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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010641 ID=TCONS_00010641|Name=TCONS_00010641|organism=Clytia hemisphaerica|type=transcript|length=901bp GCGTGGCAAAATTTGACgagacttttgaattttttaaagagtATAAAAAA CCTTCAATATGGAGTTTATTCAAACGACACACAGcagaatcaatcaatca tcgaaaaaagaaggaagaaaaaaaaagaattttgttcACTCGAAAGAAAC TGATAAAGAAACATAACATTACATTTCAAAGATTTGTACTGACTTTAAAA CAAGATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAG AGATTCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATT TTATACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGG TTTTAACGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGG ATGTTGGTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCC AATACACAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAAT AGGAGAAGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAA GGGATGCTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCA CTGAGTGCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAA TCGGAGTTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCT ATGAAGGACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatG TAATATTCGTATGCTATCAAGGAAATGTTAGTTAACTGGGACACCATTCA TCAAATCTAAGACAGCAACACCAACAAGCAGTGAAAGACTCAATGTTGAA CACATTCAAGTCTTGGATTGAAAGAACGAATTCGGTTATATTATTTTTGG G Run BLAST on NCBI protein sequence of TCONS_00010641-protein >TCONS_00010641-protein ID=TCONS_00010641-protein|Name=TCONS_00010641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MGIMHSIFKQFIGKKEIRILMVGLDAAGKTTILYKLKLGEVVLSIPTIGF NVETVEYKNINFTVWDVGGQHKIRPLWRHYFSNTQGIIFVVDSNDRERIG EAKEELDNMLNDHDLRDASLLVFANKQDLPNALSASQITEKLGLLDIRNR SWYTQATCAGNGNGLYEGLDWLAEDLKKKKVM Run BLAST on NCBI transcript from alignment at sc0000108:547832..551327+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010641 ID=TCONS_00010641|Name=TCONS_00010641|organism=Clytia hemisphaerica|type=transcript|length=3496bp|location=Sequence derived from alignment at sc0000108:547832..551327+ (Clytia hemisphaerica) GCGTGGCAAAATTTGACgagacttttgaattttttaaagagtATAAAAAA
CCTTCAATATGGAGTTTATTCAAACGACACACAGcagaatcaatcaatca
tcgaaaaaagaaggaagaaaaaaaaagaattttgttcACTCGAAAGAAAC
TGATAAAGAAACATAACATTACATTTCAAAGATTTGTACTGACTTTAAAA
CAAGATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAG
AGATTCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATT
TTATACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGG
TATGtgtgattttcttctttttataagaacaaaaagctTTCATGACCAAA
GCATGAGTTAcagacattttaaagctttaaaaaatctaaaacactCAAAT
TCTTAGGAAATCTaacaagaaatttaaatttgtaGAGCCACAGGAAGCAA
TGAAAACCATTTCACATCTAAAACCTACActtgattacaaaaatatttgg
tTGTCTCATATATCTTATTTACACAATGGTAAATTataataatatcaaaa
catgaTCACATGATACCAAGAAGTATAattcatttttgtttgttttaaaa
gtTCTAACGTAATTCAAAACAACATATCCAAAACCTACActtgattacaa
aaatatttggtTGTCTCGTATATCTTATTTACACAATGGTAAATTataat
aatatcaaaacatCATCACATGATACCAAGAAGTATAattcatttttgtt
tgttttaaaagtTCTAACGTGATTCAAAACAACAGAGTGATTAAACAGGG
TAGATTCTCAATTTTATATTTCTATCTAAAGGTTTTAACGTGGAGACAGT
AGAATACAAGAATATCAATTTCACCGTATGGGATGTTGGTGGTCAACATA
AGATTCGACCATTATGGAGACACTACTTCTCCAATACACAAGGTAAGTTG
TTTCAAACCTGCATGAAGTACTTAGCACCTTGACGCTTACGAATCAGTGT
GAGACAGAACAAAGGTTATCATGGTCAGAGGCCAAGCGTTAAACGCTCAA
AATGAAATTGCATGGATTAAGAATAACAAGCCCCTCCCATCCTGACAATT
TTAAAGGCGTACTTTTGTCTACTCCTGTTAATGTTGTTAATAAGTTGATT
TCAGATTCTGTCCAAGACTTATTTGGCCTCAAAAAGTCTGTTCAACATTC
ACGAAATCAAGTTAAAtgcttttttatgaaaatgtactctataagaatat
tcaagACGAAGCAATTATTTACAAAATACTATAATAATGTAATAATCATA
AATTTGGCAACCTAAGAATGCCACTTCCAGGgcattttagagcatttttg
cCTGTAAATAAATATCCACGGTGAAATGGATATACACCTATATCCAAAtt
agaaagaaaaatcaatgaTGCGTACCTTTTCTTTCTCACACACACAGGCA
TCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGAAGCCAAA
GAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATGCTTCACT
TCTTGTCTTTGCTAATAAACAGgtaaaaaacaaatagaaagtTGATAAAT
AGATTCAAGTACTAGTAAAGGTATTTTTAGGCCCTCCATCAAACGACCAT
ACCTCAACCCACTAAATTTCCAGCCAAAATGACCTATTGTGACGGTTGAG
TGCAACACTTGCACACACCTTTTTTGACGTGTTTTATATCTTGTTATTAC
GAAATTTATGACCCTGTGATGCAAGGGAGTCGATTTTTGTGACCCTGCCA
GAAACTCAATTGCTGTTTTATGGTTTCACTGTGAGAGACGAGGGTGTAAA
AGGACCCTTATGGTCCCCTTATGGCTCGCCTAAGTGCTCCCCCCGGAGGT
GCAACAGCTTTCAACACCAACAAACCTTTGGCTAAAGaaatacttaaaaa
aattaCCATTTTTTATAGGACTTACCAAACGCACTGAGTGCATCACAGAT
CACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAGTTGGTATACAC
AAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAGGACTTGATTGG
CTGGctgaagatttgaagaaaaagaaagtcatGTAATATTCGTATGCATA
CAAACAATGAGATATATTGTATATAGTTTAAAATCTGAAACACTAAAATC
ATTAATCACTAGCACCTGTAAATATAGCTTTCCTTAAATATTTATATAAA
ACTtgtaattcaaaaaaaatatatttcattaaaTTAGGCTTTTAAAATGG
CAagatattttttaaagtattcagAAAACAGCATTTTACGTAGTCCAGGA
TAATTGGATTTCGGCATTAAAGTTGATGCTGTAAACTCTTTTTATAATAA
CAGTTATACACTTAAGACCAGCGTCAAGCATGGAAAGAATAAGTTTAGGC
AAATCAAAGTTCAAGGAACCAAAAATAGGACGTCAAGTTTTAAAATGagt
taggcgagaccaatttaatttgttttcttacgggccaagctatccaaaaa
agagggtcggtcggtcggcggaaaaataaaaagtagaatttcaccaataa
aatctcctaaaaaggcagcaaaaactacgaCATCAaggatgaaatcaaaa
attgaacataaaattctcaaacctTGGAAAAACGACCGAAAATATGACAg
cctgtaaagcaatgaaaataaaaagtgtactaccaccaaaatcaatttta
tttttgttttgatttttggaatttcagggtcggtcgggcccgtaaaacaa
ctaattaaATTAGTCTCGCCTTACTCTTTTAAACAGGATAAAATCATTGA
GGTTCAAAGTGCCACAAAATTAACAACAGTCTAGGCTTATCTGACAGAAA
TTCacctgttcttataaaaaaagtttttaatttaaCTACATCAGACAGTT
TTAGCCTTTACAAAGAGTAACGAGAGAGATTAATACGAGAGATCTTATTA
GTGAGATTAAGTAAATCGgtataatcacgacgacgaacgaaaatttaaca
ggctagtgagtttcaaccaatcaaatttcgtattttaactagcctattac
atttttcgtccgtgattatcctggtatgctaaACCTCAGTATTATGAAAA
TGTCAATACAGTCAGTCTTCAAACCTATTTATCCAAGATCCTGAGTAATT
ATAATTATACCATTCTCATTATAGATTGACAActcaataaaaatcaaaaa
gcaaaatacataaaaaaacattaaagcTACATGCAGTTCTACTATTCTAC
TATTAAGGCTATCAAGGAAATGTTAGTTAACTGGGACACCATTCATCAAA
TCTAAGACAGCAACACCAACAAGCAGTGAAAGACTCAATGTTGAACACAT
TCAAGTCTTGGATTGAAAGAACGAATTCGGTTATATTATTTTTGGG Coding sequence (CDS) from alignment at sc0000108:547832..551327+ >TCONS_00010641 ID=TCONS_00010641|Name=TCONS_00010641|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000108:547832..551327+ (Clytia hemisphaerica) ATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGAT TCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTAT ACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTT AACGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGT TGGTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATA CACAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGA GAAGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGA TGCTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGA GTGCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGG AGTTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGA AGGACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAAA TGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGATT CGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTATA CAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTTA ACGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGTT GGTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATAC ACAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAG AAGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGAT GCTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGAG TGCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGA GTTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAA GGACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAAAT GGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGATTC GCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTATAC AAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTTAA CGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGTTG GTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATACA CAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGA AGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATG CTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGAGT GCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAG TTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAG GACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAAATG GGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGATTCG CATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTATACA AATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTTAAC GTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGTTGG TGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATACAC AAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGAA GCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATGC TTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGAGTG CATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAGT TGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAGG ACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010641-exon-sc0000108-1491911889:547832..548180 | TCONS_00010641-exon-sc0000108-1491911889:547832..548180 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1510915933:547832..548180 | TCONS_00010641-exon-sc0000108-1510915933:547832..548180 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1575043694:547832..548180 | TCONS_00010641-exon-sc0000108-1575043694:547832..548180 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1491911889:548713..548823 | TCONS_00010641-exon-sc0000108-1491911889:548713..548823 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1510915933:548713..548823 | TCONS_00010641-exon-sc0000108-1510915933:548713..548823 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1575043694:548713..548823 | TCONS_00010641-exon-sc0000108-1575043694:548713..548823 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1491911889:549329..549453 | TCONS_00010641-exon-sc0000108-1491911889:549329..549453 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1510915933:549329..549453 | TCONS_00010641-exon-sc0000108-1510915933:549329..549453 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1575043694:549329..549453 | TCONS_00010641-exon-sc0000108-1575043694:549329..549453 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1491911889:549850..550026 | TCONS_00010641-exon-sc0000108-1491911889:549850..550026 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1510915933:549850..550026 | TCONS_00010641-exon-sc0000108-1510915933:549850..550026 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1575043694:549850..550026 | TCONS_00010641-exon-sc0000108-1575043694:549850..550026 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1491911889:551189..551327 | TCONS_00010641-exon-sc0000108-1491911889:551189..551327 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1510915933:551189..551327 | TCONS_00010641-exon-sc0000108-1510915933:551189..551327 | Clytia hemisphaerica | exon |
TCONS_00010641-exon-sc0000108-1575043694:551189..551327 | TCONS_00010641-exon-sc0000108-1575043694:551189..551327 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000108 | supercontig | sc0000108:547832..551327 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
Vocabulary: Biological Process
Term | Definition |
GO:0007264 | small GTPase mediated signal transduction |
Vocabulary: Cellular Component
Term | Definition |
GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007264 |
small GTPase mediated signal transduction |
cellular_component |
GO:0005622 |
intracellular |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00010641 vs. Swiss-Prot (Human)
Match: ARF3 (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2) HSP 1 Score: 286.96 bits (733), Expect = 1.042e-96 Identity = 136/178 (76.40%), Postives = 157/178 (88.20%), Query Frame = 1
Query: 211 IMHSIFKQFIGKKEIRILMVGLDAAGKTTILYKLKLGEVVLSIPTIGFNVETVEYKNINFTVWDVGGQHKIRPLWRHYFSNTQGIIFVVDSNDRERIGEAKEELDNMLNDHDLRDASLLVFANKQDLPNALSASQITEKLGLLDIRNRSWYTQATCAGNGNGLYEGLDWLAEDLKKKK 744
I ++ K IGKKE+RILMVGLDAAGKTTILYKLKLGE+V +IPTIGFNVETVEYKNI+FTVWDVGGQ KIRPLWRHYF NTQG+IFVVDSNDRER+ EA+EEL ML + +LRDA LLVFANKQDLPNA++A++IT+KLGL +R+R+WY QATCA +G+GLYEGLDWLA LK KK
Sbjct: 4 IFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
The following BLAST results are available for this feature:
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