XLOC_003371 (gene) - C. hemisphaerica

Overview
NameXLOC_003371
Unique NameXLOC_003371
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000061:430947..434647-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003371 ID=XLOC_003371|Name=XLOC_003371|organism=Clytia hemisphaerica|type=gene|length=3701bp|location=Sequence derived from alignment at sc0000061:430947..434647- (Clytia hemisphaerica)
CGTAGTACAACATCTCAGTTACTTCCTTGATTAGCGCCAATTTTTAAAGT
GTTATTGTTTTGGTGTCCTTTTAAATTTGATGTCGTCAAACAATGATCAA
AATCATTAAAGTGGCGGTAGAAAGTTCTCTTTAAATTCGGCAGCGATCAA
GGCAGGAAGGATGGATGAAAACAGATGCTCTGTCATTCAAGGCTACACAA
CAGCAGATTTTAATACAAATTCAAAGAGTAGCTGTAAAGAAAACAGTGCT
CCAATCGAACAAACGCATCAACAACAACTTCATCATATGGCGAATGGCTT
TGTACCCTCTTTTGCAATACATCAAGCTCAGATTTTACCTCCACCTTTTC
CACCAAATTTGTCATATCCTCCAAAGCTCTACAAAGAAAGTGAGTATGTC
AGAATGTTTCCACCTATTGGCTTCAGTACAGTTCCTTTGACGATACAAGC
TCCATTGCTAAGCCATCATAAGTTAGCTCCTCCTGTGCTTGCTGTAAACG
GACACATAAACCAGGAGAATCGAGCTGAGCCAACTTCAAAAAAACAAAAA
TATGACTTTTCCATCAAAGCACTGACAGCTAAGGATGAAAATAAACCAAC
TCGCAAACCATTGGGCCTAAGCAACTCAGCAAATATACAAAATAATCCTA
TGTTTATGTTTCAACAACTACCACCATCAGAAGTCTGCAACAAATCTAAC
AACAAAGAAAATGGTAAGGGTTTCTTTTAAATGGGGGATTCCATCAAAGC
TCAAATGACTTTAAACTTGCATTTATCCCAATTTTTTTGAGGGGCTGAAC
AGTTTAGATGGATGAGCCTTATTTTGTTGGGTGCACGATGCTTGAAAATT
GAAAAAATATACGTCACTTTTTGATAGCAAAAACTTTTAAAGTCTGAAAG
TTTTTAAGTGAAAACTAGGATTTTTCATTGAACTGCAATCGTTAGCAAAT
TTACTTGATCTTCTTCAGTATAGACCTAACTGTTCATACAAAAATTACGG
AAAACGCGTATTTGGACTTTGTACCCTATGCTGCACTCAAGCACTTAAGC
CAAAGTCCCGCAAAGGCGGGACAAAAATCAGTTTTTTGAAGTTTGCAAAA
AAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTG
TAAGTGCACTTTATAGTTTTGATTCCCATTGAAGAATCATATTCTGGTTT
TCATGTTATTAGATGCTGCTTTAGAGCTTTAGGTCTACACTGTTCTTAAA
AATTTGTATTGCATGAATATCAAAATATTTTTGTGTGAATGTATGAATTT
CCTGGAAAGCTGACGAGGGGGTGCCGCCCAACTTTCAACCCTTGGACCCT
TACCAGGACTAAAAAGGAGAAAACAAGGAAAATTTTGTGAATTTACGACC
CTTATTGGGACAAATTTGACCAAATTTCAATTTTTCCGAGGGTAAAAAAA
TGTAATTTTCCTATTTTTCCAACCCTTAGTGGGACAGAAATTTGATTTTC
TGATTTTTCTGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGTGCCTG
ATTGAAATTGCTCAATTCTCCATCAGAGAATTCTCATCAATTGCCAGAAT
TCTGTCTAAATTCTTGTCAAATTCTGCCACTCTGTTTGAAAAAAAGGCTG
ATTCCACTCCCCTGCCAACCATGAAACCCTTCCTGTTAGGTTAAAACAGT
TTTATTCAGACACTAAACTCTCTAGATAAAATGATTGATGATTGATTATT
GAGGTTGACCACTGTACCCTAAACTTGACTAATGTCAACTTCTATCTTAT
TCCATCACCATTCTCTGGAAATAGGAAATAAGAAGGTTGGAATGGATGAT
TGAAACTATATTTCTTTGCTTAGCATTCAGAAAAATCTTTCTTCAATCAG
CGATTGCAACCTATTATTCCTTTAAGAAACCTCTAAAGAAGTGTGACAAA
ATTAGATAGCGAATGTGGGCATTAGACCACAGTGCCTTAAAGAACTTAGG
AAAAGAAATATACTCTTCCTTGCCATTTTAACTTGAAATAAAATAAACTT
AGTATATTCTCTTTATATTTTTCAGTTGGACAATCACCTTTATCCATTAA
AAATCGTGGGAGACCAAGTGCAGATGTTATCGAATTACTTAAACAGAGAT
CCATTCAAAGTCCTCACCGGTATAGCTGTTCTGTTTGTCATCGCAGCTTC
CCGAGAAAGAAATCATTAGATACTCATCGCTTAACGCATAGTGATGTGAA
GCCTTATGCATGTGACTTTCCCGGGTGTACAAGAAAATTCAAACAGAGTG
GTCAACTTAAGACACATTTGCGTTTACATACAGGAGAAAAACCTTTTCAG
TGTACTTTTCCAGATTGTGAATCAACATTTACACATGCAAATCGAAAATG
CACTATGCATCCTGACCATCCACTACGTAGAATTTCAACCGAATCAATTT
CAGAGGAGTTGCTAAAAAACATTACAAGTGAGGAGACAAACGAAAATATT
GATAAAATTAAAATTTGGTTTGAAAAACATTTTTCTAACAAAGACAATAC
AAATGATAATAAAGAAAACATCCCACCAAATTCCATACAACCAATAATCA
AAGCAGAACCTATGAACAATGAAATTTTAGAATGTGAAAATTATACTGAG
GAAAATAACAAAAGACTATTGTCAGCAGTTGCTTTGGTTGAATTACGTGA
TCAAATGAAAAATCCTTCAAACAAGAAAGATAATTTTTCTCAACTGTTCA
CGAGTCACGAATTTTGAACGCGTTAGAAATTCATATTTTATTTATTTGTA
TTTATTATTGCCGTATAGCCAACATTTTTCCTGGCTAATTCTGAAAAATT
TGTTTAACAGGTGATTCCTCCAAGTTTTTTACCTTTTTTGTGCTTTACAC
AAGGTTACTTTCTATATATCTTTGATAACTTGGTGTAGTAAGAGATGTGC
CGACAACTAGGTATTTGTGTTTTTGTGTTAATTATTGTTATAAGCCTTGG
GATATTATTCAGGGTGGCTCCAGTGTTTTTCAAAGACTTCATTTTTCTTT
ATTTACAATATAATTTATATTTTGTATTTTATGTATATATTAGTAGTTAG
CTGAAGAAATTTATTAACAAAATTCTAAAAATCAGGATTTATATTTCTTC
CAACTAAACTTTCGACCAAAAGACCCATAAGGAATTGTTGAGTAGATAAC
T
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005921TCONS_00005921Clytia hemisphaericatranscript
TCONS_00005920TCONS_00005920Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005920-proteinTCONS_00005920-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:430947..434647 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.87	60.59	29.44	24.77	32.02	22.64	13.41	14.23	8.06	9.1	6.55	6.8	4.38	4.47	5.37	5.89	10.04	9.66	0.65	0.87	6.88	6.69	25.29	22.34	6.4	7.62	4.66	3.14	12.22	12.85