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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008773 ID=TCONS_00008773|Name=TCONS_00008773|organism=Clytia hemisphaerica|type=transcript|length=1752bp
CACACATGAATTATTTTCATGCTATAAAAAAATGCTTTCTGAACAGAAAA
GTAGACTCGTTTGATTTTTACTGCTGGATGAAAAATGTGACAATGTTTAA
TGATAAATGTTAGAAAATTTGGAAGATTGATACTTAAAACTTTGATGGTA
ATGTTATACTACAAACTAATGGAGTATTTATCACTAATGATAATTAAACT
AAACTTATCATAATTATGGAATCTCATCAAGACaactttccaaaagaaaa
tcaatacaAGCCAACCACAATCTGCACAATCACAACAAGTGAAGAAAAAT
CTTACGGAGCAagcaaaattgtgaaaaaagaagaaataattaCGTTGgat
gaaaataataacaatcaAGCAGAATCGAATGATGAAATTGATGCATCTAA
AACTTTCCACAATTATCATCATACAAATTATAGTGATCATTACCCAATGG
TAAAACGAGGGTATTCTGCAACCAAAGACGTGTACCCACATGAAGATTTT
AAAACAGGACCTGTATCACCTAACAGTACACCTTTTGTTACCCCTTCTGA
CCGCCTGGCAAGGGAAGCGGACTACATGTTTAACAATCGTTATGCACTGC
CACCATACCACCCACATGCGCCACCATATTTACCTCATCATGGATATATA
GGATTGCAGCAAACTACACCTGAAAATCAggGTTCAAccgaaaatcatcc
aaatccATTCGTCTCTTCAATGGATCATCAATATCTACCCCCTATCCAGC
AATTGGATGGTGGTACACTTCACATACCACAAGGCTTCAGCCATGCATAT
CAATGGAAACATATGATGGCCAATCAGAACTCACCACCATCACCTATTGT
TTCTCCTAGCAACGAGATGCCACCATCTTGGAATAAACATGTTTACGCTA
CCAACGGTGTTAGCTCTCCTACAGAAACGAGCACAAATAATGTGACTACC
AATAGCCCTACACCAACAATGATAAATGCCGctaaagatggCTTGACTTT
ACTGGATTCTAACGGACATCGGCGTAAACGAACAGCTTATTCACGAGCAC
AACTTGCACAACTTGAAGCACAATTTATAGAAAGCCATTTCTTAACTAGA
GAACGTCGATGTGAATTATCCAATTGTCTTGGACTAAGTGAGCGACAAGT
CAAAATCTGGTTTCAAAATCGGCGAATGAAAGCTAAAAGGAAATCCATGA
GTTTATCGTCACCACCCCCTGGTTTTGGTGCATATCACATAGTTCGTTTA
CCCCCTGGAATGATTCCTGGTCACCACCCAATGGTCAACGTAAACGGACC
TTTTATTCGTCcagtttttcaaccaatcaaaactgAGCCTGAAACAATGG
ATTCACCacctttgatgacgtcagcttTTCGTCGAAAAAGTGTCGGTGAT
GTGCCGACTATGATGCAACCGAGCCGACTCTTTCATCCACGACCGACTTT
TTTTAACGACAGAGATTTTTTTAAGAGTTCCGAACGTGAGTATTATCGCA
AATTGAGTCCAGTCGAAACGGAAGATCCTCAAGTGAACTTGAAAGCCTCA
GAAGATCAACAAGAAGACGAGtaagaaagaaaaactttctcaaaaccttt
tttaatattttgaaacaCAGGCACCTCTTTTtgcaaatttgatgtttttt
tagtCCAGagagtttatttttgtaaatagtcTAAAccgttttgaaaattt
aatgacttATTCATTTCCGAGCGGAATTTCGGATGAAATAATATTACTTG
CG Run BLAST on NCBI protein sequence of Hox9-14B homeodomain transcription factor protein >TCONS_00008773-protein ID=TCONS_00008773-protein|Name=Hox9-14B homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MESHQDNFPKENQYKPTTICTITTSEEKSYGASKIVKKEEIITLDENNNN
QAESNDEIDASKTFHNYHHTNYSDHYPMVKRGYSATKDVYPHEDFKTGPV
SPNSTPFVTPSDRLAREADYMFNNRYALPPYHPHAPPYLPHHGYIGLQQT
TPENQGSTENHPNPFVSSMDHQYLPPIQQLDGGTLHIPQGFSHAYQWKHM
MANQNSPPSPIVSPSNEMPPSWNKHVYATNGVSSPTETSTNNVTTNSPTP
TMINAAKDGLTLLDSNGHRRKRTAYSRAQLAQLEAQFIESHFLTRERRCE
LSNCLGLSERQVKIWFQNRRMKAKRKSMSLSSPPPGFGAYHIVRLPPGMI
PGHHPMVNVNGPFIRPVFQPIKTEPETMDSPPLMTSAFRRKSVGDVPTMM
QPSRLFHPRPTFFNDRDFFKSSEREYYRKLSPVETEDPQVNLKASEDQQE
DE Run BLAST on NCBI transcript from alignment at sc0000087:265672..268093- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008773 ID=TCONS_00008773|Name=TCONS_00008773|organism=Clytia hemisphaerica|type=transcript|length=2422bp|location=Sequence derived from alignment at sc0000087:265672..268093- (Clytia hemisphaerica)
CACACATGAATTATTTTCATGCTATAAAAAAATGCTTTCTGAACAGAAAA
GTAGACTCGTTTGATTTTTACTGCTGGATGAAAAATGTGACAATGTTTAA
TGATAAATGTTAGAAAATTTGGAAGATTGATACTTAAAACTTTGATGGTA
ATGTTATACTACAAACTAATGGAGTATTTATCACTAATGATAATTAAACT
AAACTTATCATAATTATGGAATCTCATCAAGACAACTTTCCAAAAGAAAA
TCAATACAAGCCAACCACAATCTGCACAATCACAACAAGTGAAGAAAAAT
CTTACGGAGCAAGCAAAATTGTGAAAAAAGAAGAAATAATTACGTTGGAT
GAAAATAATAACAATCAAGCAGAATCGAATGATGAAATTGATGCATCTAA
AACTTTCCACAATTATCATCATACAAATTATAGTGATCATTACCCAATGG
TAAAACGAGGGTATTCTGCAACCAAAGACGTGTACCCACATGAAGATTTT
AAAACAGGACCTGTATCACCTAACAGTACACCTTTTGTTACCCCTTCTGA
CCGCCTGGCAAGGGAAGCGGACTACATGTTTAACAATCGTTATGCACTGC
CACCATACCACCCACATGCGCCACCATATTTACCTCATCATGGATATATA
GGATTGCAGCAAACTACACCTGAAAATCAGGGTAAAAATGAAATTTAAAT
ATGAAATGTTAGTTGATCTATTGATTAAAATGAGCCTGTGGTTTTTGGGA
ATTTTTTGGAATTTTCTTCAGTGTTTCATCATTTTGATGATCTTATGGCT
AATTATATTTTTTAGGGTTTCTGGCATTTTTATTTTTTATTTTCAAGATT
TTGGAAGATTTTCTAAGATTTTTGGAATCCTTTTGAGATTTAATTATTTC
AGATTATTTAAAAAGTTAATTATTCGGACTTTCCAATTTTCCTCTTTTTT
TTAAAAAATTTTCTAAGATTTTCAAGAAAGGGAAAAATCCCTTTATTGAG
AAGAATTGAGAAAAATAACTTCTTGTATCATAGATTTTTTTCTTTTAACC
AAAAAGCCTCAGAAAGTCCAATGACCTCCAAGGAACGCTAAATAGAATTG
AAAAACTTTATCTGAACTTCCATATCTCAAATTCATAAAAATAATTTTCT
ATTCTTCGAATTTTCAGGTTCAACCGAAAATCATCCAAATCCATTCGTCT
CTTCAATGGATCATCAATATCTACCCCCTATCCAGCAATTGGATGGTGGT
ACACTTCACATACCACAAGGCTTCAGCCATGCATATCAATGGAAACATAT
GATGGCCAATCAGAACTCACCACCATCACCTATTGTTTCTCCTAGCAACG
AGATGCCACCATCTTGGAATAAACATGTTTACGCTACCAACGGTGTTAGC
TCTCCTACAGAAACGAGCACAAATAATGTGACTACCAATAGCCCTACACC
AACAATGATAAATGCCGCTAAAGGTTTTTTTAAAATATTACCAAAAATAT
TATGTGAAACACGTTTGTTGTTTTCAAGAAAGATCTAAAAAGTCAAGGAA
TAATAGAAATTCATCCTGAAAAGAAATGTAACTAATACCTGGAAAGCTTT
TCTATGCGCAGATTTTCTCTTGAAAAATCTTTAAATTGTATTTCTTTTCT
TTTTCAGATGGCTTGACTTTACTGGATTCTAACGGACATCGGCGTAAACG
AACAGCTTATTCACGAGCACAACTTGCACAACTTGAAGCACAATTTATAG
AAAGCCATTTCTTAACTAGAGAACGTCGATGTGAATTATCCAATTGTCTT
GGACTAAGTGAGCGACAAGTCAAAATCTGGTTTCAAAATCGGCGAATGAA
AGCTAAAAGGAAATCCATGAGTTTATCGTCACCACCCCCTGGTTTTGGTG
CATATCACATAGTTCGTTTACCCCCTGGAATGATTCCTGGTCACCACCCA
ATGGTCAACGTAAACGGACCTTTTATTCGTCCAGTTTTTCAACCAATCAA
AACTGAGCCTGAAACAATGGATTCACCACCTTTGATGACGTCAGCTTTTC
GTCGAAAAAGTGTCGGTGATGTGCCGACTATGATGCAACCGAGCCGACTC
TTTCATCCACGACCGACTTTTTTTAACGACAGAGATTTTTTTAAGAGTTC
CGAACGTGAGTATTATCGCAAATTGAGTCCAGTCGAAACGGAAGATCCTC
AAGTGAACTTGAAAGCCTCAGAAGATCAACAAGAAGACGAGTAAGAAAGA
AAAACTTTCTCAAAACCTTTTTTAATATTTTGAAACACAGGCACCTCTTT
TTGCAAATTTGATGTTTTTTTAGTCCAGAGAGTTTATTTTTGTAAATAGT
CTAAACCGTTTTGAAAATTTAATGACTTATTCATTTCCGAGCGGAATTTC
GGATGAAATAATATTACTTGCG Coding sequence (CDS) from alignment at sc0000087:265672..268093- >TCONS_00008773 ID=TCONS_00008773|Name=TCONS_00008773|organism=Clytia hemisphaerica|type=CDS|length=4077bp|location=Sequence derived from alignment at sc0000087:265672..268093- (Clytia hemisphaerica)
ATGGCTTGACTTTACTGGATTCTAACGGACATCGGCGTAAACGAACAGCT
TATTCACGAGCACAACTTGCACAACTTGAAGCACAATTTATAGAAAGCCA
TTTCTTAACTAGAGAACGTCGATGTGAATTATCCAATTGTCTTGGACTAA
GTGAGCGACAAGTCAAAATCTGGTTTCAAAATCGGCGAATGAAAGCTAAA
AGGAAATCCATGAGTTTATCGTCACCACCCCCTGGTTTTGGTGCATATCA
CATAGTTCGTTTACCCCCTGGAATGATTCCTGGTCACCACCCAATGGTCA
ACGTAAACGGACCTTTTATTCGTCCAGTTTTTCAACCAATCAAAACTGAG
CCTGAAACAATGGATTCACCACCTTTGATGACGTCAGCTTTTCGTCGAAA
AAGTGTCGGTGATGTGCCGACTATGATGCAACCGAGCCGACTCTTTCATC
CACGACCGACTTTTTTTAACGACAGAGATTTTTTTAAGAGTTCCGAACGT
GAGTATTATCGCAAATTGAGTCCAGTCGAAACGGAAGATCCTCAAGTGAA
CTTGAAAGCCTCAGAAGATCAACAAGAAGACGAGTAAGTTCAACCGAAAA
TCATCCAAATCCATTCGTCTCTTCAATGGATCATCAATATCTACCCCCTA
TCCAGCAATTGGATGGTGGTACACTTCACATACCACAAGGCTTCAGCCAT
GCATATCAATGGAAACATATGATGGCCAATCAGAACTCACCACCATCACC
TATTGTTTCTCCTAGCAACGAGATGCCACCATCTTGGAATAAACATGTTT
ACGCTACCAACGGTGTTAGCTCTCCTACAGAAACGAGCACAAATAATGTG
ACTACCAATAGCCCTACACCAACAATGATAAATGCCGCTAAAGATGGAAT
CTCATCAAGACAACTTTCCAAAAGAAAATCAATACAAGCCAACCACAATC
TGCACAATCACAACAAGTGAAGAAAAATCTTACGGAGCAAGCAAAATTGT
GAAAAAAGAAGAAATAATTACGTTGGATGAAAATAATAACAATCAAGCAG
AATCGAATGATGAAATTGATGCATCTAAAACTTTCCACAATTATCATCAT
ACAAATTATAGTGATCATTACCCAATGGTAAAACGAGGGTATTCTGCAAC
CAAAGACGTGTACCCACATGAAGATTTTAAAACAGGACCTGTATCACCTA
ACAGTACACCTTTTGTTACCCCTTCTGACCGCCTGGCAAGGGAAGCGGAC
TACATGTTTAACAATCGTTATGCACTGCCACCATACCACCCACATGCGCC
ACCATATTTACCTCATCATGGATATATAGGATTGCAGCAAACTACACCTG
AAAATCAGGATGGCTTGACTTTACTGGATTCTAACGGACATCGGCGTAAA
CGAACAGCTTATTCACGAGCACAACTTGCACAACTTGAAGCACAATTTAT
AGAAAGCCATTTCTTAACTAGAGAACGTCGATGTGAATTATCCAATTGTC
TTGGACTAAGTGAGCGACAAGTCAAAATCTGGTTTCAAAATCGGCGAATG
AAAGCTAAAAGGAAATCCATGAGTTTATCGTCACCACCCCCTGGTTTTGG
TGCATATCACATAGTTCGTTTACCCCCTGGAATGATTCCTGGTCACCACC
CAATGGTCAACGTAAACGGACCTTTTATTCGTCCAGTTTTTCAACCAATC
AAAACTGAGCCTGAAACAATGGATTCACCACCTTTGATGACGTCAGCTTT
TCGTCGAAAAAGTGTCGGTGATGTGCCGACTATGATGCAACCGAGCCGAC
TCTTTCATCCACGACCGACTTTTTTTAACGACAGAGATTTTTTTAAGAGT
TCCGAACGTGAGTATTATCGCAAATTGAGTCCAGTCGAAACGGAAGATCC
TCAAGTGAACTTGAAAGCCTCAGAAGATCAACAAGAAGACGAGTAAGTTC
AACCGAAAATCATCCAAATCCATTCGTCTCTTCAATGGATCATCAATATC
TACCCCCTATCCAGCAATTGGATGGTGGTACACTTCACATACCACAAGGC
TTCAGCCATGCATATCAATGGAAACATATGATGGCCAATCAGAACTCACC
ACCATCACCTATTGTTTCTCCTAGCAACGAGATGCCACCATCTTGGAATA
AACATGTTTACGCTACCAACGGTGTTAGCTCTCCTACAGAAACGAGCACA
AATAATGTGACTACCAATAGCCCTACACCAACAATGATAAATGCCGCTAA
AGATGGAATCTCATCAAGACAACTTTCCAAAAGAAAATCAATACAAGCCA
ACCACAATCTGCACAATCACAACAAGTGAAGAAAAATCTTACGGAGCAAG
CAAAATTGTGAAAAAAGAAGAAATAATTACGTTGGATGAAAATAATAACA
ATCAAGCAGAATCGAATGATGAAATTGATGCATCTAAAACTTTCCACAAT
TATCATCATACAAATTATAGTGATCATTACCCAATGGTAAAACGAGGGTA
TTCTGCAACCAAAGACGTGTACCCACATGAAGATTTTAAAACAGGACCTG
TATCACCTAACAGTACACCTTTTGTTACCCCTTCTGACCGCCTGGCAAGG
GAAGCGGACTACATGTTTAACAATCGTTATGCACTGCCACCATACCACCC
ACATGCGCCACCATATTTACCTCATCATGGATATATAGGATTGCAGCAAA
CTACACCTGAAAATCAGGATGGCTTGACTTTACTGGATTCTAACGGACAT
CGGCGTAAACGAACAGCTTATTCACGAGCACAACTTGCACAACTTGAAGC
ACAATTTATAGAAAGCCATTTCTTAACTAGAGAACGTCGATGTGAATTAT
CCAATTGTCTTGGACTAAGTGAGCGACAAGTCAAAATCTGGTTTCAAAAT
CGGCGAATGAAAGCTAAAAGGAAATCCATGAGTTTATCGTCACCACCCCC
TGGTTTTGGTGCATATCACATAGTTCGTTTACCCCCTGGAATGATTCCTG
GTCACCACCCAATGGTCAACGTAAACGGACCTTTTATTCGTCCAGTTTTT
CAACCAATCAAAACTGAGCCTGAAACAATGGATTCACCACCTTTGATGAC
GTCAGCTTTTCGTCGAAAAAGTGTCGGTGATGTGCCGACTATGATGCAAC
CGAGCCGACTCTTTCATCCACGACCGACTTTTTTTAACGACAGAGATTTT
TTTAAGAGTTCCGAACGTGAGTATTATCGCAAATTGAGTCCAGTCGAAAC
GGAAGATCCTCAAGTGAACTTGAAAGCCTCAGAAGATCAACAAGAAGACG
AGTAAGTTCAACCGAAAATCATCCAAATCCATTCGTCTCTTCAATGGATC
ATCAATATCTACCCCCTATCCAGCAATTGGATGGTGGTACACTTCACATA
CCACAAGGCTTCAGCCATGCATATCAATGGAAACATATGATGGCCAATCA
GAACTCACCACCATCACCTATTGTTTCTCCTAGCAACGAGATGCCACCAT
CTTGGAATAAACATGTTTACGCTACCAACGGTGTTAGCTCTCCTACAGAA
ACGAGCACAAATAATGTGACTACCAATAGCCCTACACCAACAATGATAAA
TGCCGCTAAAGATGGAATCTCATCAAGACAACTTTCCAAAAGAAAATCAA
TACAAGCCAACCACAATCTGCACAATCACAACAAGTGAAGAAAAATCTTA
CGGAGCAAGCAAAATTGTGAAAAAAGAAGAAATAATTACGTTGGATGAAA
ATAATAACAATCAAGCAGAATCGAATGATGAAATTGATGCATCTAAAACT
TTCCACAATTATCATCATACAAATTATAGTGATCATTACCCAATGGTAAA
ACGAGGGTATTCTGCAACCAAAGACGTGTACCCACATGAAGATTTTAAAA
CAGGACCTGTATCACCTAACAGTACACCTTTTGTTACCCCTTCTGACCGC
CTGGCAAGGGAAGCGGACTACATGTTTAACAATCGTTATGCACTGCCACC
ATACCACCCACATGCGCCACCATATTTACCTCATCATGGATATATAGGAT
TGCAGCAAACTACACCTGAAAATCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008773-exon-sc0000087-1575043694:267413..268093 | TCONS_00008773-exon-sc0000087-1575043694:267413..268093 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1575043694:266621..266926 | TCONS_00008773-exon-sc0000087-1575043694:266621..266926 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1575043694:265672..266436 | TCONS_00008773-exon-sc0000087-1575043694:265672..266436 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1510915933:267413..268093 | TCONS_00008773-exon-sc0000087-1510915933:267413..268093 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1510915933:266621..266926 | TCONS_00008773-exon-sc0000087-1510915933:266621..266926 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1510915933:265672..266436 | TCONS_00008773-exon-sc0000087-1510915933:265672..266436 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1491911889:267413..268093 | TCONS_00008773-exon-sc0000087-1491911889:267413..268093 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1491911889:266621..266926 | TCONS_00008773-exon-sc0000087-1491911889:266621..266926 | Clytia hemisphaerica | exon |
| TCONS_00008773-exon-sc0000087-1491911889:265672..266436 | TCONS_00008773-exon-sc0000087-1491911889:265672..266436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:265672..268093 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00008773 vs. Swiss-Prot (Human)
Match: HXC12 (Homeobox protein Hox-C12 OS=Homo sapiens GN=HOXC12 PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 6.015e-16 Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3
Query: 1020 RRKRTAYSRAQLAQLEAQFIESHFLTRERRCELSNCLGLSERQVKIWFQNRRMKAKR 1190
R+KR YS+ QLA+LE +F+ + F+TR+RR ELS+ L LS++QVKIWFQNRRMK KR
Sbjct: 215 RKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271
The following BLAST results are available for this feature:
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