TCONS_00049966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049966
Unique NameTCONS_00049966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049966 ID=TCONS_00049966|Name=TCONS_00049966|organism=Clytia hemisphaerica|type=transcript|length=1127bp
AAGCTTCTTCAACCTCAACCAATCAAACTGCTGGACGATTATTGGGTCAA
TTATTGGGCAAATCACAGACCTTCACAGACCTTCAACAAAATGTCATTAT
GTTGAAACAATCTACAAAACAACTGCAAAAAGAACTTCAACATCTAAAGG
GTGAAGTTGGATATCtgaaaaagcttcaaaaatattatttcccTTGCGTA
CCAATCGAAGACAGTGATGTATATGATTGTACTGATGTTGTACCAATGAA
GGACTGTCTTGCATTCTCACAAGCTGGCTTTCGAAAGAATGGTTTGTACA
GAATACGCCCTGGACAAGCAAGGAACATTACCGTTTTTTGCGATCAAACC
AGTGAAGGAGGTGGTTTCACAACAATCATGCGTCGCCAAGATGGTTCTGT
CAATTTTCAAAGACCCTGGAAAGATTACAAGTTcggatttggaaaacttt
taacCGAATTTTGGTTCGGAAATGNATGGCTCTGTCAATTTCCAAAGACC
CTGGAAAGATTACAAGTTCGGATTTGGAAAGCTTTTAACTGGATTTTGGT
TCGGAAATGAAAATATGCACGATCTCACCAAACCTACCTTTGCGCCCAAA
AGCTCCACACTGCTCATCAATATGCGAATGAAAGGACAAACAAAACCAGT
TTATGCAAAATATGATACTTTTGAAATTGGAGATGAGGCGAGCAAATACA
CATTGAAGATCAGCAGTGTGTCAGGCAACGCATCCCATTTAACCGGATTT
CTTGGTCGCCATAACAACATGAAGTTTTCAACGTATGATCAGGATAATGA
CAACTATTTTGGCCATTGTTCGACTTACTACGGAAGAGTTGGCTGGTGGT
TCAATGATTGTTACACCACGCTTTTGACTGGAGATTACAAATTTACCAAG
GGAACCAGCAATGGGGAAATCTCTTGGTATAATGGCAAGGAAGTCGAACC
CGAGTTTGTCGAGATGATGACGCGCCGTAAGCTCTAATGAAGAACGAAAA
GaAGCTCGGAAAAAGGAAACCAAAACCGCAAAACGAACAAACTGAAGATT
TCGATACGATCAAATGGggaataattttattttttaggacTAGTTATATT
TCTAAATTgtattcttgaacttttatg
Run BLAST on NCBI

protein sequence of TCONS_00049966-protein

>TCONS_00049966-protein ID=TCONS_00049966-protein|Name=TCONS_00049966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
ASSTSTNQTAGRLLGQLLGKSQTFTDLQQNVIMLKQSTKQLQKELQHLKG
EVGYLKKLQKYYFPCVPIEDSDVYDCTDVVPMKDCLAFSQAGFRKNGLYR
IRPGQARNITVFCDQTSEGGGFTTIMRRQDGSVNFQRPWKDYKFGFGKLL
TEFWFGNXWLCQFPKTLERLQVRIWKAFNWILVRK
Run BLAST on NCBI

transcript from alignment at scaffold_167:1482924..1484646+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049966 ID=TCONS_00049966|Name=TCONS_00049966|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at scaffold_167:1482924..1484646+ (Clytia hemisphaerica)
AAGCTTCTTCAACCTCAACCAATCAAACTGCTGGACGATTATTGGGTCAA TTATTGGGCAAATCACAGACCTTCACAGACCTTCAACAAAATGTCATTAT GTTGAAACAATCTACAAAACAACTGCAAAAAGAACTTCAACATCTAAAGG GTGAAGTTGGATATCtgaaaaagcttcaaaaatattatttcccTTGCGTA CCAATCGAAGACAGTGATGTATATGATTGTACTGATGTTGTACCAATGAA GGACTGTCTTGCATTCTCACAAGCTGGCTTTCGAAAGAATGGTTTGTACA GAATACGCCCTGGACAAGCAAGGAACATTACCGTTTTTTGCGATCAAACC AGTGAAGGAGGTGGTTTCACAACAATCATGCGTCGCCAAGATGGTTCTGT CAATTTTCAAAGACCCTGGAAAGATTACAAGTTcggatttggaaaacttt taacCGAATTTTGGTTCGGAAATGNATGGCTCTGTCAATTTCCAAAGACC CTGGAAAGATTACAAGTTCGGATTTGGAAAGCTTTTAACTGGATTTTGGT TCGGAAATGAAAATATGCACGATCTCACCAAACCTACCTTTGCGCCCAAA AGCTCCACACTGCTCATCAATATGCGAATGAAAGGACAAACAAAACCAGT TTATGCAAAATATGATACTTTTGAAATTGGAGATGAGGCGAGCAAATACA CATTGAAGATCAGCAGTGTGTCAGGCAACGCATCCCATTTAACCGGATTT CTTGGTCGCCATAACAACATGAAGTTTTCAACGTATGATCAGGATAATGA CAACTATTTTGGCCATTGTTCGACTTACTACGGAAGAGTTGGCTGGTGGT TCAATGATTGTTACACCACGCTTTTGACTGGAGATTACAAATTTACCAAG GGAACCAGCAATGGGGAAATCTCTTGGTATAATGGCAAGGAAGTCGAACC CGAGTTTGTCGAGATGATGACGCGCCGTAAGCTCTAATGAAGAACGAAAA GGTATGATATGATCCTAACAAAATGcaagaaatcaaactttttattCAGG GACAGGttagagtttttacaagctcttatttcattttggttggtcgttaa cctgtataaaaaacaattttgctgCTTTCTCTAAAGAATTCGTCATTTCT ATTACGTCAAATGaccaaattataaaaatcttataaaaactcaacccttt atttgaaattaatttaCAAGACTTCTGTTTTCCTGGAGCGTGGCAGGCTG TATCATTTGAGGCGTGCGATAGTacgcgcacacctccacacacacctgAA ATGTCTTAGGAGTGCGATTTATTGCAAACCATAAAATTAGTTTTACAACT CAAAGTTGAGCATAGCACTCCTAATCACACGtctaaattactaaaattaa ggttttaggagtgtgattgaccacaccatggaattttcaaatgatgcagc cAGTGGTTACTACGAATAATGAAAAAGCTAAGAGTTTTTTATACTTGAAA CCCATAGGTCCcttctttgtttacattttgagaTCAAATAGACATCAtga gaaaactaaaaaactaacgatacaaaacttttttttcttctttctagaAG CTCGGAAAAAGGAAACCAAAACCGCAAAACGAACAAACTGAAGATTTCGA TACGATCAAATGGggaataattttattttttaggacTAGTTATATTTCTA AATTgtattcttgaacttttatg

Coding sequence (CDS) from alignment at scaffold_167:1482924..1484646+

>TCONS_00049966 ID=TCONS_00049966|Name=TCONS_00049966|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_167:1482924..1484646+ (Clytia hemisphaerica)
GCTTCTTCAACCTCAACCAATCAAACTGCTGGACGATTATTGGGTCAATT
ATTGGGCAAATCACAGACCTTCACAGACCTTCAACAAAATGTCATTATGT
TGAAACAATCTACAAAACAACTGCAAAAAGAACTTCAACATCTAAAGGGT
GAAGTTGGATATCtgaaaaagcttcaaaaatattatttcccTTGCGTACC
AATCGAAGACAGTGATGTATATGATTGTACTGATGTTGTACCAATGAAGG
ACTGTCTTGCATTCTCACAAGCTGGCTTTCGAAAGAATGGTTTGTACAGA
ATACGCCCTGGACAAGCAAGGAACATTACCGTTTTTTGCGATCAAACCAG
TGAAGGAGGTGGTTTCACAACAATCATGCGTCGCCAAGATGGTTCTGTCA
ATTTTCAAAGACCCTGGAAAGATTACAAGTTcggatttggaaaactttta
acCGAATTTTGGTTCGGAAATGNATGGCTCTGTCAATTTCCAAAGACCCT
GGAAAGATTACAAGTTCGGATTTGGAAAGCTTTTAACTGGATTTTGGTTC
GGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031663XLOC_031663Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049966-proteinTCONS_00049966-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049966-exon-scaffold_167-1491911889:1482924..1483924TCONS_00049966-exon-scaffold_167-1491911889:1482924..1483924Clytia hemisphaericaexon
TCONS_00049966-exon-scaffold_167-1510915933:1482924..1483924TCONS_00049966-exon-scaffold_167-1510915933:1482924..1483924Clytia hemisphaericaexon
TCONS_00049966-exon-scaffold_167-1575043694:1482924..1483924TCONS_00049966-exon-scaffold_167-1575043694:1482924..1483924Clytia hemisphaericaexon
TCONS_00049966-exon-scaffold_167-1491911889:1484521..1484646TCONS_00049966-exon-scaffold_167-1491911889:1484521..1484646Clytia hemisphaericaexon
TCONS_00049966-exon-scaffold_167-1510915933:1484521..1484646TCONS_00049966-exon-scaffold_167-1510915933:1484521..1484646Clytia hemisphaericaexon
TCONS_00049966-exon-scaffold_167-1575043694:1484521..1484646TCONS_00049966-exon-scaffold_167-1575043694:1484521..1484646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1482924..1484646 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0386468 0.060855 0 0 1.32993 0.961026 2.53401 2.69691 3.68691 2.17247 5.35423 2.05247 2.29688 3.26954 24.996 33.8919 2.45641 2.34704 5.26789 6.37111 3.02586 3.15613 13.2352 10.3672 9.67522 13.3729 1.00896 2.06199 38.0132 46.1932
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
BLAST of TCONS_00049966 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.477e-24
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  460 FGSEMXGSVNFQRPWKDYKFGFGKLLTGFWFGNENMHDLTKPTFAPKSSTLLINMRMKGQTKPVYAKYDTFEIGDEASKYTLKISS-VSGNASHLTGFLGRHNNMKFSTYDQDNDNYFGHCSTYYGRVGWWFNDCYTTLLTGDY-KFTKGTSNGEISWYNGK 939
            F   + GSV+F R W  YK GFG  L  FW GN+N+H LT    A  +S L +++ +  +    +AKY +F++ DEA KY L + + V G+A     F   HNN  FST DQDND   G+C+  + +  WW+ +C+ + L G Y + T G+    I+W +GK
Sbjct:  145 FQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALT----AQGTSELRVDL-VDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTF---HNNQSFSTKDQDNDLNTGNCAVMF-QGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGK 297          
The following BLAST results are available for this feature:
BLAST of TCONS_00049966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN28.477e-2438.89Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2[more]
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