TCONS_00010641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010641
Unique NameTCONS_00010641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010641 ID=TCONS_00010641|Name=TCONS_00010641|organism=Clytia hemisphaerica|type=transcript|length=901bp
GCGTGGCAAAATTTGACgagacttttgaattttttaaagagtATAAAAAA
CCTTCAATATGGAGTTTATTCAAACGACACACAGcagaatcaatcaatca
tcgaaaaaagaaggaagaaaaaaaaagaattttgttcACTCGAAAGAAAC
TGATAAAGAAACATAACATTACATTTCAAAGATTTGTACTGACTTTAAAA
CAAGATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAG
AGATTCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATT
TTATACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGG
TTTTAACGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGG
ATGTTGGTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCC
AATACACAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAAT
AGGAGAAGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAA
GGGATGCTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCA
CTGAGTGCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAA
TCGGAGTTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCT
ATGAAGGACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatG
TAATATTCGTATGCTATCAAGGAAATGTTAGTTAACTGGGACACCATTCA
TCAAATCTAAGACAGCAACACCAACAAGCAGTGAAAGACTCAATGTTGAA
CACATTCAAGTCTTGGATTGAAAGAACGAATTCGGTTATATTATTTTTGG
G
Run BLAST on NCBI

protein sequence of TCONS_00010641-protein

>TCONS_00010641-protein ID=TCONS_00010641-protein|Name=TCONS_00010641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MGIMHSIFKQFIGKKEIRILMVGLDAAGKTTILYKLKLGEVVLSIPTIGF
NVETVEYKNINFTVWDVGGQHKIRPLWRHYFSNTQGIIFVVDSNDRERIG
EAKEELDNMLNDHDLRDASLLVFANKQDLPNALSASQITEKLGLLDIRNR
SWYTQATCAGNGNGLYEGLDWLAEDLKKKKVM
Run BLAST on NCBI

transcript from alignment at sc0000108:547832..551327+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010641 ID=TCONS_00010641|Name=TCONS_00010641|organism=Clytia hemisphaerica|type=transcript|length=3496bp|location=Sequence derived from alignment at sc0000108:547832..551327+ (Clytia hemisphaerica)
GCGTGGCAAAATTTGACgagacttttgaattttttaaagagtATAAAAAA
CCTTCAATATGGAGTTTATTCAAACGACACACAGcagaatcaatcaatca
tcgaaaaaagaaggaagaaaaaaaaagaattttgttcACTCGAAAGAAAC
TGATAAAGAAACATAACATTACATTTCAAAGATTTGTACTGACTTTAAAA
CAAGATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAG
AGATTCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATT
TTATACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGG
TATGtgtgattttcttctttttataagaacaaaaagctTTCATGACCAAA
GCATGAGTTAcagacattttaaagctttaaaaaatctaaaacactCAAAT
TCTTAGGAAATCTaacaagaaatttaaatttgtaGAGCCACAGGAAGCAA
TGAAAACCATTTCACATCTAAAACCTACActtgattacaaaaatatttgg
tTGTCTCATATATCTTATTTACACAATGGTAAATTataataatatcaaaa
catgaTCACATGATACCAAGAAGTATAattcatttttgtttgttttaaaa
gtTCTAACGTAATTCAAAACAACATATCCAAAACCTACActtgattacaa
aaatatttggtTGTCTCGTATATCTTATTTACACAATGGTAAATTataat
aatatcaaaacatCATCACATGATACCAAGAAGTATAattcatttttgtt
tgttttaaaagtTCTAACGTGATTCAAAACAACAGAGTGATTAAACAGGG
TAGATTCTCAATTTTATATTTCTATCTAAAGGTTTTAACGTGGAGACAGT
AGAATACAAGAATATCAATTTCACCGTATGGGATGTTGGTGGTCAACATA
AGATTCGACCATTATGGAGACACTACTTCTCCAATACACAAGGTAAGTTG
TTTCAAACCTGCATGAAGTACTTAGCACCTTGACGCTTACGAATCAGTGT
GAGACAGAACAAAGGTTATCATGGTCAGAGGCCAAGCGTTAAACGCTCAA
AATGAAATTGCATGGATTAAGAATAACAAGCCCCTCCCATCCTGACAATT
TTAAAGGCGTACTTTTGTCTACTCCTGTTAATGTTGTTAATAAGTTGATT
TCAGATTCTGTCCAAGACTTATTTGGCCTCAAAAAGTCTGTTCAACATTC
ACGAAATCAAGTTAAAtgcttttttatgaaaatgtactctataagaatat
tcaagACGAAGCAATTATTTACAAAATACTATAATAATGTAATAATCATA
AATTTGGCAACCTAAGAATGCCACTTCCAGGgcattttagagcatttttg
cCTGTAAATAAATATCCACGGTGAAATGGATATACACCTATATCCAAAtt
agaaagaaaaatcaatgaTGCGTACCTTTTCTTTCTCACACACACAGGCA
TCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGAAGCCAAA
GAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATGCTTCACT
TCTTGTCTTTGCTAATAAACAGgtaaaaaacaaatagaaagtTGATAAAT
AGATTCAAGTACTAGTAAAGGTATTTTTAGGCCCTCCATCAAACGACCAT
ACCTCAACCCACTAAATTTCCAGCCAAAATGACCTATTGTGACGGTTGAG
TGCAACACTTGCACACACCTTTTTTGACGTGTTTTATATCTTGTTATTAC
GAAATTTATGACCCTGTGATGCAAGGGAGTCGATTTTTGTGACCCTGCCA
GAAACTCAATTGCTGTTTTATGGTTTCACTGTGAGAGACGAGGGTGTAAA
AGGACCCTTATGGTCCCCTTATGGCTCGCCTAAGTGCTCCCCCCGGAGGT
GCAACAGCTTTCAACACCAACAAACCTTTGGCTAAAGaaatacttaaaaa
aattaCCATTTTTTATAGGACTTACCAAACGCACTGAGTGCATCACAGAT
CACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAGTTGGTATACAC
AAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAGGACTTGATTGG
CTGGctgaagatttgaagaaaaagaaagtcatGTAATATTCGTATGCATA
CAAACAATGAGATATATTGTATATAGTTTAAAATCTGAAACACTAAAATC
ATTAATCACTAGCACCTGTAAATATAGCTTTCCTTAAATATTTATATAAA
ACTtgtaattcaaaaaaaatatatttcattaaaTTAGGCTTTTAAAATGG
CAagatattttttaaagtattcagAAAACAGCATTTTACGTAGTCCAGGA
TAATTGGATTTCGGCATTAAAGTTGATGCTGTAAACTCTTTTTATAATAA
CAGTTATACACTTAAGACCAGCGTCAAGCATGGAAAGAATAAGTTTAGGC
AAATCAAAGTTCAAGGAACCAAAAATAGGACGTCAAGTTTTAAAATGagt
taggcgagaccaatttaatttgttttcttacgggccaagctatccaaaaa
agagggtcggtcggtcggcggaaaaataaaaagtagaatttcaccaataa
aatctcctaaaaaggcagcaaaaactacgaCATCAaggatgaaatcaaaa
attgaacataaaattctcaaacctTGGAAAAACGACCGAAAATATGACAg
cctgtaaagcaatgaaaataaaaagtgtactaccaccaaaatcaatttta
tttttgttttgatttttggaatttcagggtcggtcgggcccgtaaaacaa
ctaattaaATTAGTCTCGCCTTACTCTTTTAAACAGGATAAAATCATTGA
GGTTCAAAGTGCCACAAAATTAACAACAGTCTAGGCTTATCTGACAGAAA
TTCacctgttcttataaaaaaagtttttaatttaaCTACATCAGACAGTT
TTAGCCTTTACAAAGAGTAACGAGAGAGATTAATACGAGAGATCTTATTA
GTGAGATTAAGTAAATCGgtataatcacgacgacgaacgaaaatttaaca
ggctagtgagtttcaaccaatcaaatttcgtattttaactagcctattac
atttttcgtccgtgattatcctggtatgctaaACCTCAGTATTATGAAAA
TGTCAATACAGTCAGTCTTCAAACCTATTTATCCAAGATCCTGAGTAATT
ATAATTATACCATTCTCATTATAGATTGACAActcaataaaaatcaaaaa
gcaaaatacataaaaaaacattaaagcTACATGCAGTTCTACTATTCTAC
TATTAAGGCTATCAAGGAAATGTTAGTTAACTGGGACACCATTCATCAAA
TCTAAGACAGCAACACCAACAAGCAGTGAAAGACTCAATGTTGAACACAT
TCAAGTCTTGGATTGAAAGAACGAATTCGGTTATATTATTTTTGGG

Coding sequence (CDS) from alignment at sc0000108:547832..551327+

>TCONS_00010641 ID=TCONS_00010641|Name=TCONS_00010641|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000108:547832..551327+ (Clytia hemisphaerica)
ATGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGAT
TCGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTAT
ACAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTT
AACGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGT
TGGTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATA
CACAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGA
GAAGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGA
TGCTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGA
GTGCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGG
AGTTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGA
AGGACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAAA
TGGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGATT
CGCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTATA
CAAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTTA
ACGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGTT
GGTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATAC
ACAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAG
AAGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGAT
GCTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGAG
TGCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGA
GTTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAA
GGACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAAAT
GGGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGATTC
GCATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTATAC
AAATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTTAA
CGTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGTTG
GTGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATACA
CAAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGA
AGCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATG
CTTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGAGT
GCATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAG
TTGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAG
GACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAAATG
GGTATCATGCATTCAATCTTCAAGCAATTTATTGGGAAGAAAGAGATTCG
CATTTTGATGGTCGGCCTAGATGCTGCTGGCAAGACGACTATTTTATACA
AATTGAAATTGGGAGAGGTTGTGCTTTCAATTCCAACCATAGGTTTTAAC
GTGGAGACAGTAGAATACAAGAATATCAATTTCACCGTATGGGATGTTGG
TGGTCAACATAAGATTCGACCATTATGGAGACACTACTTCTCCAATACAC
AAGGCATCATTTTCGTAGTGGATTCAAACGATCGTGAACGAATAGGAGAA
GCCAAAGAGGAGCTGGATAACATGTTGAATGATCATGACTTAAGGGATGC
TTCACTTCTTGTCTTTGCTAATAAACAGGACTTACCAAACGCACTGAGTG
CATCACAGATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGGAGT
TGGTATACACAAGCTACTTGTGCAGGAAATGGTAATGGTCTCTATGAAGG
ACTTGATTGGCTGGctgaagatttgaagaaaaagaaagtcatGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005960XLOC_005960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010641-exon-sc0000108-1491911889:547832..548180TCONS_00010641-exon-sc0000108-1491911889:547832..548180Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1510915933:547832..548180TCONS_00010641-exon-sc0000108-1510915933:547832..548180Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1575043694:547832..548180TCONS_00010641-exon-sc0000108-1575043694:547832..548180Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1491911889:548713..548823TCONS_00010641-exon-sc0000108-1491911889:548713..548823Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1510915933:548713..548823TCONS_00010641-exon-sc0000108-1510915933:548713..548823Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1575043694:548713..548823TCONS_00010641-exon-sc0000108-1575043694:548713..548823Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1491911889:549329..549453TCONS_00010641-exon-sc0000108-1491911889:549329..549453Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1510915933:549329..549453TCONS_00010641-exon-sc0000108-1510915933:549329..549453Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1575043694:549329..549453TCONS_00010641-exon-sc0000108-1575043694:549329..549453Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1491911889:549850..550026TCONS_00010641-exon-sc0000108-1491911889:549850..550026Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1510915933:549850..550026TCONS_00010641-exon-sc0000108-1510915933:549850..550026Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1575043694:549850..550026TCONS_00010641-exon-sc0000108-1575043694:549850..550026Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1491911889:551189..551327TCONS_00010641-exon-sc0000108-1491911889:551189..551327Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1510915933:551189..551327TCONS_00010641-exon-sc0000108-1510915933:551189..551327Clytia hemisphaericaexon
TCONS_00010641-exon-sc0000108-1575043694:551189..551327TCONS_00010641-exon-sc0000108-1575043694:551189..551327Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010641-proteinTCONS_00010641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:547832..551327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.615221	0.449953	0.615042	0.511125	8.43003	5.57267	4.12682	4.12721	5.08033	8.05195	15.4267	2.74059	9.24982	6.55512	7.30246	3.49905	1.65494	1.34164	12.8316	13.9103	2.82545	2.48211	1.85656	2.15982	3.90817	7.90929	4.92094	2.70091	14.2312	8.37217
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00010641 vs. Swiss-Prot (Human)
Match: ARF3 (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 1.042e-96
Identity = 136/178 (76.40%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:  211 IMHSIFKQFIGKKEIRILMVGLDAAGKTTILYKLKLGEVVLSIPTIGFNVETVEYKNINFTVWDVGGQHKIRPLWRHYFSNTQGIIFVVDSNDRERIGEAKEELDNMLNDHDLRDASLLVFANKQDLPNALSASQITEKLGLLDIRNRSWYTQATCAGNGNGLYEGLDWLAEDLKKKK 744
            I  ++ K  IGKKE+RILMVGLDAAGKTTILYKLKLGE+V +IPTIGFNVETVEYKNI+FTVWDVGGQ KIRPLWRHYF NTQG+IFVVDSNDRER+ EA+EEL  ML + +LRDA LLVFANKQDLPNA++A++IT+KLGL  +R+R+WY QATCA +G+GLYEGLDWLA  LK KK
Sbjct:    4 IFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00010641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF31.042e-9676.40ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
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