TCONS_00049487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049487
Unique NameTCONS_00049487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049487 ID=TCONS_00049487|Name=TCONS_00049487|organism=Clytia hemisphaerica|type=transcript|length=938bp
TCCAAATATACATAAATGGAAGTATAAAGCAAACATTTTGCATTGAAACC
AAGCTCAGCAATCAATCAATAGTTGATAAAGTTTTATAGTTTGTGATTGC
TAACTGTATAGTCCCTGGAGGATTTACTTTGAAATCCTACGCGTTAAGAG
TATATTTTGCATTGTTGTGGGATGGGCAATTTCANTTGAATCCTTCGCGT
TAGGAGAATATTTTGTATTGTTGTGGGATGGGCAATTTCTTCAATGACAT
TCCGATTATAAATTGGGCTCACTTTATCAAGGATAGAATCAGTTATCATT
TGAACTGTGTACAGACATAACAAATAATTTTGGAACCAACTTGATTTCTC
TCTCGACAAACTAATCTCAAGACAAGATGCCTGAAAACTGCACCAAATGC
GATGACCCAATCCGTGATACTACCGTGACATTCGAAAAGAAACCTTATCA
TCCAGAATGCTTCGTTTGTCATCAATGTCAAAAGAAGTTATCAGGCAAAG
CGATTTACAAACATGAAGGTCACAACTATGATCAAGAATGCTATGGAACG
TTTCACGCCAAGAGGTGCGCAAAATGTTACGAAGTTTTAACCGACCCTAA
AGTCTCTTACGTACAGTATGACGGGAAGACGTTTCACCCGGATTGTTTTA
CGTGCTCACGTTGTGATAAAAGTCTTGCGAAACAACAGTTCTATCTTGAC
GGCGAAAACAAACTATGCGAAAAATGCCATTAAGGCTGACCACATAATAG
GGTCTTGATGATTAAATGATGTTTTAATCATAACGTTGCCCTTAAAAGGC
CGTAGAATATTGTGCACATAAAAGATTTCTATAATTGCTAGCTATGAGGC
TATGACGCAGAATTTGCATCAGAAATctgtttggaaaaaaaactCTCAAG
TACTTTGTCATGGGAAAGTCTATAAAGTTcgtaaaaag
Run BLAST on NCBI

protein sequence of TCONS_00049487-protein

>TCONS_00049487-protein ID=TCONS_00049487-protein|Name=TCONS_00049487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MPENCTKCDDPIRDTTVTFEKKPYHPECFVCHQCQKKLSGKAIYKHEGHN
YDQECYGTFHAKRCAKCYEVLTDPKVSYVQYDGKTFHPDCFTCSRCDKSL
AKQQFYLDGENKLCEKCH
Run BLAST on NCBI

transcript from alignment at scaffold_16:5698..9804-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049487 ID=TCONS_00049487|Name=TCONS_00049487|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at scaffold_16:5698..9804- (Clytia hemisphaerica)
TCCAAATATACATAAATGGAAGTATAAAGCAAACATTTTGCATTGAAACC
AAGCTCAGCAATCAATCAATAGTTGATAAAGTTTTATAGTTTGTGATTGC
TAACTGTATAGTCCCTGGAGGATTTACTTTGAAATCCTACGCGTTAAGAG
TATATTTTGCATTGTTGTGGGATGGGCAATTTCANTTGAATCCTTCGCGT
TAGGAGAATATTTTGTATTGTTGTGGGATGGGCAATTTCTTCAATGACAT
TCCGATTATAAATTGGGCTCACTTTATCAAGGATAGAATCAGTTATCATT
TGAACTGTGTACAGACATAACAAATAATTTTGGAACCAACTTGATTTCTC
TCTCGACAAACTAATCTCAAGACAAGATGCCTGAAGTAAGGATATTTCAA
TTAATCTTAATTAAACTGTTTGTTGACCAGTGTCATTTGGGAGTTACATT
AGGGTACTGTTTCTTATTTACACGTTTTTTATCCAAATTTTTTTGAAGCT
TTCGGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAACA
TGTTCTTATTTTGACCATTTTGGGAAGACTTTTGACCATTTTTCTAAGAA
ATAGGGTGTTTTTGAGTTCACAAAGCCTTAAAATGTTCTTAACTTGTTCT
TAACATTTTTGCCAGCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATA
AAAAGAAAACGTGCATTTGTTTTTGTTTACATGTTGTTGGAGACGCAGAA
GATTTTAAATCAAGTTTGTGAAGAGTATGTTTTTGAAACCATGCGCCTTT
AAATTTTCGTATCGATGAGCTGACACCAGTGACTATTTTTTTTAGTATTC
CTTTTTGTGTCAATTCCGGGTTTAGATAGGAATGTATATATCACGGATGT
GGCGGTTGATTTTTTTGAAGGACTCCGTAGCGAGCCTGAACCTTTTCTTT
CCTGCTAAACTTACTTTATATCTAAAAATTACTTTTCAGACGAGTTCTAG
ATCTGGCTTGTTTATTTTGAAGGTATTTCTTATACAGCATAAGTCAACAA
AAAGTACATCGCTTGTAACGATATACAAACAAAAGCGGAAATAAAAAACT
CTTTCGTTTCGACAAGAAAACACTTTATAATGTGTTGTGTAAATGAGAAA
ACAATCCTTAAAAGGACAACAAATGGTGTAAATAGTTTATCAGAAAAACA
AATACCTCATAATTATGATTTCAAAACAAAGTGGATTAAATGAGGATTAG
GAATTAAGAAATTTTTTTAAAGAGATTTTATGTGATTTTAGCATTATGAC
ATCATCTCTAGACTGCCTCAGATTGCACATAACTGTCATGTTAAGTTTAT
TTTTATATAAGTGTATTTTTTATACTAACTTGCTAGCTCTGCAAATACTT
AGTATCCAAAATTACGAGAAATAGAATTCTATTCTTCCTCCCGAAAAAAT
GACAAAATGGATTTCGCGTAAATAAAGTTTTATTTACGTTTTGTTTTTAT
GTTAGAACTGCACCAAATGCGATGACCCAATCCGTGATACTACCGTGACA
TTCGAAAAGAAACCTTATCATCCAGAATGCTTCGTTTGTCATCAATGTCA
AAAGAAGTTATCAGGTATATATCATGTTTTTTTGCCTTAGTGAGTGTGTC
CAAGGATACTTAACAGTTTTTATATGAAACTATCCTAATCTCCTTCATTT
TACTAACACCTACACGTTTTTTATGAGAGCATTCAAAAAATTCTGAAACC
TTTTGATATTAATAACTTTTTGAGTCAGGTCTTAAAATGTTCTTAACGTC
TTGTTATTTTCTCCATTTTGTAAATATTTCTTTTCCCTTTTCTTAAGAAA
TCGGGTGGTTTAGTGTCCGTAAAGCTTTAAAATGTTCTTAACTTGTTCTT
AATATTTTGGCCATCAATGTTTTTAAAGTTTGTTCTTATAGAAAAACGTG
TAGTGATACCTTCAAGTTTTCCTTATTTCATACTTGTCAACTACAAAATA
AAATATTACAGACTGATGGGTTGTTCTTAAATTGTTCTGATTTTTTGGTA
TTTATTTGAGTCTCGTTGTTTTTGTAAAAAGTTGACAAAGAAGCATTACA
CATTGTCTTTTCTACATTAATCAGGGTTATCTGATAGGCAATAAGCAGTT
GAGATCTCTAAGCAATTACACTATGAGTTTTGGTTTCCTCAATTGTAAAT
TAATTTGAAATGAAAAAAACTAACTCGAGTGGCCGGGGCCCGGGGGTCTA
CTACGTAGGTTTGCAAAGTGACGGGTATGTCCGAGCCAAAAATCGAAAAT
CGACCCTAAGAGAGAAAAAATTGGCATTTTTGGGTCCCTTAGAGAGATCT
TCTCAAAATTTTTGTCGATTTTCACTCGATTTTTATCCAAATTTTAGAAA
AACACCACCCTTTGAGAGAGGGAACCGACCCTTACCGTCTGCACATACCC
AGCACTAATTTTTGCCTAAGTACCCCCCCGGGCTTGAGTGCCGTGTGCAT
TTTATCAAAAGTTGAATTAAATTTACTAACACCAAGAAATTTATAAATCC
TTTCCTAACACTTTTCATTATCTCACTTACAACGCGTTAAGTTTTATAAA
CATTAGGGTTAATATTCTAAAATTGTGGTATTTAGATATGTAAATCATAA
ATGTTAAGATAGGTATCAAAACCACTTTTTGAGCCTTGGGCTAAGAATAT
GAAATTGTGTTATTAAGATAACTCAAAAATGTTTAGGATCGTAGTTATCA
AAACCACTTTTTGAACCTTACATCATTTTACACCCCCTTACATTCAATCA
CTTTTTGCACTCCGCTCTTCTTCACTATGTGGTTTTCAAACTTGTTCCAA
CATAATTTCGTTACTCTTAGCAACCTAGCTTAGTTACCCAGCTATCTTAA
TCATTAGGCAAATAATCACAGATAAATGAGAAATAAAATTTCAATAAAAC
CGTGTTTAAACGTGGATTTTGCACACGGAACTATAACCTATAGCATAGAA
ATCACTTTTCTAAGAGTCACATTCCACGCGCAGTTTTATAACAGCTTCAC
TCAATGCAACTGTGATAATTAATTAAAAGTTCAAGAACTACATTTGAATT
CAAATCTACTCAAAACGTTGCGTTTTATTCTGTGAATAACCACAGCAATT
CAATTCGTCTAGACTGTTTCATAATAACTGTACTGCCCTCCCTCAACACA
GAAACTTTATCGCTCCGTAAAACAATTATTAAAGCTAAAATAGTCTGATA
GGCAAAATAAAGAGTATTCTAGGCGTCTTTTGTAAGACTGGCCTCGACTC
GATGTGCGCTGCACACCACTTGATCATTTTTTTACGCTGGTGCGTTATCA
TATTAACGGATATAATGGAGGAGGCGACCCAATTGGTTGAACATAAAGTC
AAAGTCATTTTTCAAAATTCCTTTTCGGACCTTTCGGCCTCGGAAAGCTG
GACTCAACGTGTAAAACCCTGAAACAGGTCTTTAATAACTCTATCTCCTT
GTTTGAAAAGATAACCAAAAAGCACTAACTCAATTTTAAAGCACTAACAC
TTTTTCACTAAAAATAATGCAAAAATAACCTGGCAGCAGATACTAATTTT
CCGCACTATACGCACAAAAACGCACGCACCAACACATACATGCATTCGCT
CCTTTCCCTTCAGGCAAAGCGATTTACAAACATGAAGGTCACAACTATGA
TCAAGAATGCTATGGAACGTTTCACGCCAAGAGGTGCGCAAAATGTTACG
AAGTTTTAACCGACCCTAAAGTCTCTTACGTACAGTATGACGGGAAGACG
TTTCACCCGGATTGTTTTACGTGCTCACGTTGTGATAAAAGTCTTGCGAA
ACAACAGTTCTATCTTGACGGCGAAAACAAACTATGCGAAAAATGCCATT
AAGGCTGACCACATAATAGGGTCTTGATGATTAAATGATGTTTTAATCAT
AACGTTGCCCTTAAAAGGCCGTAGAATATTGTGCACATAAAAGATTTCTA
TAATTGCTAGCTATGAGGCTATGACGCAGAATTTGCATCAGAAATCTGTT
TGGAAAAAAAACTCTCAAGTACTTTGTCATGGGAAAGTCTATAAAGTTCG
TAAAAAG

Coding sequence (CDS) from alignment at scaffold_16:5698..9804-

>TCONS_00049487 ID=TCONS_00049487|Name=TCONS_00049487|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_16:5698..9804- (Clytia hemisphaerica)
GCAAAGCGATTTACAAACATGAAGGTCACAACTATGATCAAGAATGCTAT
GGAACGTTTCACGCCAAGAGGTGCGCAAAATGTTACGAAGTTTTAACCGA
CCCTAAAGTCTCTTACGTACAGTATGACGGGAAGACGTTTCACCCGGATT
GTTTTACGTGCTCACGTTGTGATAAAAGTCTTGCGAAACAACAGTTCTAT
CTTGACGGCGAAAACAAACTATGCGAAAAATGCCATTAAAACTGCACCAA
ATGCGATGACCCAATCCGTGATACTACCGTGACATTCGAAAAGAAACCTT
ATCATCCAGAATGCTTCGTTTGTCATCAATGTCAAAAGAAGTTATCAGAT
GCCTGAAGCAAAGCGATTTACAAACATGAAGGTCACAACTATGATCAAGA
ATGCTATGGAACGTTTCACGCCAAGAGGTGCGCAAAATGTTACGAAGTTT
TAACCGACCCTAAAGTCTCTTACGTACAGTATGACGGGAAGACGTTTCAC
CCGGATTGTTTTACGTGCTCACGTTGTGATAAAAGTCTTGCGAAACAACA
GTTCTATCTTGACGGCGAAAACAAACTATGCGAAAAATGCCATTAAAACT
GCACCAAATGCGATGACCCAATCCGTGATACTACCGTGACATTCGAAAAG
AAACCTTATCATCCAGAATGCTTCGTTTGTCATCAATGTCAAAAGAAGTT
ATCAGATGCCTGAAGCAAAGCGATTTACAAACATGAAGGTCACAACTATG
ATCAAGAATGCTATGGAACGTTTCACGCCAAGAGGTGCGCAAAATGTTAC
GAAGTTTTAACCGACCCTAAAGTCTCTTACGTACAGTATGACGGGAAGAC
GTTTCACCCGGATTGTTTTACGTGCTCACGTTGTGATAAAAGTCTTGCGA
AACAACAGTTCTATCTTGACGGCGAAAACAAACTATGCGAAAAATGCCAT
TAAAACTGCACCAAATGCGATGACCCAATCCGTGATACTACCGTGACATT
CGAAAAGAAACCTTATCATCCAGAATGCTTCGTTTGTCATCAATGTCAAA
AGAAGTTATCAGATGCCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031396XLOC_031396Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049487-proteinTCONS_00049487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049487-exon-scaffold_16-1575043694:9420..9804TCONS_00049487-exon-scaffold_16-1575043694:9420..9804Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1575043694:8191..8299TCONS_00049487-exon-scaffold_16-1575043694:8191..8299Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1575043694:5698..6141TCONS_00049487-exon-scaffold_16-1575043694:5698..6141Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1510915933:9420..9804TCONS_00049487-exon-scaffold_16-1510915933:9420..9804Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1510915933:8191..8299TCONS_00049487-exon-scaffold_16-1510915933:8191..8299Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1510915933:5698..6141TCONS_00049487-exon-scaffold_16-1510915933:5698..6141Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1491911889:9420..9804TCONS_00049487-exon-scaffold_16-1491911889:9420..9804Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1491911889:8191..8299TCONS_00049487-exon-scaffold_16-1491911889:8191..8299Clytia hemisphaericaexon
TCONS_00049487-exon-scaffold_16-1491911889:5698..6141TCONS_00049487-exon-scaffold_16-1491911889:5698..6141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:5698..9804 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.247408	0.0839733	0	2.83945	3.10105	5.09512	6.07975	2.40543	3.42757	141.078	114.613	111.105	99.777	53.9585	62.457	197.804	227.147	72.3279	70.3511	30.3704	38.9939	25.3337	30.4898	100.447	93.9936	61.0103	96.3467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Blast
[Close]
BLAST of TCONS_00049487 vs. Swiss-Prot (Human)
Match: FHL3 (Four and a half LIM domains protein 3 OS=Homo sapiens GN=FHL3 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 1.751e-17
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = 2 
Query:  368 QDKMPENCTKCDDPIRDTTVTFEKKPYHPECFVCHQCQKKLSGKAIYKHEGHNYDQECYGTFHAKRCAKCYE-VLTDPKVSYVQYDGKTFHPDCFTCSRCDKSLAKQQFYLDGENKLCEKC 727
            ++K    C +C   +    VT+  +P+H EC VC  CQ  L+G+     +   Y   C+G   A +C+ C   ++      YV ++ + +H +CF+C+RC  SL  Q F  DG+  LC+ C
Sbjct:  155 ENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFEDRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 275
The following BLAST results are available for this feature:
BLAST of TCONS_00049487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FHL31.751e-1731.40Four and a half LIM domains protein 3 OS=Homo sapi... [more]
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