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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049966 ID=TCONS_00049966|Name=TCONS_00049966|organism=Clytia hemisphaerica|type=transcript|length=1127bp
AAGCTTCTTCAACCTCAACCAATCAAACTGCTGGACGATTATTGGGTCAA
TTATTGGGCAAATCACAGACCTTCACAGACCTTCAACAAAATGTCATTAT
GTTGAAACAATCTACAAAACAACTGCAAAAAGAACTTCAACATCTAAAGG
GTGAAGTTGGATATCtgaaaaagcttcaaaaatattatttcccTTGCGTA
CCAATCGAAGACAGTGATGTATATGATTGTACTGATGTTGTACCAATGAA
GGACTGTCTTGCATTCTCACAAGCTGGCTTTCGAAAGAATGGTTTGTACA
GAATACGCCCTGGACAAGCAAGGAACATTACCGTTTTTTGCGATCAAACC
AGTGAAGGAGGTGGTTTCACAACAATCATGCGTCGCCAAGATGGTTCTGT
CAATTTTCAAAGACCCTGGAAAGATTACAAGTTcggatttggaaaacttt
taacCGAATTTTGGTTCGGAAATGNATGGCTCTGTCAATTTCCAAAGACC
CTGGAAAGATTACAAGTTCGGATTTGGAAAGCTTTTAACTGGATTTTGGT
TCGGAAATGAAAATATGCACGATCTCACCAAACCTACCTTTGCGCCCAAA
AGCTCCACACTGCTCATCAATATGCGAATGAAAGGACAAACAAAACCAGT
TTATGCAAAATATGATACTTTTGAAATTGGAGATGAGGCGAGCAAATACA
CATTGAAGATCAGCAGTGTGTCAGGCAACGCATCCCATTTAACCGGATTT
CTTGGTCGCCATAACAACATGAAGTTTTCAACGTATGATCAGGATAATGA
CAACTATTTTGGCCATTGTTCGACTTACTACGGAAGAGTTGGCTGGTGGT
TCAATGATTGTTACACCACGCTTTTGACTGGAGATTACAAATTTACCAAG
GGAACCAGCAATGGGGAAATCTCTTGGTATAATGGCAAGGAAGTCGAACC
CGAGTTTGTCGAGATGATGACGCGCCGTAAGCTCTAATGAAGAACGAAAA
GaAGCTCGGAAAAAGGAAACCAAAACCGCAAAACGAACAAACTGAAGATT
TCGATACGATCAAATGGggaataattttattttttaggacTAGTTATATT
TCTAAATTgtattcttgaacttttatg Run BLAST on NCBI protein sequence of TCONS_00049966-protein >TCONS_00049966-protein ID=TCONS_00049966-protein|Name=TCONS_00049966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
ASSTSTNQTAGRLLGQLLGKSQTFTDLQQNVIMLKQSTKQLQKELQHLKG
EVGYLKKLQKYYFPCVPIEDSDVYDCTDVVPMKDCLAFSQAGFRKNGLYR
IRPGQARNITVFCDQTSEGGGFTTIMRRQDGSVNFQRPWKDYKFGFGKLL
TEFWFGNXWLCQFPKTLERLQVRIWKAFNWILVRK Run BLAST on NCBI transcript from alignment at scaffold_167:1482924..1484646+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049966 ID=TCONS_00049966|Name=TCONS_00049966|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at scaffold_167:1482924..1484646+ (Clytia hemisphaerica)
AAGCTTCTTCAACCTCAACCAATCAAACTGCTGGACGATTATTGGGTCAA
TTATTGGGCAAATCACAGACCTTCACAGACCTTCAACAAAATGTCATTAT
GTTGAAACAATCTACAAAACAACTGCAAAAAGAACTTCAACATCTAAAGG
GTGAAGTTGGATATCtgaaaaagcttcaaaaatattatttcccTTGCGTA
CCAATCGAAGACAGTGATGTATATGATTGTACTGATGTTGTACCAATGAA
GGACTGTCTTGCATTCTCACAAGCTGGCTTTCGAAAGAATGGTTTGTACA
GAATACGCCCTGGACAAGCAAGGAACATTACCGTTTTTTGCGATCAAACC
AGTGAAGGAGGTGGTTTCACAACAATCATGCGTCGCCAAGATGGTTCTGT
CAATTTTCAAAGACCCTGGAAAGATTACAAGTTcggatttggaaaacttt
taacCGAATTTTGGTTCGGAAATGNATGGCTCTGTCAATTTCCAAAGACC
CTGGAAAGATTACAAGTTCGGATTTGGAAAGCTTTTAACTGGATTTTGGT
TCGGAAATGAAAATATGCACGATCTCACCAAACCTACCTTTGCGCCCAAA
AGCTCCACACTGCTCATCAATATGCGAATGAAAGGACAAACAAAACCAGT
TTATGCAAAATATGATACTTTTGAAATTGGAGATGAGGCGAGCAAATACA
CATTGAAGATCAGCAGTGTGTCAGGCAACGCATCCCATTTAACCGGATTT
CTTGGTCGCCATAACAACATGAAGTTTTCAACGTATGATCAGGATAATGA
CAACTATTTTGGCCATTGTTCGACTTACTACGGAAGAGTTGGCTGGTGGT
TCAATGATTGTTACACCACGCTTTTGACTGGAGATTACAAATTTACCAAG
GGAACCAGCAATGGGGAAATCTCTTGGTATAATGGCAAGGAAGTCGAACC
CGAGTTTGTCGAGATGATGACGCGCCGTAAGCTCTAATGAAGAACGAAAA
GGTATGATATGATCCTAACAAAATGcaagaaatcaaactttttattCAGG
GACAGGttagagtttttacaagctcttatttcattttggttggtcgttaa
cctgtataaaaaacaattttgctgCTTTCTCTAAAGAATTCGTCATTTCT
ATTACGTCAAATGaccaaattataaaaatcttataaaaactcaacccttt
atttgaaattaatttaCAAGACTTCTGTTTTCCTGGAGCGTGGCAGGCTG
TATCATTTGAGGCGTGCGATAGTacgcgcacacctccacacacacctgAA
ATGTCTTAGGAGTGCGATTTATTGCAAACCATAAAATTAGTTTTACAACT
CAAAGTTGAGCATAGCACTCCTAATCACACGtctaaattactaaaattaa
ggttttaggagtgtgattgaccacaccatggaattttcaaatgatgcagc
cAGTGGTTACTACGAATAATGAAAAAGCTAAGAGTTTTTTATACTTGAAA
CCCATAGGTCCcttctttgtttacattttgagaTCAAATAGACATCAtga
gaaaactaaaaaactaacgatacaaaacttttttttcttctttctagaAG
CTCGGAAAAAGGAAACCAAAACCGCAAAACGAACAAACTGAAGATTTCGA
TACGATCAAATGGggaataattttattttttaggacTAGTTATATTTCTA
AATTgtattcttgaacttttatg Coding sequence (CDS) from alignment at scaffold_167:1482924..1484646+ >TCONS_00049966 ID=TCONS_00049966|Name=TCONS_00049966|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_167:1482924..1484646+ (Clytia hemisphaerica)
GCTTCTTCAACCTCAACCAATCAAACTGCTGGACGATTATTGGGTCAATT
ATTGGGCAAATCACAGACCTTCACAGACCTTCAACAAAATGTCATTATGT
TGAAACAATCTACAAAACAACTGCAAAAAGAACTTCAACATCTAAAGGGT
GAAGTTGGATATCtgaaaaagcttcaaaaatattatttcccTTGCGTACC
AATCGAAGACAGTGATGTATATGATTGTACTGATGTTGTACCAATGAAGG
ACTGTCTTGCATTCTCACAAGCTGGCTTTCGAAAGAATGGTTTGTACAGA
ATACGCCCTGGACAAGCAAGGAACATTACCGTTTTTTGCGATCAAACCAG
TGAAGGAGGTGGTTTCACAACAATCATGCGTCGCCAAGATGGTTCTGTCA
ATTTTCAAAGACCCTGGAAAGATTACAAGTTcggatttggaaaactttta
acCGAATTTTGGTTCGGAAATGNATGGCTCTGTCAATTTCCAAAGACCCT
GGAAAGATTACAAGTTCGGATTTGGAAAGCTTTTAACTGGATTTTGGTTC
GGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049966-exon-scaffold_167-1491911889:1482924..1483924 | TCONS_00049966-exon-scaffold_167-1491911889:1482924..1483924 | Clytia hemisphaerica | exon |
| TCONS_00049966-exon-scaffold_167-1510915933:1482924..1483924 | TCONS_00049966-exon-scaffold_167-1510915933:1482924..1483924 | Clytia hemisphaerica | exon |
| TCONS_00049966-exon-scaffold_167-1575043694:1482924..1483924 | TCONS_00049966-exon-scaffold_167-1575043694:1482924..1483924 | Clytia hemisphaerica | exon |
| TCONS_00049966-exon-scaffold_167-1491911889:1484521..1484646 | TCONS_00049966-exon-scaffold_167-1491911889:1484521..1484646 | Clytia hemisphaerica | exon |
| TCONS_00049966-exon-scaffold_167-1510915933:1484521..1484646 | TCONS_00049966-exon-scaffold_167-1510915933:1484521..1484646 | Clytia hemisphaerica | exon |
| TCONS_00049966-exon-scaffold_167-1575043694:1484521..1484646 | TCONS_00049966-exon-scaffold_167-1575043694:1484521..1484646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1482924..1484646 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
BLAST of TCONS_00049966 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 8.477e-24 Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 460 FGSEMXGSVNFQRPWKDYKFGFGKLLTGFWFGNENMHDLTKPTFAPKSSTLLINMRMKGQTKPVYAKYDTFEIGDEASKYTLKISS-VSGNASHLTGFLGRHNNMKFSTYDQDNDNYFGHCSTYYGRVGWWFNDCYTTLLTGDY-KFTKGTSNGEISWYNGK 939
F + GSV+F R W YK GFG L FW GN+N+H LT A +S L +++ + + +AKY +F++ DEA KY L + + V G+A F HNN FST DQDND G+C+ + + WW+ +C+ + L G Y + T G+ I+W +GK
Sbjct: 145 FQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALT----AQGTSELRVDL-VDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTF---HNNQSFSTKDQDNDLNTGNCAVMF-QGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGK 297
The following BLAST results are available for this feature:
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