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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009153 ID=TCONS_00009153|Name=TCONS_00009153|organism=Clytia hemisphaerica|type=transcript|length=1210bp AAAGTAAAtcacattttatttatttttgttacagCGTATCATAGTGTGAA GTTGTTTTATGTCTTATCTTCTAATTCTacatattatattttgattatta atgattttggattttttggttttaattttttttcagaatttatagGTCGG ACGAGAATGCGGTGATTTTAGCATTTTCGTTTCATTTATTTGGGAGTTTC TTACACAGGGAGTATATCTATAGATGTCTGTAAAATGAAGAGTAAAACGG CTTGAGAAAAGAAGACACATTATTGTGTCATATTTAACTATAAACTAGCT GTAccgaatctttttttctttgaaaaacgcGTACTAAACagtaatatttt tccaaaaataaaaacacattcGTTATTTCAGGATaaagtatttaaaaaga aacaaaatgtgGAAGATCGTAGCTGTGTTTTGCTTGTACGTCCAAATGAC GTACGGCGCCGTCAATGAACTGACGGATAATGATTTCTACAGTTACGCAG CAAAGAAGCAAGTTTTATTGGTCAACTTTTATGCACCATGGTGCAGTGAC TGTGCAAATTTGAATCCACATTTTGAAGGCGCAGCGACCACCCTTGGACC ACGCGGTGCTGACTTGGCTAAAgTAGATTGCTTCGGAGCTggtaaaggga tgtgtgaaatgTATTCCGTTAAAAGTTGGCCACAACTGAAATCTTTTCAC TTTGGAACGTACAATGGTGACTATACCGGGCCACAAACCACAGATGGGAT TGCAAACTATATTAACACTGTTGAAAACAGCGCTGCACCGCAAGTAGCAC CAGAGCAGCCTGCGGGTAACCCATACGCCGGACACTTACCAGGTGCCGCA CAACCGGCAGCCGGATTCAACAAACAACCTGTTGCAACATCCCTCTCATG TGCGAAATGCAAAATCGAAAAACCAAAAGGAAAAATTAaTAAAGGATGTA CGTCAGCTTTGAAGAAACAGTGTATCACAAGCAGTAAGGATAAAAAATCT TTATCCAAAGCACAAATGCAATATGGTGAAGATGACAAATAAACATGCAT GCATGCGCATGGCTTTTTCTTATCACGTGATCAACAGTTAACCAATTTGA CCAATTATCTTTGTATTATTTTTTGATCTTATCAAAATCTTGTATATTTT CCTATCATTACatgataaatatattttttcatacCAGAAATTGTCTTGAT TATTACTACA Run BLAST on NCBI protein sequence of TCONS_00009153-protein >TCONS_00009153-protein ID=TCONS_00009153-protein|Name=TCONS_00009153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MWKIVAVFCLYVQMTYGAVNELTDNDFYSYAAKKQVLLVNFYAPWCSDCA NLNPHFEGAATTLGPRGADLAKVDCFGAGKGMCEMYSVKSWPQLKSFHFG TYNGDYTGPQTTDGIANYINTVENSAAPQVAPEQPAGNPYAGHLPGAAQP AAGFNKQPVATSLSCAKCKIEKPKGKINKGCTSALKKQCITSSKDKKSLS KAQMQYGEDDK Run BLAST on NCBI transcript from alignment at sc0000090:653758..657620- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009153 ID=TCONS_00009153|Name=TCONS_00009153|organism=Clytia hemisphaerica|type=transcript|length=3863bp|location=Sequence derived from alignment at sc0000090:653758..657620- (Clytia hemisphaerica) AAAGTAAATCACATTTTATTTATTTTTGTTACAGCGTATCATAGTGTGAA
GTTGTTTTATGTCTTATCTTCTAATTCTACATATTATATTTTGATTATTA
ATGATTTTGGATTTTTTGGTTTTAATTTTTTTTCAGAATTTATAGGTCGG
ACGAGAATGCGGTGATTTTAGCATTTTCGTTTCATTTATTTGGGAGTTTC
TTACACAGGGAGTATATCTATAGATGTCTGTAAAATGAAGAGTAAAACGG
CTTGAGAAAAGAAGACACATTATTGTGTCATATTTAACTATAAACTAGCT
GTACCGAATCTTTTTTTCTTTGAAAAACGCGTACTAAACAGTAATATTTT
TCCAAAAATAAAAACACATTCGTTATTTCAGGATAAAGTATTTAAAAAGA
AACAAAATGTGGAAGATCGTAGCTGTGTTTTGCTTGTACGTCCAAATGAC
GTACGGCGCCGTCAATGAACTGACGGATAATGATTTCTACAGTTACGCAG
CAAAGAAGCAAGTTTTATTGGTCAACTTTTATGCACCATGGTAAGTTACA
GTTTAAATGGCAATACATATATTTTGAAAAGGGACTGGGTTCGAGTTTGA
TTGGTTCATTCCCAGCTGGCACACAGCGTTGTTTCAACGTTCATCTAATG
TTATATGGACGTTGTGAACGTTAAATAAACATTGAAACAACGTTGTGTGC
CAGCTGGGATTACCTCGTCATCGACTTTTTACTATCTAACCTCAATTACA
ATAGGTGCAGTGACTGTGCAAATTTGAATCCACATTTTGAAGGCGCAGCG
ACCACCCTTGGACCACGCGGTGCTGACTTGGCTAAAGTAAGGGCTTGGTT
TTTAGGCTAAATTCTACCCCTCCTTCTCACAGACCTGTTGGTACCCCCTC
CTACTCACAGACATGTTGGGACCCCCTCCTACTGGAAAAATTGGTCAAAA
TATCGTCCCCAGTGGAATATTACACGATTTTTGTCCCCGCTGAAGAAAAT
CAATTAAACAAATCTTAACTGCAAAATATTGTCCTGTTTTTCCGATCCCC
ACTGAATTTTCTGACTTGAAAACAAAGGGAAATCGAATTCTCAGCCATAA
AAACTTGGGAATATTGATCAATCCCCATCGAGTTTCAGTTCGTGATTTTT
ACCCCCACTGGTAGTTATCTGTGAGAAGGGGGTGTAATGCTCGACATCTA
AATTTTCTTATAATCGTACAAAACTATATTACTGTGAAACATATTTTATA
GAATACCCCCTTCTCACAAACCCGGTAGGATTTTTTCAGTCAGTGGGGGT
AAAAATAACGGACTGAAAATGGCTGGGGATGTCAATTATTTTGTTTTTAA
GTCAGATAATTCAGTGGGAATGGCAAAAATAACATAATATTTGAAGTGAG
GATTGGTTTATTTGATTATTTTCATTGGGGACAAAAGATGGAAATTAATT
TTCCACCGGAGACGATATTTTGGCTAATTTTTCCAGTGGGAAGGAGTCCC
ACCAGGTCTGCGAGAAGAGGGTGTTTATAATAACCGAGTTCAATTTTATG
CTTCTTTCTTATCAGTTTGTCTATTCTTAGCTTGTTATTTTTTTGCGACG
ATATTGAACAAGGTTCTAGTCTTTTCCGTTTTTAACGGTCATTTGGAAAA
ACTGATTCTACTCTTGAATCTCTTTCCAACGACAGCTAAATATAACAGCC
TTGATTCTACGTAGCTCAATAAATGAATTTGAGCTTTTTATCAAATAGTG
AAAAATCATTCGAAATCGTTAGGAAAGATTCATTTAGGCGAAAATAAAAA
AATGGTCGGCCGGCCGCAGACTATGGGCTCCTATATATGGTTCAGTTCAG
CATAAAGAAAATCAAGTTAACCGTTCAAGCTATCAAACGTCGTTTGGTTA
GATATTCCCGCTTGTAAATGAAGTTTTATTCGTTAGTAGTTGATACATTA
GTATTTTTTCCGACCGGCCGAATGAGAGCTTCGTTCCTTCACCTGCATTC
TGGAAACACTATATTTTTTTTTATTTTCGCTATGCCAAATCTTCAACAGA
ATTAAGTTTGTTGATAGATCTACTCTTGACTCTCTTTCCAACAACAGCTA
TACATATTATTTTTTTGTAGGTAGATTGCTTCGGAGCTGGTAAAGGGATG
TGTGAAATGTATTCCGTTAAAAGTTGGCCACAACTGAAATCTTTTCACTT
TGGAACATACAATGGTGACTATACCGGGNTAAAGGGATGTGTGAAATGTA
TTCCGTTAAAAGTTGGCCACAACTGAAATCTTTTCACTTTGGAACGTACA
ATGGTGACTATACCGGGCCACAAACCACAGGTGAGTAATCAGTAATACTA
ATAGATACGTGTGTAGAATGTTATTTCTTCTCCACTTCAACACTGGTGCT
ATTTAACAACAAAGAGTAATTAGAACTCAAAGCTCTTTTTCAAGAAAATC
TTCCCTTTGAAATGAAAACAAACCTCAGTCCGTAGAAAACTCAATTAAAA
AATAGAGGTTTGATTGAAAGAAATAGTCTGATTGCCATAATAGTACCAAC
GAGATCGTGTATATTTCCATGTAATCATTCTCATTTTGAATTAAACATAT
TTGACTTCTAGATGGGATTGCAAACTATATTAACACTGTTGAAAACAGCG
CTGCACCGCAAGTAGCACCAGAGCAGCCTGCGGGTAACCCATACGCCGGA
CACTTACCAGGTGCCGCACAACCGGCAGCCGGATTCAACAAACAACCTGT
TGCAACATCCCTCTCATGTGCGAAATGCAAAATCGAAAAACCAAAAGGAA
AAATTAGTAAGTTGAGTTTTACGCCTGTCTTATGGTAAAACGTTTAAGTA
AGTTACGCATCGGTTTGGTATAGATTTAGACTGGCACGCCAATCGGGCTG
GAACAGTGAACGCAGGATTTTAGGATTTAGGTTAGCCTATCTCTATCCCA
ACATGCGGTTTTTTATCACTCTCGTTTTGAGCTTTATTTACAAAAACGCG
CCTTCGCGGTGACAAATTTTATTGATAGAGTTTTTGCTGCAGTCAAAAGC
TACGGTCCTTTGGTTTAAGCAGAGAATTTCTATTCCCCCAAGAATCTCTT
GGGAATAAATGTAAAAGGTTACAGACGGAACGGCGTCGAGGAAAAAGCCG
TGGTCGTTTGGTACAGGCAAGATTTAGGTAAGCTTAGGAAAAAAATTTGT
CAGATCATCAACTTCTGCTTGTTGTCCTACGTAACTCCTATTTTAGCAAA
CATCCACCGCCCTTCTGCTCCCGCCCTTATTAATTACCAAACTAGTTTGC
TAGTCTAGTATGAGGGGATTTATCTAAAGGATCCTGCATTTGCTAAAAAT
AGACTAAAAGAACGACAAATTTCATAAAAAACGACAAATGTCGCAATCCA
CAGCCCCGACCGATTGTGACTGTAGCACCCCTACGTATTCATTCCTCTTT
ACTTATCACGGGAATTAACTACATGTGGTTTGAAGAACGACAAATTACGC
ATGCATGTTACAATGTAGGATTCTTTAGAGGAACAGACTGTATAGATTTT
GCTACAGAAATAATTTTATGAATCCTTCTTTTTTTATATAGATAAAGGAT
GTACGTCAGCTTTGAAGAAACAGTGTATCACAAGCAGTAAGGATAAAAAA
TCTTTATCCAAAGCACAAATGCAATATGGTGAAGATGACAAATAAACATG
CATGCATGCGCATGGCTTTTTCTTATCACGTGATCAACAGTTAACCAATT
TGACCAATTATCTTTGTATTATTTTTTGATCTTATCAAAATCTTGTATAT
TTTCCTATCATTACATGATAAATATATTTTTTCATACCAGAAATTGTCTT
GATTATTACTACA Coding sequence (CDS) from alignment at sc0000090:653758..657620- >TCONS_00009153 ID=TCONS_00009153|Name=TCONS_00009153|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at sc0000090:653758..657620- (Clytia hemisphaerica) ATAAAGGATGTACGTCAGCTTTGAAGAAACAGTGTATCACAAGCAGTAAG GATAAAAAATCTTTATCCAAAGCACAAATGCAATATGGTGAAGATGACAA ATAAATGGGATTGCAAACTATATTAACACTGTTGAAAACAGCGCTGCACC GCAAGTAGCACCAGAGCAGCCTGCGGGTAACCCATACGCCGGACACTTAC CAGGTGCCGCACAACCGGCAGCCGGATTCAACAAACAACCTGTTGCAACA TCCCTCTCATGTGCGAAATGCAAAATCGAAAAACCAAAAGGAAAAATTAG TGTGAAATGTATTCCGTTAAAAGTTGGCCACAACTGAAATCTTTTCACTT TGGAACGTACAATGGTGACTATACCGGGCCACAAACCACAGGTAGATTGC TTCGGAGCTGGTAAAGGGATGTGCAGTGACTGTGCAAATTTGAATCCACA TTTTGAAGGCGCAGCGACCACCCTTGGACCACGCGGTGCTGACTTGGCTA AAATGTGGAAGATCGTAGCTGTGTTTTGCTTGTACGTCCAAATGACGTAC GGCGCCGTCAATGAACTGACGGATAATGATTTCTACAGTTACGCAGCAAA GAAGCAAGTTTTATTGGTCAACTTTTATGCACCATGATAAAGGATGTACG TCAGCTTTGAAGAAACAGTGTATCACAAGCAGTAAGGATAAAAAATCTTT ATCCAAAGCACAAATGCAATATGGTGAAGATGACAAATAAATGGGATTGC AAACTATATTAACACTGTTGAAAACAGCGCTGCACCGCAAGTAGCACCAG AGCAGCCTGCGGGTAACCCATACGCCGGACACTTACCAGGTGCCGCACAA CCGGCAGCCGGATTCAACAAACAACCTGTTGCAACATCCCTCTCATGTGC GAAATGCAAAATCGAAAAACCAAAAGGAAAAATTAGTGTGAAATGTATTC CGTTAAAAGTTGGCCACAACTGAAATCTTTTCACTTTGGAACGTACAATG GTGACTATACCGGGCCACAAACCACAGGTAGATTGCTTCGGAGCTGGTAA AGGGATGTGCAGTGACTGTGCAAATTTGAATCCACATTTTGAAGGCGCAG CGACCACCCTTGGACCACGCGGTGCTGACTTGGCTAAAATGTGGAAGATC GTAGCTGTGTTTTGCTTGTACGTCCAAATGACGTACGGCGCCGTCAATGA ACTGACGGATAATGATTTCTACAGTTACGCAGCAAAGAAGCAAGTTTTAT TGGTCAACTTTTATGCACCATGATAAAGGATGTACGTCAGCTTTGAAGAA ACAGTGTATCACAAGCAGTAAGGATAAAAAATCTTTATCCAAAGCACAAA TGCAATATGGTGAAGATGACAAATAAATGGGATTGCAAACTATATTAACA CTGTTGAAAACAGCGCTGCACCGCAAGTAGCACCAGAGCAGCCTGCGGGT AACCCATACGCCGGACACTTACCAGGTGCCGCACAACCGGCAGCCGGATT CAACAAACAACCTGTTGCAACATCCCTCTCATGTGCGAAATGCAAAATCG AAAAACCAAAAGGAAAAATTAGTGTGAAATGTATTCCGTTAAAAGTTGGC CACAACTGAAATCTTTTCACTTTGGAACGTACAATGGTGACTATACCGGG CCACAAACCACAGGTAGATTGCTTCGGAGCTGGTAAAGGGATGTGCAGTG ACTGTGCAAATTTGAATCCACATTTTGAAGGCGCAGCGACCACCCTTGGA CCACGCGGTGCTGACTTGGCTAAAATGTGGAAGATCGTAGCTGTGTTTTG CTTGTACGTCCAAATGACGTACGGCGCCGTCAATGAACTGACGGATAATG ATTTCTACAGTTACGCAGCAAAGAAGCAAGTTTTATTGGTCAACTTTTAT GCACCATGATAAAGGATGTACGTCAGCTTTGAAGAAACAGTGTATCACAA GCAGTAAGGATAAAAAATCTTTATCCAAAGCACAAATGCAATATGGTGAA GATGACAAATAAATGGGATTGCAAACTATATTAACACTGTTGAAAACAGC GCTGCACCGCAAGTAGCACCAGAGCAGCCTGCGGGTAACCCATACGCCGG ACACTTACCAGGTGCCGCACAACCGGCAGCCGGATTCAACAAACAACCTG TTGCAACATCCCTCTCATGTGCGAAATGCAAAATCGAAAAACCAAAAGGA AAAATTAGTGTGAAATGTATTCCGTTAAAAGTTGGCCACAACTGAAATCT TTTCACTTTGGAACGTACAATGGTGACTATACCGGGCCACAAACCACAGG TAGATTGCTTCGGAGCTGGTAAAGGGATGTGCAGTGACTGTGCAAATTTG AATCCACATTTTGAAGGCGCAGCGACCACCCTTGGACCACGCGGTGCTGA CTTGGCTAAAATGTGGAAGATCGTAGCTGTGTTTTGCTTGTACGTCCAAA TGACGTACGGCGCCGTCAATGAACTGACGGATAATGATTTCTACAGTTAC GCAGCAAAGAAGCAAGTTTTATTGGTCAACTTTTATGCACCATGATAAAG GATGTACGTCAGCTTTGAAGAAACAGTGTATCACAAGCAGTAAGGATAAA AAATCTTTATCCAAAGCACAAATGCAATATGGTGAAGATGACAAATAAAT GGGATTGCAAACTATATTAACACTGTTGAAAACAGCGCTGCACCGCAAGT AGCACCAGAGCAGCCTGCGGGTAACCCATACGCCGGACACTTACCAGGTG CCGCACAACCGGCAGCCGGATTCAACAAACAACCTGTTGCAACATCCCTC TCATGTGCGAAATGCAAAATCGAAAAACCAAAAGGAAAAATTAGTGTGAA ATGTATTCCGTTAAAAGTTGGCCACAACTGAAATCTTTTCACTTTGGAAC GTACAATGGTGACTATACCGGGCCACAAACCACAGGTAGATTGCTTCGGA GCTGGTAAAGGGATGTGCAGTGACTGTGCAAATTTGAATCCACATTTTGA AGGCGCAGCGACCACCCTTGGACCACGCGGTGCTGACTTGGCTAAAATGT GGAAGATCGTAGCTGTGTTTTGCTTGTACGTCCAAATGACGTACGGCGCC GTCAATGAACTGACGGATAATGATTTCTACAGTTACGCAGCAAAGAAGCA AGTTTTATTGGTCAACTTTTATGCACCATGATAAAGGATGTACGTCAGCT TTGAAGAAACAGTGTATCACAAGCAGTAAGGATAAAAAATCTTTATCCAA AGCACAAATGCAATATGGTGAAGATGACAAATAAATGGGATTGCAAACTA TATTAACACTGTTGAAAACAGCGCTGCACCGCAAGTAGCACCAGAGCAGC CTGCGGGTAACCCATACGCCGGACACTTACCAGGTGCCGCACAACCGGCA GCCGGATTCAACAAACAACCTGTTGCAACATCCCTCTCATGTGCGAAATG CAAAATCGAAAAACCAAAAGGAAAAATTAGTGTGAAATGTATTCCGTTAA AAGTTGGCCACAACTGAAATCTTTTCACTTTGGAACGTACAATGGTGACT ATACCGGGCCACAAACCACAGGTAGATTGCTTCGGAGCTGGTAAAGGGAT GTGCAGTGACTGTGCAAATTTGAATCCACATTTTGAAGGCGCAGCGACCA CCCTTGGACCACGCGGTGCTGACTTGGCTAAAATGTGGAAGATCGTAGCT GTGTTTTGCTTGTACGTCCAAATGACGTACGGCGCCGTCAATGAACTGAC GGATAATGATTTCTACAGTTACGCAGCAAAGAAGCAAGTTTTATTGGTCA ACTTTTATGCACCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009153-exon-sc0000090-1575043694:657081..657620 | TCONS_00009153-exon-sc0000090-1575043694:657081..657620 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1575043694:656785..656866 | TCONS_00009153-exon-sc0000090-1575043694:656785..656866 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1575043694:655472..655500 | TCONS_00009153-exon-sc0000090-1575043694:655472..655500 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1575043694:655291..655382 | TCONS_00009153-exon-sc0000090-1575043694:655291..655382 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1575043694:654815..655009 | TCONS_00009153-exon-sc0000090-1575043694:654815..655009 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1575043694:653758..654029 | TCONS_00009153-exon-sc0000090-1575043694:653758..654029 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1510915933:657081..657620 | TCONS_00009153-exon-sc0000090-1510915933:657081..657620 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1510915933:656785..656866 | TCONS_00009153-exon-sc0000090-1510915933:656785..656866 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1510915933:655472..655500 | TCONS_00009153-exon-sc0000090-1510915933:655472..655500 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1510915933:655291..655382 | TCONS_00009153-exon-sc0000090-1510915933:655291..655382 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1510915933:654815..655009 | TCONS_00009153-exon-sc0000090-1510915933:654815..655009 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1510915933:653758..654029 | TCONS_00009153-exon-sc0000090-1510915933:653758..654029 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1491911889:657081..657620 | TCONS_00009153-exon-sc0000090-1491911889:657081..657620 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1491911889:656785..656866 | TCONS_00009153-exon-sc0000090-1491911889:656785..656866 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1491911889:655472..655500 | TCONS_00009153-exon-sc0000090-1491911889:655472..655500 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1491911889:655291..655382 | TCONS_00009153-exon-sc0000090-1491911889:655291..655382 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1491911889:654815..655009 | TCONS_00009153-exon-sc0000090-1491911889:654815..655009 | Clytia hemisphaerica | exon |
TCONS_00009153-exon-sc0000090-1491911889:653758..654029 | TCONS_00009153-exon-sc0000090-1491911889:653758..654029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000090 | supercontig | sc0000090:653758..657620 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013766 | Thioredoxin_domain |
IPR012336 | Thioredoxin-like_fold |
Vocabulary: Biological Process
Term | Definition |
GO:0045454 | cell redox homeostasis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0045454 |
cell redox homeostasis |
Blast
The following BLAST results are available for this feature:
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