TCONS_00064454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064454
Unique NameTCONS_00064454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064454 ID=TCONS_00064454|Name=TCONS_00064454|organism=Clytia hemisphaerica|type=transcript|length=1797bp
ATACCTTGTAACAAACAATATACTAAAAAACAGAAGATACCCAGTCTATT
GTGTATATCTTTTGTCAACGTTACAATATCACAATTAATTAATAACCTAA
CCAACACAATTACTGATTTTATGGGATTCGAAACAACTAGCGAAGTCATT
TTTTTTATGATGATGATTTCCTGAAGTTAATGACCGTTCGCTTAATAGGG
TATAAATACCAGTCTATAATATCTATACTCTGTCAGTTGCATAGTAGACA
ATTTCGAAGAAAGTCATACTGAAAGAAAAGGCAGGCCTTCGAAAGCAACT
TAATTTATTTGATaagaaacttgatttttttaattttacttaaCTTGACA
ACACACGCGTTGAACGCTGAAAGTCAAGGATTTGGCAACacattttgaag
atatttttctaCTTGCTTTCGAATCGTCACATACACACTACGCAAATATG
ATGAAAACAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTT
GTATCATCCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTA
GTGCTGGGTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCC
AGTACCAGTTTctacgaaagtgaaagtgaagagTCGTTCCCAGGGTCACC
TTTCAGTAACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTG
ATTTCTCAGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAAC
CAAACAAATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCT
ACAACCACTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGA
CACATACACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCA
CCTAACTACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAA
CCACCGTGAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCAC
CTGTTCCCTCGCCTCCATCCCCTCCTCggaacatcaaaacattcgaaatc
aaAGTGGAATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTC
AGAAGATAGTAATGATAAGATTCGACTTTACGAATTTGTCTTACAATTAT
TGAACGAAGAAAGAGCTGATTGCATCAGATGGTTGTGTCCTATCGAAGGT
GAATTCGAGATTACAAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGGT
CAAGAAAAACCCGACTATGACATACGAAAAATTCGCACGAGCTTTACGAC
ATTATTACAAACTGGGCATATTGATCAATTacaaacacaaagaaaaatta
cgCTACAAATTCTCACAAGATATTCTTCAAAAGAACAAGCGGACTGAtgc
ttaaaaatttcattttattttttatgaaaaataattttgttttgatatgt
tttataTATtactaatttcaaattttttttttcgtttataATTTATCGac
aaaatttgaacttttctGTGGAcggaaaagtttttaaaaaaacctAAAAC
ATACCTTCACTcataaaacattgaaataattttgtaaATACCTTGTAAAT
AGCGGTCCAGAAATTTTAGAGaatttaacaaattttttttgtatagaaaa
agtaattttataCAACCACTTTTATATTATTTCTTTGGCGAATAATGAAA
AGATTTAGCATGTTTTTCATTAACTGTAAGTTTTATTTACATATTATATA
CACACCAGGGAGAAAAAattgatccaaaaaatatccaaaaatatcAC
Run BLAST on NCBI

protein sequence of TCONS_00064454-protein

>TCONS_00064454-protein ID=TCONS_00064454-protein|Name=TCONS_00064454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MMKTKGLSHHSHSRFTPLYHPYYQTPVYNNMKTCSAGYMDTTPMPFNNFS
ASTSFYESESEESFPGSPFSNTGEQSFEGDLSTIDFSDLLNIQKHEQDDQ
NQTNQLQQILEQVSREALQPLDPVDISYSYNLSTTHTPPCFRAVSHDSYP
SPNYQPREEQPYPSPTYNHREEPFPSPNFHQMQPPVPSPPSPPRNIKTFE
IKVESGKPDPPQKRRSSSEDSNDKIRLYEFVLQLLNEERADCIRWLCPIE
GEFEITNSAKIAQLWGEVKKNPTMTYEKFARALRHYYKLGILINYKHKEK
LRYKFSQDILQKNKRTDA
Run BLAST on NCBI

transcript from alignment at scaffold_415:286040..288187-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064454 ID=TCONS_00064454|Name=TCONS_00064454|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at scaffold_415:286040..288187- (Clytia hemisphaerica)
ATACCTTGTAACAAACAATATACTAAAAAACAGAAGATACCCAGTCTATT
GTGTATATCTTTTGTCAACGTTACAATATCACAATTAATTAATAACCTAA
CCAACACAATTACTGATTTTATGGGATTCGAAACAACTAGCGAAGTCATT
TTTTTTATGATGATGATTTCCTGAAGTTAATGACCGTTCGCTTAATAGGG
TATAAATACCAGTCTATAATATCTATACTCTGTCAGTTGCATAGTAGACA
ATTTCGAAGAAAGTCATACTGAAAGAAAAGGCAGGCCTTCGAAAGCAACT
TAATTTATTTGATAAGAAACTTGATTTTTTTAATTTTACTTAACTTGACA
ACACACGCGTTGAACGCTGAAAGTCAAGGATTTGGCAACACATTTTGAAG
ATATTTTTCTACTTGCTTTCGAATCGTCACATACACACTACGCAAATATG
ATGAAAACAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTT
GTATCATCCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTA
GTGCTGGGTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCC
AGTACCAGTTTCTACGAAAGTGAAAGTGAAGAGTCGTTCCCAGGGTCACC
TTTCAGTAACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTG
ATTTCTCAGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAAC
CAAACAAATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCT
ACAACCACTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGA
CACATACACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCA
CCTAACTACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAA
CCACCGTGAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCAC
CTGTTCCCTCGCCTCCATCCCCTCCTCGGAACATCAAAACATTCGAAATC
AAAGTGGAATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTC
AGAAGATAGTAATGGTAGGTTGATTTTTTTATTTTCACTTTTTTGATTTT
CCTTTCACCGCTCGGACAGTTGCGTTTTTAATTTGCTCAAATTATGACAT
GCTTTATATAAACCTATTGTTTGTAAGAAAACTTATTGATATATGATGTT
TGACTAATGATTACCAAACGAAGGTAATTAAGTAGAAAAAAATGGCATCT
CTTTATTATCATCATCATTTTCGTTTCCAAAATGTTTTTTTTGCTATTTT
CTGTTGTGCTTGTGCTCGAAAAACTCCCACTGTTTTCAGAAATAGTTGCT
TTAGTTTCTATGTCACATTATATAACGTTGGCAATAATCATTGTTTTGTT
TGTCTTTCTCTGCAGATAAGATTCGACTTTACGAATTTGTCTTACAATTA
TTGAACGAAGAAAGAGCTGATTGCATCAGATGGTTGTGTCCTATCGAAGG
TGAATTCGAGATTACAAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGG
TCAAGAAAAACCCGACTATGACATACGAAAAATTCGCACGAGCTTTACGA
CATTATTACAAACTGGGCATATTGATCAATTACAAACACAAAGAAAAATT
ACGCTACAAATTCTCACAAGATATTCTTCAAAAGAACAAGCGGACTGATG
CTTAAAAATTTCATTTTATTTTTTATGAAAAATAATTTTGTTTTGATATG
TTTTATATATTACTAATTTCAAATTTTTTTTTTCGTTTATAATTTATCGA
CAAAATTTGAACTTTTCTGTGGACGGAAAAGTTTTTAAAAAAACCTAAAA
CATACCTTCACTCATAAAACATTGAAATAATTTTGTAAATACCTTGTAAA
TAGCGGTCCAGAAATTTTAGAGAATTTAACAAATTTTTTTTGTATAGAAA
AAGTAATTTTATACAACCACTTTTATATTATTTCTTTGGCGAATAATGAA
AAGATTTAGCATGTTTTTCATTAACTGTAAGTTTTATTTACATATTATAT
ACACACCAGGGAGAAAAAATTGATCCAAAAAATATCCAAAAATATCAC

Coding sequence (CDS) from alignment at scaffold_415:286040..288187-

>TCONS_00064454 ID=TCONS_00064454|Name=TCONS_00064454|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_415:286040..288187- (Clytia hemisphaerica)
ATAAGATTCGACTTTACGAATTTGTCTTACAATTATTGAACGAAGAAAGA
GCTGATTGCATCAGATGGTTGTGTCCTATCGAAGGTGAATTCGAGATTAC
AAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGGTCAAGAAAAACCCGA
CTATGACATACGAAAAATTCGCACGAGCTTTACGACATTATTACAAACTG
GGCATATTGATCAATTACAAACACAAAGAAAAATTACGCTACAAATTCTC
ACAAGATATTCTTCAAAAGAACAAGCGGACTGATGCTTAAATGATGAAAA
CAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTTGTATCAT
CCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTAGTGCTGG
GTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCCAGTACCA
GTTTCTACGAAAGTGAAAGTGAAGAGTCGTTCCCAGGGTCACCTTTCAGT
AACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTGATTTCTC
AGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAACCAAACAA
ATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCTACAACCA
CTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGACACATAC
ACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCACCTAACT
ACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAACCACCGT
GAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCACCTGTTCC
CTCGCCTCCATCCCCTCCTCGGAACATCAAAACATTCGAAATCAAAGTGG
AATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTCAGAAGAT
AGTAATGATAAGATTCGACTTTACGAATTTGTCTTACAATTATTGAACGA
AGAAAGAGCTGATTGCATCAGATGGTTGTGTCCTATCGAAGGTGAATTCG
AGATTACAAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGGTCAAGAAA
AACCCGACTATGACATACGAAAAATTCGCACGAGCTTTACGACATTATTA
CAAACTGGGCATATTGATCAATTACAAACACAAAGAAAAATTACGCTACA
AATTCTCACAAGATATTCTTCAAAAGAACAAGCGGACTGATGCTTAAATG
ATGAAAACAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTT
GTATCATCCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTA
GTGCTGGGTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCC
AGTACCAGTTTCTACGAAAGTGAAAGTGAAGAGTCGTTCCCAGGGTCACC
TTTCAGTAACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTG
ATTTCTCAGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAAC
CAAACAAATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCT
ACAACCACTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGA
CACATACACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCA
CCTAACTACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAA
CCACCGTGAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCAC
CTGTTCCCTCGCCTCCATCCCCTCCTCGGAACATCAAAACATTCGAAATC
AAAGTGGAATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTC
AGAAGATAGTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040417XLOC_040417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064454-proteinTCONS_00064454-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064454-exon-scaffold_415-1575043694:287074..288187TCONS_00064454-exon-scaffold_415-1575043694:287074..288187Clytia hemisphaericaexon
TCONS_00064454-exon-scaffold_415-1575043694:286040..286722TCONS_00064454-exon-scaffold_415-1575043694:286040..286722Clytia hemisphaericaexon
TCONS_00064454-exon-scaffold_415-1510915933:287074..288187TCONS_00064454-exon-scaffold_415-1510915933:287074..288187Clytia hemisphaericaexon
TCONS_00064454-exon-scaffold_415-1510915933:286040..286722TCONS_00064454-exon-scaffold_415-1510915933:286040..286722Clytia hemisphaericaexon
TCONS_00064454-exon-scaffold_415-1491911889:287074..288187TCONS_00064454-exon-scaffold_415-1491911889:287074..288187Clytia hemisphaericaexon
TCONS_00064454-exon-scaffold_415-1491911889:286040..286722TCONS_00064454-exon-scaffold_415-1491911889:286040..286722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:286040..288187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312776	0.217861	0.0505916	0.0989919	0.18077	0.190462	27.3444	31.596	45.2023	43.048	6.85828	36.1115	11.3964	5.32355	17.3164	18.5151	1.10691	2.87076	0.356237	1.64022	0.172806	0.0632164	0.12808	0.0931544	0.0719601	0.0856302	0.214439	0.294242	0.0743908	0.126321
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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