatgaaAGGAATTAT
ATCGGACATCCGAATAACGCGTTCAAAATCTTGAGAAGACTGCATCGTGA
TTGGCCTAAAGTTCAGAAAGTAGCTGAACGGAACCACGAGGAATTTTCAG
AGTTCTATGCACAATATGGCAATCTACTACCATCCGCCGATGATGTGGAC
GGTGCCCGCGCGGCCTTGTTGCGGCTTCAGGAGACGTTCGCATTGTCTGC
AAGTCAAATATTGAATGGAATTGTCCCAGCTTCGAACGGGTTCACCAAAC
TATCGGCATCAGACGCGTACGATATTGGCCGCATGGCGTACACTGATAAA
AGATATGATGTGACGATAGGTTGGATGAAAGAAGCGTTAAAAATAGTTGA
TACAAGTAACCATGGAGATGGTTTACCAAGCAAAGTAAATATTCTGGACC
ATTTGGCATGGTCAGAGTATAAGATCAATCGAATGAGTGACGCGCTAAAC
CATACCAACCAATTATTGAAACTTGACCCTGAGAACGATCGTATCCAACG
TAACAAAGAAGCCTTTGAAAATTACCTCCTCGAGGGCGTGGAGGCGGAGG
GCGAGAAAAATCTTGAAGAAAGACTCGCACCTCATGAGTTTCCTCACTTT
TATTACACCCCTGATGAAAACGACTTTGAGCGGTATCACATTGAACGCAA
ATTGTGGCAAAAATTATGTCGTGGTGAAACCAAACCTGTGATGAATTTGA
CATGGATGCTTACACTACAGTCCGTTATTTTCTCCACCATCATCTTACTG
GAGACGAGTGGTGAATATTTCTCGTCGAGCGGACATATGCGTTATTTATT
TGATATAGAGAAACAACTGGCATCTCGTCTAAGAACCACCATTGAGCGGG
AGGAGCGCCGAATAGCAGAGctgaagaaattttataataAGATTGAACAT
attgagaagaaagaagatgaaAGGAATTATATCGGACATCCGAATAACGC
GTTCAAAATCTTGAGAAGACTGCATCGTGATTGGCCTAAAGTTCAGAAAG
TAGCTGAACGGAACCACGAGGAATTTTCAGAGTTCTATGCACAATATGGC
AATCTACTACCATCCGCCGATGATGTGGACGGTGCCCGCGCGGCCTTGTT
GCGGCTTCAGGAGACGTTCGCATTGTCTGCAAGTCAAATATTGAATGGAA
TTGTCCCAGCTTCGAACGGGTTCACCAAACTATCGGCATCAGACGCGTAC
GATATTGGCCGCATGGCGTACACTGATAAAAGATATGATGTGACGATAGG
TTGGATGAAAGAAGCGTTAAAAATAGTTGATACAAGTAACCATGGAGATG
GTTTACCAAGCAAAGTAAATATTCTGGACCATTTGGCATGGTCAGAGTAT
AAGATCAATCGAATGAGTGACGCGCTAAACCATACCAACCAATTATTGAA
ACTTGACCCTGAGAACGATCGTATCCAACGTAACAAAGAAGCCTTTGAAA
ATTACCTCCTCGAGGGCGTGGAGGCGGAGGGCGAGAAAAATCTTGAAGAA
AGACTCGCACCTCATGAGTTTCCTCACTTTTATTACACCCCTGATGAAAA
CGACTTTGAGCGGTATCACATTGAACGCAAATTGTGGCAAAAATTATGTC
GTGGTGAAACCAAACCTGTGATGAATTTGACATGGATGCTTACACTACAG
TCCGTTATTTTCTCCACCATCATCTTACTGGAGACGAGTGGTGAATATTT
CTCGTCGAGCGGACATATGCGTTATTTATTTGATATAGAGAAACAACTGG
CATCTCGTCTAAGAACCACCATTGAGCGGGAGGAGCGCCGAATAGCAGAG
ctgaagaaattttataataAGATTGAACATattgagaagaaagaagatga
aAGGAATTATATCGGACATCCGAATAACGCGTTCAAAATCTTGAGAAGAC
TGCATCGTGATTGGCCTAAAGTTCAGAAAGTAGCTGAACGGAACCACGAG
GAATTTTCAGAGTTCTATGCACAATATGGCAATCTACTACCATCCGCCGA
TGATGTGGACGGTGCCCGCGCGGCCTTGTTGCGGCTTCAGGAGACGTTCG
CATTGTCTGCAAGTCAAATATTGAATGGAATTGTCCCAGCTTCGAACGGG
TTCACCAAACTATCGGCATCAGACGCGTACGATATTGGCCGCATGGCGTA
CACTGATAAAAGATATGATGTGACGATAGGTTGGATGAAAGAAGCGTTAA
AAATAGTTGATACAAGTAACCATGGAGATGGTTTACCAAGCAAAGTAAAT
ATTCTGGACCATTTGGCATGGTCAGAGTATAAGATCAATCGAATGAGTGA
CGCGCTAAACCATACCAACCAATTATTGAAACTTGACCCTGAGAACGATC
GTATCCAACGTAACAAAGAAGCCTTTGAAAATTACCTCCTCGAGGGCGTG
GAGGCGGAGGGCGAGAAAAATCTTGAAGAAAGACTCGCACCTCATGAGTT
TCCTCACTTTTATTACACCCCTGATGAAAACGACTTTGAGCGGTATCACA
TTGAACGCAAATTGTGGCAAAAATTATGTCGTGGTGAAACCAAACCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040451XLOC_040451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064498-exon-scaffold_418-1491911889:233720..233921TCONS_00064498-exon-scaffold_418-1491911889:233720..233921Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1510915933:233720..233921TCONS_00064498-exon-scaffold_418-1510915933:233720..233921Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1575043694:233720..233921TCONS_00064498-exon-scaffold_418-1575043694:233720..233921Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1491911889:237461..237893TCONS_00064498-exon-scaffold_418-1491911889:237461..237893Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1510915933:237461..237893TCONS_00064498-exon-scaffold_418-1510915933:237461..237893Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1575043694:237461..237893TCONS_00064498-exon-scaffold_418-1575043694:237461..237893Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1491911889:238784..238945TCONS_00064498-exon-scaffold_418-1491911889:238784..238945Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1510915933:238784..238945TCONS_00064498-exon-scaffold_418-1510915933:238784..238945Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1575043694:238784..238945TCONS_00064498-exon-scaffold_418-1575043694:238784..238945Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1491911889:239238..239407TCONS_00064498-exon-scaffold_418-1491911889:239238..239407Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1510915933:239238..239407TCONS_00064498-exon-scaffold_418-1510915933:239238..239407Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1575043694:239238..239407TCONS_00064498-exon-scaffold_418-1575043694:239238..239407Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1491911889:239737..239788TCONS_00064498-exon-scaffold_418-1491911889:239737..239788Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1510915933:239737..239788TCONS_00064498-exon-scaffold_418-1510915933:239737..239788Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1575043694:239737..239788TCONS_00064498-exon-scaffold_418-1575043694:239737..239788Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1491911889:240235..240450TCONS_00064498-exon-scaffold_418-1491911889:240235..240450Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1510915933:240235..240450TCONS_00064498-exon-scaffold_418-1510915933:240235..240450Clytia hemisphaericaexon
TCONS_00064498-exon-scaffold_418-1575043694:240235..240450TCONS_00064498-exon-scaffold_418-1575043694:240235..240450Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064498-proteinTCONS_00064498-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:233720..240450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.5771	20.1306	15.6216	14.0192	48.1235	37.2172	50.947	50.0683	20.3972	19.1654	14.8539	10.4553	11.9815	8.93218	21.6181	16.9413	58.0423	61.2209	7.53537	12.5394	32.5968	35.3705	29.7751	33.1975	46.9268	44.7968	10.3837	8.09628	46.9383	43.2477
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013547Pro_4_hyd_alph_N
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004656procollagen-proline 4-dioxygenase activity
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0004656 procollagen-proline 4-dioxygenase activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00064498 vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.345e-35
Identity = 99/308 (32.14%), Postives = 158/308 (51.30%), Query Frame = 2 
Query:  317 WMLTLQSVIFSTIILLETSGEYFSSSGHMRYLFDIEKQLASXXXXXXXXXXXXXXXXKKFYNKIEHIEKKE--DERNYIGHPNNAFKILRRLHRDWPKVQK-VAERNHEEFSEFYAQYGNLLPSADDVDGARAALLRLQETFALSASQILNGIVPASNGFTKLSASDAYDIGRMAYTDKRYDVTIGWMKEALKIVDTSNHGDGLPSKVNILDHLAWSEYKINRMSDALNHTNQLLKLDPENDRIQRNKEAFENYLLEGVEAEGEKNLEERLAPHEFPHFYYTPDENDFER---YHIERKLWQKLCRGE 1222
            W+  L    F  +  ++   E+F+S GHM  L   EK+L   L+  I  EE +++++K + NK+E +  K   D   Y+ HP NA+K+++RL+ DWP ++  V + +   F    +      P+ +D  GA  AL+RLQ+T+ L    I  G +P +     LS  D + +GR AY +  Y  T+ WM++ LK +D     +   +K  +LD+L+++ +++  +  AL  T +LL LDP ++R   N   FE  L E  E       E  LA         TP E  +ER   Y  ER +++ LCRGE
Sbjct:    4 WVSALLMAWFGVLSCVQ--AEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKMEALTSKSAADAEGYLAHPVNAYKLVKRLNTDWPALEDLVLQDSAAGFIANLSVQRQFFPTDEDEIGAAKALMRLQDTYRLDPGTISRGELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGE--EATTTKSQVLDYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEEEREKTLTNQTEAELA---------TP-EGIYERPVDYLPERDVYESLCRGE 297
The following BLAST results are available for this feature:
BLAST of TCONS_00064498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HA22.345e-3532.14Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
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