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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005920 ID=TCONS_00005920|Name=TCONS_00005920|organism=Clytia hemisphaerica|type=transcript|length=1833bp
ACAACATCTCAGTTACTTCCTTGATTAGCGCCAatttttaaagtgttatt
gTTTTGGTGTCCTTTTAAATTTGATGTCGTCAAACAATGATCAAAATCAT
TAAAGTGGCGGTAGAAAGTTCTCTTTAAATTCGGCAGCGATCAAGGCAGG
AAGGATGGATGAAAACAGATGCTCTGTCATTCAAGGCTACACAACAGCAG
ATTTTAATACAAATTCAAAGAGTAGCTGTAAAGAAAACAGTGCTCCAATC
GAACAAACGCATCAACAACAACTTCATCATATGGCGAATGGCTTTGTACC
CTCTTTTGCAATACATCAAGCTCAGATTTTACCTCCACCTTTTCCACCAA
ATTTGTCATATCCTCCAAAGCTCTACAAAGAAAGTGAGTATGTCAGAATG
TTTCCACCTATTGGCTTCAGTACAGTTCCTTTGACGATACAAGCTCCATT
GCTAAGCCATCATAAGTTAGCTCCTCCTGTGCTTGCTGTAAACGGACACA
TAAACCAGGAGAATCGAGCTGAGCcaacttcaaaaaaacaaaaatatgac
ttttccaTCAAAGCACTGACAGCTAAGGATGAAAATAAACCAACTCGCAA
ACCATTGGGCCTAAGCAACTCAGCAAATATACAAAATAATCCTATGTTTA
TGTTTCAACAACTACCACCATCAGAAGTCTGCAACAAATCTAACAACAAA
GAAAATGTTGGACAATCACCTTTATCCATTAAAAATCGTGGGAGACCAAG
TGCAGATGTTATCGAATTACTTAAACAGAGATCCATTCAAAGTCCTCACC
GGTATAGCTGTTCTGTTTGTCATCGCAGCTTCCCGAGAAAGAAATCATTA
GATACTCATCGCTTAACGCATAGTGATGTGAAGCCTTATGCATGTGACTT
TCCCGGGTGTACAAGAAAATTCAAACAGAGTGGTCAACTTAAGACACATT
TGCGTTTACATACAGGAGAAAAACCTTTTCAGTGTACTTTTCCAGATTGT
GAATCAACATTTACACATGCAAATCGAAAATGCACTATGCATCCTGACCA
TCCACTACGTAGAATTTCAACCGAATCAATTTCAGAGGAGTTGCTAAAAA
ACATTACAAGTGAGGAGACAAacgaaaatattgataaaattaaaatttgg
tttgaaaaacatttttctaacaaagacaatacaaatgATAATAAAGAAAA
CATCCCACCAAATTCCATACAACCAATAATCAAAGCAGAACCTATGAACA
ATGAAATTTTAGAATGTGAAAATTATACTGaggaaaataacaaaagacta
tTGTCAGCAGTTGCTTTGGTTGAATTACGTGATCAAATGAAAAATCCTTC
AAACAAGAAAGATAATTTTTCTCAACTGTTCACGAGTCACGAATTTTGAA
CGCGTTAGAAAttcatattttatttatttgtatttattATTGCCGTATAG
CCAACATTTTTCCTGGctaattctgaaaaatttgtttaACAGGTGATTCC
TCCaagttttttaccttttttgtgCTTTACACAAGGTTACTTTCTATATA
TCTTTGATAACTTGGTGTAGTAAGAGATGTGCCGACAACTAGGTATTTGT
GTTTTTGTGTTAATTATTGTTATAAGCCTTGGGATATTATTCAGGGTGGC
TCCAGTGTTTTTCAAagacttcatttttctttatttacaatataatttat
attttgtattttatgtATATATTAGTAGTTAGCTGAAGAAATTTATtaac
aaaattctaaaaatcagGATTTATATTTCTTCCAACTAAACTTTCGACCA
AAAGACCCATAAGGAATTGTTGAGTAGATAACT Run BLAST on NCBI protein sequence of TCONS_00005920-protein >TCONS_00005920-protein ID=TCONS_00005920-protein|Name=TCONS_00005920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MDENRCSVIQGYTTADFNTNSKSSCKENSAPIEQTHQQQLHHMANGFVPS
FAIHQAQILPPPFPPNLSYPPKLYKESEYVRMFPPIGFSTVPLTIQAPLL
SHHKLAPPVLAVNGHINQENRAEPTSKKQKYDFSIKALTAKDENKPTRKP
LGLSNSANIQNNPMFMFQQLPPSEVCNKSNNKENVGQSPLSIKNRGRPSA
DVIELLKQRSIQSPHRYSCSVCHRSFPRKKSLDTHRLTHSDVKPYACDFP
GCTRKFKQSGQLKTHLRLHTGEKPFQCTFPDCESTFTHANRKCTMHPDHP
LRRISTESISEELLKNITSEETNENIDKIKIWFEKHFSNKDNTNDNKENI
PPNSIQPIIKAEPMNNEILECENYTEENNKRLLSAVALVELRDQMKNPSN
KKDNFSQLFTSHEF Run BLAST on NCBI transcript from alignment at sc0000061:430947..434641- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005920 ID=TCONS_00005920|Name=TCONS_00005920|organism=Clytia hemisphaerica|type=transcript|length=3695bp|location=Sequence derived from alignment at sc0000061:430947..434641- (Clytia hemisphaerica)
ACAACATCTCAGTTACTTCCTTGATTAGCGCCAATTTTTAAAGTGTTATT
GTTTTGGTGTCCTTTTAAATTTGATGTCGTCAAACAATGATCAAAATCAT
TAAAGTGGCGGTAGAAAGTTCTCTTTAAATTCGGCAGCGATCAAGGCAGG
AAGGATGGATGAAAACAGATGCTCTGTCATTCAAGGCTACACAACAGCAG
ATTTTAATACAAATTCAAAGAGTAGCTGTAAAGAAAACAGTGCTCCAATC
GAACAAACGCATCAACAACAACTTCATCATATGGCGAATGGCTTTGTACC
CTCTTTTGCAATACATCAAGCTCAGATTTTACCTCCACCTTTTCCACCAA
ATTTGTCATATCCTCCAAAGCTCTACAAAGAAAGTGAGTATGTCAGAATG
TTTCCACCTATTGGCTTCAGTACAGTTCCTTTGACGATACAAGCTCCATT
GCTAAGCCATCATAAGTTAGCTCCTCCTGTGCTTGCTGTAAACGGACACA
TAAACCAGGAGAATCGAGCTGAGCCAACTTCAAAAAAACAAAAATATGAC
TTTTCCATCAAAGCACTGACAGCTAAGGATGAAAATAAACCAACTCGCAA
ACCATTGGGCCTAAGCAACTCAGCAAATATACAAAATAATCCTATGTTTA
TGTTTCAACAACTACCACCATCAGAAGTCTGCAACAAATCTAACAACAAA
GAAAATGGTAAGGGTTTCTTTTAAATGGGGGATTCCATCAAAGCTCAAAT
GACTTTAAACTTGCATTTATCCCAATTTTTTTGAGGGGCTGAACAGTTTA
GATGGATGAGCCTTATTTTGTTGGGTGCACGATGCTTGAAAATTGAAAAA
ATATACGTCACTTTTTGATAGCAAAAACTTTTAAAGTCTGAAAGTTTTTA
AGTGAAAACTAGGATTTTTCATTGAACTGCAATCGTTAGCAAATTTACTT
GATCTTCTTCAGTATAGACCTAACTGTTCATACAAAAATTACGGAAAACG
CGTATTTGGACTTTGTACCCTATGCTGCACTCAAGCACTTAAGCCAAAGT
CCCGCAAAGGCGGGACAAAAATCAGTTTTTTGAAGTTTGCAAAAAAACGC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTGTAAGTG
CACTTTATAGTTTTGATTCCCATTGAAGAATCATATTCTGGTTTTCATGT
TATTAGATGCTGCTTTAGAGCTTTAGGTCTACACTGTTCTTAAAAATTTG
TATTGCATGAATATCAAAATATTTTTGTGTGAATGTATGAATTTCCTGGA
AAGCTGACGAGGGGGTGCCGCCCAACTTTCAACCCTTGGACCCTTACCAG
GACTAAAAAGGAGAAAACAAGGAAAATTTTGTGAATTTACGACCCTTATT
GGGACAAATTTGACCAAATTTCAATTTTTCCGAGGGTAAAAAAATGTAAT
TTTCCTATTTTTCCAACCCTTAGTGGGACAGAAATTTGATTTTCTGATTT
TTCTGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGTGCCTGATTGAA
ATTGCTCAATTCTCCATCAGAGAATTCTCATCAATTGCCAGAATTCTGTC
TAAATTCTTGTCAAATTCTGCCACTCTGTTTGAAAAAAAGGCTGATTCCA
CTCCCCTGCCAACCATGAAACCCTTCCTGTTAGGTTAAAACAGTTTTATT
CAGACACTAAACTCTCTAGATAAAATGATTGATGATTGATTATTGAGGTT
GACCACTGTACCCTAAACTTGACTAATGTCAACTTCTATCTTATTCCATC
ACCATTCTCTGGAAATAGGAAATAAGAAGGTTGGAATGGATGATTGAAAC
TATATTTCTTTGCTTAGCATTCAGAAAAATCTTTCTTCAATCAGCGATTG
CAACCTATTATTCCTTTAAGAAACCTCTAAAGAAGTGTGACAAAATTAGA
TAGCGAATGTGGGCATTAGACCACAGTGCCTTAAAGAACTTAGGAAAAGA
AATATACTCTTCCTTGCCATTTTAACTTGAAATAAAATAAACTTAGTATA
TTCTCTTTATATTTTTCAGTTGGACAATCACCTTTATCCATTAAAAATCG
TGGGAGACCAAGTGCAGATGTTATCGAATTACTTAAACAGAGATCCATTC
AAAGTCCTCACCGGTATAGCTGTTCTGTTTGTCATCGCAGCTTCCCGAGA
AAGAAATCATTAGATACTCATCGCTTAACGCATAGTGATGTGAAGCCTTA
TGCATGTGACTTTCCCGGGTGTACAAGAAAATTCAAACAGAGTGGTCAAC
TTAAGACACATTTGCGTTTACATACAGGAGAAAAACCTTTTCAGTGTACT
TTTCCAGATTGTGAATCAACATTTACACATGCAAATCGAAAATGCACTAT
GCATCCTGACCATCCACTACGTAGAATTTCAACCGAATCAATTTCAGAGG
AGTTGCTAAAAAACATTACAAGTGAGGAGACAAACGAAAATATTGATAAA
ATTAAAATTTGGTTTGAAAAACATTTTTCTAACAAAGACAATACAAATGA
TAATAAAGAAAACATCCCACCAAATTCCATACAACCAATAATCAAAGCAG
AACCTATGAACAATGAAATTTTAGAATGTGAAAATTATACTGAGGAAAAT
AACAAAAGACTATTGTCAGCAGTTGCTTTGGTTGAATTACGTGATCAAAT
GAAAAATCCTTCAAACAAGAAAGATAATTTTTCTCAACTGTTCACGAGTC
ACGAATTTTGAACGCGTTAGAAATTCATATTTTATTTATTTGTATTTATT
ATTGCCGTATAGCCAACATTTTTCCTGGCTAATTCTGAAAAATTTGTTTA
ACAGGTGATTCCTCCAAGTTTTTTACCTTTTTTGTGCTTTACACAAGGTT
ACTTTCTATATATCTTTGATAACTTGGTGTAGTAAGAGATGTGCCGACAA
CTAGGTATTTGTGTTTTTGTGTTAATTATTGTTATAAGCCTTGGGATATT
ATTCAGGGTGGCTCCAGTGTTTTTCAAAGACTTCATTTTTCTTTATTTAC
AATATAATTTATATTTTGTATTTTATGTATATATTAGTAGTTAGCTGAAG
AAATTTATTAACAAAATTCTAAAAATCAGGATTTATATTTCTTCCAACTA
AACTTTCGACCAAAAGACCCATAAGGAATTGTTGAGTAGATAACT Coding sequence (CDS) from alignment at sc0000061:430947..434641- >TCONS_00005920 ID=TCONS_00005920|Name=TCONS_00005920|organism=Clytia hemisphaerica|type=CDS|length=2490bp|location=Sequence derived from alignment at sc0000061:430947..434641- (Clytia hemisphaerica)
TTGGACAATCACCTTTATCCATTAAAAATCGTGGGAGACCAAGTGCAGAT
GTTATCGAATTACTTAAACAGAGATCCATTCAAAGTCCTCACCGGTATAG
CTGTTCTGTTTGTCATCGCAGCTTCCCGAGAAAGAAATCATTAGATACTC
ATCGCTTAACGCATAGTGATGTGAAGCCTTATGCATGTGACTTTCCCGGG
TGTACAAGAAAATTCAAACAGAGTGGTCAACTTAAGACACATTTGCGTTT
ACATACAGGAGAAAAACCTTTTCAGTGTACTTTTCCAGATTGTGAATCAA
CATTTACACATGCAAATCGAAAATGCACTATGCATCCTGACCATCCACTA
CGTAGAATTTCAACCGAATCAATTTCAGAGGAGTTGCTAAAAAACATTAC
AAGTGAGGAGACAAACGAAAATATTGATAAAATTAAAATTTGGTTTGAAA
AACATTTTTCTAACAAAGACAATACAAATGATAATAAAGAAAACATCCCA
CCAAATTCCATACAACCAATAATCAAAGCAGAACCTATGAACAATGAAAT
TTTAGAATGTGAAAATTATACTGAGGAAAATAACAAAAGACTATTGTCAG
CAGTTGCTTTGGTTGAATTACGTGATCAAATGAAAAATCCTTCAAACAAG
AAAGATAATTTTTCTCAACTGTTCACGAGTCACGAATTTTGAATGGATGA
AAACAGATGCTCTGTCATTCAAGGCTACACAACAGCAGATTTTAATACAA
ATTCAAAGAGTAGCTGTAAAGAAAACAGTGCTCCAATCGAACAAACGCAT
CAACAACAACTTCATCATATGGCGAATGGCTTTGTACCCTCTTTTGCAAT
ACATCAAGCTCAGATTTTACCTCCACCTTTTCCACCAAATTTGTCATATC
CTCCAAAGCTCTACAAAGAAAGTGAGTATGTCAGAATGTTTCCACCTATT
GGCTTCAGTACAGTTCCTTTGACGATACAAGCTCCATTGCTAAGCCATCA
TAAGTTAGCTCCTCCTGTGCTTGCTGTAAACGGACACATAAACCAGGAGA
ATCGAGCTGAGCCAACTTCAAAAAAACAAAAATATGACTTTTCCATCAAA
GCACTGACAGCTAAGGATGAAAATAAACCAACTCGCAAACCATTGGGCCT
AAGCAACTCAGCAAATATACAAAATAATCCTATGTTTATGTTTCAACAAC
TACCACCATCAGAAGTCTGCAACAAATCTAACAACAAAGAAAATGTTGGA
CAATCACCTTTATCCATTAAAAATCGTGGGAGACCAAGTGCAGATGTTAT
CGAATTACTTAAACAGAGATCCATTCAAAGTCCTCACCGGTATAGCTGTT
CTGTTTGTCATCGCAGCTTCCCGAGAAAGAAATCATTAGATACTCATCGC
TTAACGCATAGTGATGTGAAGCCTTATGCATGTGACTTTCCCGGGTGTAC
AAGAAAATTCAAACAGAGTGGTCAACTTAAGACACATTTGCGTTTACATA
CAGGAGAAAAACCTTTTCAGTGTACTTTTCCAGATTGTGAATCAACATTT
ACACATGCAAATCGAAAATGCACTATGCATCCTGACCATCCACTACGTAG
AATTTCAACCGAATCAATTTCAGAGGAGTTGCTAAAAAACATTACAAGTG
AGGAGACAAACGAAAATATTGATAAAATTAAAATTTGGTTTGAAAAACAT
TTTTCTAACAAAGACAATACAAATGATAATAAAGAAAACATCCCACCAAA
TTCCATACAACCAATAATCAAAGCAGAACCTATGAACAATGAAATTTTAG
AATGTGAAAATTATACTGAGGAAAATAACAAAAGACTATTGTCAGCAGTT
GCTTTGGTTGAATTACGTGATCAAATGAAAAATCCTTCAAACAAGAAAGA
TAATTTTTCTCAACTGTTCACGAGTCACGAATTTTGAATGGATGAAAACA
GATGCTCTGTCATTCAAGGCTACACAACAGCAGATTTTAATACAAATTCA
AAGAGTAGCTGTAAAGAAAACAGTGCTCCAATCGAACAAACGCATCAACA
ACAACTTCATCATATGGCGAATGGCTTTGTACCCTCTTTTGCAATACATC
AAGCTCAGATTTTACCTCCACCTTTTCCACCAAATTTGTCATATCCTCCA
AAGCTCTACAAAGAAAGTGAGTATGTCAGAATGTTTCCACCTATTGGCTT
CAGTACAGTTCCTTTGACGATACAAGCTCCATTGCTAAGCCATCATAAGT
TAGCTCCTCCTGTGCTTGCTGTAAACGGACACATAAACCAGGAGAATCGA
GCTGAGCCAACTTCAAAAAAACAAAAATATGACTTTTCCATCAAAGCACT
GACAGCTAAGGATGAAAATAAACCAACTCGCAAACCATTGGGCCTAAGCA
ACTCAGCAAATATACAAAATAATCCTATGTTTATGTTTCAACAACTACCA
CCATCAGAAGTCTGCAACAAATCTAACAACAAAGAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005920-exon-sc0000061-1575043694:433935..434641 | TCONS_00005920-exon-sc0000061-1575043694:433935..434641 | Clytia hemisphaerica | exon |
| TCONS_00005920-exon-sc0000061-1575043694:430947..432072 | TCONS_00005920-exon-sc0000061-1575043694:430947..432072 | Clytia hemisphaerica | exon |
| TCONS_00005920-exon-sc0000061-1510915933:433935..434641 | TCONS_00005920-exon-sc0000061-1510915933:433935..434641 | Clytia hemisphaerica | exon |
| TCONS_00005920-exon-sc0000061-1510915933:430947..432072 | TCONS_00005920-exon-sc0000061-1510915933:430947..432072 | Clytia hemisphaerica | exon |
| TCONS_00005920-exon-sc0000061-1491911889:433935..434641 | TCONS_00005920-exon-sc0000061-1491911889:433935..434641 | Clytia hemisphaerica | exon |
| TCONS_00005920-exon-sc0000061-1491911889:430947..432072 | TCONS_00005920-exon-sc0000061-1491911889:430947..432072 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:430947..434641 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00005920 vs. Swiss-Prot (Human)
Match: ZN367 (Zinc finger protein 367 OS=Homo sapiens GN=ZNF367 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 5.886e-34 Identity = 75/208 (36.06%), Postives = 109/208 (52.40%), Query Frame = 2
Query: 737 RGRPSADVIELLKQRSIQSPHRYSCSVCHRSFPRKKSLDTHRLTHSDVKPYACDFPGCTRKFKQSGQLKTHLRLHTGEKPFQCTFPDCESTFTHANRKCTMHPDHPLRRISTESISEELLKNITSEETNENIDKIKIWFEKHFSNKDNTN-----------DNKENIPPNSIQPIIKAEPMNNEILECENYTEENNKRLLSAVALVEL 1327
RGRP AD + L S R C++C+R FPR+KSL H+ TH+ +PY CD+P C + F QSGQLKTH RLHTGEKPF C+ C S FTHANR C P HP R+ E ++ L K+ ++ W +++ ++ D ++ P +Q ++ ++E + +E +RL A+AL+EL
Sbjct: 145 RGRPRADTVRDLINEGEHSSSRIRCNICNRVFPREKSLQAHKRTHTGERPYLCDYPDCGKAFVQSGQLKTHQRLHTGEKPFVCSENGCLSRFTHANRHC---PKHPYARLKREEPTDTLSKHQAADNK-----AAAEWLARYWEMREQRTPTLKGKLVQKADQEQQDPLEYLQ----SDEEDDEKRGAQRRLQEQRERLHGALALIEL 340
The following BLAST results are available for this feature:
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