Hox9-14B homeodomain transcription factor protein (polypeptide) - C. hemisphaerica

Overview
NameHox9-14B homeodomain transcription factor protein
Unique NameTCONS_00008773-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008773-protein ID=TCONS_00008773-protein|Name=Hox9-14B homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MESHQDNFPKENQYKPTTICTITTSEEKSYGASKIVKKEEIITLDENNNN
QAESNDEIDASKTFHNYHHTNYSDHYPMVKRGYSATKDVYPHEDFKTGPV
SPNSTPFVTPSDRLAREADYMFNNRYALPPYHPHAPPYLPHHGYIGLQQT
TPENQGSTENHPNPFVSSMDHQYLPPIQQLDGGTLHIPQGFSHAYQWKHM
MANQNSPPSPIVSPSNEMPPSWNKHVYATNGVSSPTETSTNNVTTNSPTP
TMINAAKDGLTLLDSNGHRRKRTAYSRAQLAQLEAQFIESHFLTRERRCE
LSNCLGLSERQVKIWFQNRRMKAKRKSMSLSSPPPGFGAYHIVRLPPGMI
PGHHPMVNVNGPFIRPVFQPIKTEPETMDSPPLMTSAFRRKSVGDVPTMM
QPSRLFHPRPTFFNDRDFFKSSEREYYRKLSPVETEDPQVNLKASEDQQE
DE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004917XLOC_004917Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008773TCONS_00008773Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 297..306
score: 42.82
coord: 306..322
score: 66.25
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 305..315
score: 67.01
coord: 290..301
score: 36.39
coord: 315..324
score: 80.41
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 268..330
e-value: 9.2E-25
score: 98.3
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 269..325
e-value: 2.2E-19
score: 68.9
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 266..326
score: 20.649
NoneNo IPR availableGENE3D1.10.10.60coord: 158..329
e-value: 5.1E-23
score: 80.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 429..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..170
NoneNo IPR availableCDDcd00086homeodomaincoord: 269..327
e-value: 7.35006E-22
score: 87.684
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 301..324
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 248..326

Blast
[Close]
BLAST of Hox9-14B homeodomain transcription factor protein vs. Swiss-Prot (Human)
Match: HXB2 (Homeobox protein Hox-B2 OS=Homo sapiens GN=HOXB2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.251e-16
Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:  235 PTETSTNNVTTNSPTP-TMINAAKDGLTLLDSNGH--RRKRTAYSRAQLAQLEAQFIESHFLTRERRCELSNCLGLSERQVKIWFQNRRMKAKRKS 327
            P++++T+     S  P + + +  DGL L ++ G   RR RTAY+  QL +LE +F  + +L R RR E++  L L+ERQVK+WFQNRRMK KR++
Sbjct:  107 PSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQT 202
The following BLAST results are available for this feature:
BLAST of Hox9-14B homeodomain transcription factor protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HXB21.251e-1643.75Homeobox protein Hox-B2 OS=Homo sapiens GN=HOXB2 P... [more]
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