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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064454 ID=TCONS_00064454|Name=TCONS_00064454|organism=Clytia hemisphaerica|type=transcript|length=1797bp ATACCTTGTAACAAACAATATACTAAAAAACAGAAGATACCCAGTCTATT GTGTATATCTTTTGTCAACGTTACAATATCACAATTAATTAATAACCTAA CCAACACAATTACTGATTTTATGGGATTCGAAACAACTAGCGAAGTCATT TTTTTTATGATGATGATTTCCTGAAGTTAATGACCGTTCGCTTAATAGGG TATAAATACCAGTCTATAATATCTATACTCTGTCAGTTGCATAGTAGACA ATTTCGAAGAAAGTCATACTGAAAGAAAAGGCAGGCCTTCGAAAGCAACT TAATTTATTTGATaagaaacttgatttttttaattttacttaaCTTGACA ACACACGCGTTGAACGCTGAAAGTCAAGGATTTGGCAACacattttgaag atatttttctaCTTGCTTTCGAATCGTCACATACACACTACGCAAATATG ATGAAAACAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTT GTATCATCCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTA GTGCTGGGTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCC AGTACCAGTTTctacgaaagtgaaagtgaagagTCGTTCCCAGGGTCACC TTTCAGTAACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTG ATTTCTCAGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAAC CAAACAAATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCT ACAACCACTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGA CACATACACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCA CCTAACTACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAA CCACCGTGAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCAC CTGTTCCCTCGCCTCCATCCCCTCCTCggaacatcaaaacattcgaaatc aaAGTGGAATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTC AGAAGATAGTAATGATAAGATTCGACTTTACGAATTTGTCTTACAATTAT TGAACGAAGAAAGAGCTGATTGCATCAGATGGTTGTGTCCTATCGAAGGT GAATTCGAGATTACAAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGGT CAAGAAAAACCCGACTATGACATACGAAAAATTCGCACGAGCTTTACGAC ATTATTACAAACTGGGCATATTGATCAATTacaaacacaaagaaaaatta cgCTACAAATTCTCACAAGATATTCTTCAAAAGAACAAGCGGACTGAtgc ttaaaaatttcattttattttttatgaaaaataattttgttttgatatgt tttataTATtactaatttcaaattttttttttcgtttataATTTATCGac aaaatttgaacttttctGTGGAcggaaaagtttttaaaaaaacctAAAAC ATACCTTCACTcataaaacattgaaataattttgtaaATACCTTGTAAAT AGCGGTCCAGAAATTTTAGAGaatttaacaaattttttttgtatagaaaa agtaattttataCAACCACTTTTATATTATTTCTTTGGCGAATAATGAAA AGATTTAGCATGTTTTTCATTAACTGTAAGTTTTATTTACATATTATATA CACACCAGGGAGAAAAAattgatccaaaaaatatccaaaaatatcAC Run BLAST on NCBI protein sequence of TCONS_00064454-protein >TCONS_00064454-protein ID=TCONS_00064454-protein|Name=TCONS_00064454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MMKTKGLSHHSHSRFTPLYHPYYQTPVYNNMKTCSAGYMDTTPMPFNNFS ASTSFYESESEESFPGSPFSNTGEQSFEGDLSTIDFSDLLNIQKHEQDDQ NQTNQLQQILEQVSREALQPLDPVDISYSYNLSTTHTPPCFRAVSHDSYP SPNYQPREEQPYPSPTYNHREEPFPSPNFHQMQPPVPSPPSPPRNIKTFE IKVESGKPDPPQKRRSSSEDSNDKIRLYEFVLQLLNEERADCIRWLCPIE GEFEITNSAKIAQLWGEVKKNPTMTYEKFARALRHYYKLGILINYKHKEK LRYKFSQDILQKNKRTDA Run BLAST on NCBI transcript from alignment at scaffold_415:286040..288187- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064454 ID=TCONS_00064454|Name=TCONS_00064454|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at scaffold_415:286040..288187- (Clytia hemisphaerica) ATACCTTGTAACAAACAATATACTAAAAAACAGAAGATACCCAGTCTATT
GTGTATATCTTTTGTCAACGTTACAATATCACAATTAATTAATAACCTAA
CCAACACAATTACTGATTTTATGGGATTCGAAACAACTAGCGAAGTCATT
TTTTTTATGATGATGATTTCCTGAAGTTAATGACCGTTCGCTTAATAGGG
TATAAATACCAGTCTATAATATCTATACTCTGTCAGTTGCATAGTAGACA
ATTTCGAAGAAAGTCATACTGAAAGAAAAGGCAGGCCTTCGAAAGCAACT
TAATTTATTTGATAAGAAACTTGATTTTTTTAATTTTACTTAACTTGACA
ACACACGCGTTGAACGCTGAAAGTCAAGGATTTGGCAACACATTTTGAAG
ATATTTTTCTACTTGCTTTCGAATCGTCACATACACACTACGCAAATATG
ATGAAAACAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTT
GTATCATCCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTA
GTGCTGGGTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCC
AGTACCAGTTTCTACGAAAGTGAAAGTGAAGAGTCGTTCCCAGGGTCACC
TTTCAGTAACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTG
ATTTCTCAGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAAC
CAAACAAATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCT
ACAACCACTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGA
CACATACACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCA
CCTAACTACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAA
CCACCGTGAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCAC
CTGTTCCCTCGCCTCCATCCCCTCCTCGGAACATCAAAACATTCGAAATC
AAAGTGGAATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTC
AGAAGATAGTAATGGTAGGTTGATTTTTTTATTTTCACTTTTTTGATTTT
CCTTTCACCGCTCGGACAGTTGCGTTTTTAATTTGCTCAAATTATGACAT
GCTTTATATAAACCTATTGTTTGTAAGAAAACTTATTGATATATGATGTT
TGACTAATGATTACCAAACGAAGGTAATTAAGTAGAAAAAAATGGCATCT
CTTTATTATCATCATCATTTTCGTTTCCAAAATGTTTTTTTTGCTATTTT
CTGTTGTGCTTGTGCTCGAAAAACTCCCACTGTTTTCAGAAATAGTTGCT
TTAGTTTCTATGTCACATTATATAACGTTGGCAATAATCATTGTTTTGTT
TGTCTTTCTCTGCAGATAAGATTCGACTTTACGAATTTGTCTTACAATTA
TTGAACGAAGAAAGAGCTGATTGCATCAGATGGTTGTGTCCTATCGAAGG
TGAATTCGAGATTACAAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGG
TCAAGAAAAACCCGACTATGACATACGAAAAATTCGCACGAGCTTTACGA
CATTATTACAAACTGGGCATATTGATCAATTACAAACACAAAGAAAAATT
ACGCTACAAATTCTCACAAGATATTCTTCAAAAGAACAAGCGGACTGATG
CTTAAAAATTTCATTTTATTTTTTATGAAAAATAATTTTGTTTTGATATG
TTTTATATATTACTAATTTCAAATTTTTTTTTTCGTTTATAATTTATCGA
CAAAATTTGAACTTTTCTGTGGACGGAAAAGTTTTTAAAAAAACCTAAAA
CATACCTTCACTCATAAAACATTGAAATAATTTTGTAAATACCTTGTAAA
TAGCGGTCCAGAAATTTTAGAGAATTTAACAAATTTTTTTTGTATAGAAA
AAGTAATTTTATACAACCACTTTTATATTATTTCTTTGGCGAATAATGAA
AAGATTTAGCATGTTTTTCATTAACTGTAAGTTTTATTTACATATTATAT
ACACACCAGGGAGAAAAAATTGATCCAAAAAATATCCAAAAATATCAC Coding sequence (CDS) from alignment at scaffold_415:286040..288187- >TCONS_00064454 ID=TCONS_00064454|Name=TCONS_00064454|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_415:286040..288187- (Clytia hemisphaerica) ATAAGATTCGACTTTACGAATTTGTCTTACAATTATTGAACGAAGAAAGA GCTGATTGCATCAGATGGTTGTGTCCTATCGAAGGTGAATTCGAGATTAC AAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGGTCAAGAAAAACCCGA CTATGACATACGAAAAATTCGCACGAGCTTTACGACATTATTACAAACTG GGCATATTGATCAATTACAAACACAAAGAAAAATTACGCTACAAATTCTC ACAAGATATTCTTCAAAAGAACAAGCGGACTGATGCTTAAATGATGAAAA CAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTTGTATCAT CCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTAGTGCTGG GTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCCAGTACCA GTTTCTACGAAAGTGAAAGTGAAGAGTCGTTCCCAGGGTCACCTTTCAGT AACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTGATTTCTC AGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAACCAAACAA ATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCTACAACCA CTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGACACATAC ACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCACCTAACT ACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAACCACCGT GAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCACCTGTTCC CTCGCCTCCATCCCCTCCTCGGAACATCAAAACATTCGAAATCAAAGTGG AATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTCAGAAGAT AGTAATGATAAGATTCGACTTTACGAATTTGTCTTACAATTATTGAACGA AGAAAGAGCTGATTGCATCAGATGGTTGTGTCCTATCGAAGGTGAATTCG AGATTACAAATTCTGCTAAAATCGCTCAACTGTGGGGTGAGGTCAAGAAA AACCCGACTATGACATACGAAAAATTCGCACGAGCTTTACGACATTATTA CAAACTGGGCATATTGATCAATTACAAACACAAAGAAAAATTACGCTACA AATTCTCACAAGATATTCTTCAAAAGAACAAGCGGACTGATGCTTAAATG ATGAAAACAAAAGGATTATCGCATCATTCACACTCTCGCTTCACACCGTT GTATCATCCATACTACCAAACACCTGTTTACAATAATATGAAGACTTGTA GTGCTGGGTATATGGATACAACACCAATGCCGTTCAATAACTTCAGCGCC AGTACCAGTTTCTACGAAAGTGAAAGTGAAGAGTCGTTCCCAGGGTCACC TTTCAGTAACACCGGTGAACAATCATTTGAAGGTGATCTCAGCACCATTG ATTTCTCAGACTTGTTAAATATTCAAAAACATGAACAGGATGACCAGAAC CAAACAAATCAGCTACAACAGATCTTGGAGCAAGTCAGTCGTGAAGCGCT ACAACCACTTGACCCTGTCGATATTTCGTACTCTTACAACCTAAGTACGA CACATACACCTCCATGCTTCCGCGCCGTCAGCCATGATTCTTATCCATCA CCTAACTACCAGCCACGAGAAGAGCAACCCTACCCTTCGCCGACCTACAA CCACCGTGAGGAGCCCTTCCCATCACCCAACTTTCACCAGATGCAACCAC CTGTTCCCTCGCCTCCATCCCCTCCTCGGAACATCAAAACATTCGAAATC AAAGTGGAATCTGGCAAACCTGACCCACCTCAAAAACGAAGATCAAGCTC AGAAGATAGTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064454-exon-scaffold_415-1575043694:287074..288187 | TCONS_00064454-exon-scaffold_415-1575043694:287074..288187 | Clytia hemisphaerica | exon |
TCONS_00064454-exon-scaffold_415-1575043694:286040..286722 | TCONS_00064454-exon-scaffold_415-1575043694:286040..286722 | Clytia hemisphaerica | exon |
TCONS_00064454-exon-scaffold_415-1510915933:287074..288187 | TCONS_00064454-exon-scaffold_415-1510915933:287074..288187 | Clytia hemisphaerica | exon |
TCONS_00064454-exon-scaffold_415-1510915933:286040..286722 | TCONS_00064454-exon-scaffold_415-1510915933:286040..286722 | Clytia hemisphaerica | exon |
TCONS_00064454-exon-scaffold_415-1491911889:287074..288187 | TCONS_00064454-exon-scaffold_415-1491911889:287074..288187 | Clytia hemisphaerica | exon |
TCONS_00064454-exon-scaffold_415-1491911889:286040..286722 | TCONS_00064454-exon-scaffold_415-1491911889:286040..286722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_415 | supercontig | scaffold_415:286040..288187 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
molecular_function |
GO:0043565 |
sequence-specific DNA binding |
molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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