TCONS_00049487-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049487-protein
Unique NameTCONS_00049487-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length118

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049487-protein ID=TCONS_00049487-protein|Name=TCONS_00049487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MPENCTKCDDPIRDTTVTFEKKPYHPECFVCHQCQKKLSGKAIYKHEGHN
YDQECYGTFHAKRCAKCYEVLTDPKVSYVQYDGKTFHPDCFTCSRCDKSL
AKQQFYLDGENKLCEKCH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031396XLOC_031396Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049487TCONS_00049487Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 4..55
e-value: 4.1E-12
score: 56.3
coord: 63..117
e-value: 6.2E-15
score: 65.6
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 5..57
e-value: 1.3E-11
score: 44.4
coord: 64..118
e-value: 3.4E-10
score: 39.9
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 5..38
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 64..100
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 62..118
score: 12.296
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 3..61
score: 9.385
NoneNo IPR availableGENE3D2.10.110.10coord: 3..67
e-value: 5.9E-15
score: 54.9
NoneNo IPR availableGENE3D2.10.110.10coord: 68..118
e-value: 2.6E-14
score: 52.4
NoneNo IPR availableCDDcd08368LIMcoord: 64..118
e-value: 1.12834E-7
score: 43.4603
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 31..97
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..29

Blast
[Close]
BLAST of TCONS_00049487-protein vs. Swiss-Prot (Human)
Match: FHL2 (Four and a half LIM domains protein 2 OS=Homo sapiens GN=FHL2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 3.932e-19
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 0 
Query:    5 CTKCDDPIRDTTVTFEKKPYHPECFVCHQCQKKLSGKAIYKHEGHNYDQECYGTFHAKRCAKCYEVLTD-PKVSYVQYDGKTFHPDCFTCSRCDKSLAKQQFYLDGENKLCEKC 117
            C +C  PI    VT+ ++P+H ECFVC  C+K+LSG+     +   Y   C+   +AK+CA C   ++      Y+ ++ + +H DCF C +C  SL  + F  + ++ LC  C
Sbjct:  162 CVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 275
The following BLAST results are available for this feature:
BLAST of TCONS_00049487-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FHL23.932e-1933.33Four and a half LIM domains protein 2 OS=Homo sapi... [more]
back to top