|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005921 ID=TCONS_00005921|Name=TCONS_00005921|organism=Clytia hemisphaerica|type=transcript|length=1515bp
CGTAGTACAACATCTCAGTTACTTCCTTGATTAGCGCCAatttttaaagt
gttattgTTTTGGTGTCCTTTTAAATTTGATGTCGTCAAACAATGATCAA
AATCATTAAAGTGGCGGTAGAAAGTTCTCTTTAAATTCGGCAGCGATCAA
GGCAGGAAGGATGGATGAAAACAGATGCTCTGTCATTCAAGGCTACACAA
CAGCAGATTTTAATACAAATTCAAAGAGTAGCTGTAAAGAAAACAGTGCT
CCAATCGAACAAACGCATCAACAACAACTTCATCATATGGCGAATGGCTT
TGTACCCTCTTTTGCAATACATCAAGCTCAGATTTTACCTCCACCTTTTC
CACCAAATTTGTCATATCCTCCAAAGCTCTACAAAGAAATTGGACAATCA
CCTTTATCCATTAAAAATCGTGGGAGACCAAGTGCAGATGTTATCGAATT
ACTTAAACAGAGATCCATTCAAAGTCCTCACCGGTATAGCTGTTCTGTTT
GTCATCGCAGCTTCCCGAGAAAGAAATCATTAGATACTCATCGCTTAACG
CATAGTGATGTGAAGCCTTATGCATGTGACTTTCCCGGGTGTACAAGAAA
ATTCAAACAGAGTGGTCAACTTAAGACACATTTGCGTTTACATACAGGAG
AAAAACCTTTTCAGTGTACTTTTCCAGATTGTGAATCAACATTTACACAT
GCAAATCGAAAATGCACTATGCATCCTGACCATCCACTACGTAGAATTTC
AACCGAATCAATTTCAGAGGAGTTGCTAAAAAACATTACAAGTGAGGAGA
CAAacgaaaatattgataaaattaaaatttggtttgaaaaacatttttct
aacaaagacaatacaaatgATAATAAAGAAAACATCCCACCAAATTCCAT
ACAACCAATAATCAAAGCAGAACCTATGAACAATGAAATTTTAGAATGTG
AAAATTATACTGaggaaaataacaaaagactatTGTCAGCAGTTGCTTTG
GTTGAATTACGTGATCAAATGAAAAATCCTTCAAACAAGAAAGATAATTT
TTCTCAACTGTTCACGAGTCACGAATTTTGAACGCGTTAGAAAttcatat
tttatttatttgtatttattATTGCCGTATAGCCAACATTTTTCCTGGct
aattctgaaaaatttgtttaACAGGTGATTCCTCCaagttttttaccttt
tttgtgCTTTACACAAGGTTACTTTCTATATATCTTTGATAACTTGGTGT
AGTAAGAGATGTGCCGACAACTAGGTATTTGTGTTTTTGTGTTAATTATT
GTTATAAGCCTTGGGATATTATTCAGGGTGGCTCCAGTGTTTTTCAAaga
cttcatttttctttatttacaatataatttatattttgtattttatgtAT
ATATTAGTAGTTAGCTGAAGAAATTTATtaacaaaattctaaaaatcagG
ATTTATATTTCTTCCAACTAAACTTTCGACCAAAAGACCCATAAGGAATT
GTTGAGTAGATAACT Run BLAST on NCBI transcript from alignment at sc0000061:430947..434647- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005921 ID=TCONS_00005921|Name=TCONS_00005921|organism=Clytia hemisphaerica|type=transcript|length=3701bp|location=Sequence derived from alignment at sc0000061:430947..434647- (Clytia hemisphaerica)
CGTAGTACAACATCTCAGTTACTTCCTTGATTAGCGCCAATTTTTAAAGT
GTTATTGTTTTGGTGTCCTTTTAAATTTGATGTCGTCAAACAATGATCAA
AATCATTAAAGTGGCGGTAGAAAGTTCTCTTTAAATTCGGCAGCGATCAA
GGCAGGAAGGATGGATGAAAACAGATGCTCTGTCATTCAAGGCTACACAA
CAGCAGATTTTAATACAAATTCAAAGAGTAGCTGTAAAGAAAACAGTGCT
CCAATCGAACAAACGCATCAACAACAACTTCATCATATGGCGAATGGCTT
TGTACCCTCTTTTGCAATACATCAAGCTCAGATTTTACCTCCACCTTTTC
CACCAAATTTGTCATATCCTCCAAAGCTCTACAAAGAAAGTGAGTATGTC
AGAATGTTTCCACCTATTGGCTTCAGTACAGTTCCTTTGACGATACAAGC
TCCATTGCTAAGCCATCATAAGTTAGCTCCTCCTGTGCTTGCTGTAAACG
GACACATAAACCAGGAGAATCGAGCTGAGCCAACTTCAAAAAAACAAAAA
TATGACTTTTCCATCAAAGCACTGACAGCTAAGGATGAAAATAAACCAAC
TCGCAAACCATTGGGCCTAAGCAACTCAGCAAATATACAAAATAATCCTA
TGTTTATGTTTCAACAACTACCACCATCAGAAGTCTGCAACAAATCTAAC
AACAAAGAAAATGGTAAGGGTTTCTTTTAAATGGGGGATTCCATCAAAGC
TCAAATGACTTTAAACTTGCATTTATCCCAATTTTTTTGAGGGGCTGAAC
AGTTTAGATGGATGAGCCTTATTTTGTTGGGTGCACGATGCTTGAAAATT
GAAAAAATATACGTCACTTTTTGATAGCAAAAACTTTTAAAGTCTGAAAG
TTTTTAAGTGAAAACTAGGATTTTTCATTGAACTGCAATCGTTAGCAAAT
TTACTTGATCTTCTTCAGTATAGACCTAACTGTTCATACAAAAATTACGG
AAAACGCGTATTTGGACTTTGTACCCTATGCTGCACTCAAGCACTTAAGC
CAAAGTCCCGCAAAGGCGGGACAAAAATCAGTTTTTTGAAGTTTGCAAAA
AAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTG
TAAGTGCACTTTATAGTTTTGATTCCCATTGAAGAATCATATTCTGGTTT
TCATGTTATTAGATGCTGCTTTAGAGCTTTAGGTCTACACTGTTCTTAAA
AATTTGTATTGCATGAATATCAAAATATTTTTGTGTGAATGTATGAATTT
CCTGGAAAGCTGACGAGGGGGTGCCGCCCAACTTTCAACCCTTGGACCCT
TACCAGGACTAAAAAGGAGAAAACAAGGAAAATTTTGTGAATTTACGACC
CTTATTGGGACAAATTTGACCAAATTTCAATTTTTCCGAGGGTAAAAAAA
TGTAATTTTCCTATTTTTCCAACCCTTAGTGGGACAGAAATTTGATTTTC
TGATTTTTCTGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGTGCCTG
ATTGAAATTGCTCAATTCTCCATCAGAGAATTCTCATCAATTGCCAGAAT
TCTGTCTAAATTCTTGTCAAATTCTGCCACTCTGTTTGAAAAAAAGGCTG
ATTCCACTCCCCTGCCAACCATGAAACCCTTCCTGTTAGGTTAAAACAGT
TTTATTCAGACACTAAACTCTCTAGATAAAATGATTGATGATTGATTATT
GAGGTTGACCACTGTACCCTAAACTTGACTAATGTCAACTTCTATCTTAT
TCCATCACCATTCTCTGGAAATAGGAAATAAGAAGGTTGGAATGGATGAT
TGAAACTATATTTCTTTGCTTAGCATTCAGAAAAATCTTTCTTCAATCAG
CGATTGCAACCTATTATTCCTTTAAGAAACCTCTAAAGAAGTGTGACAAA
ATTAGATAGCGAATGTGGGCATTAGACCACAGTGCCTTAAAGAACTTAGG
AAAAGAAATATACTCTTCCTTGCCATTTTAACTTGAAATAAAATAAACTT
AGTATATTCTCTTTATATTTTTCAGTTGGACAATCACCTTTATCCATTAA
AAATCGTGGGAGACCAAGTGCAGATGTTATCGAATTACTTAAACAGAGAT
CCATTCAAAGTCCTCACCGGTATAGCTGTTCTGTTTGTCATCGCAGCTTC
CCGAGAAAGAAATCATTAGATACTCATCGCTTAACGCATAGTGATGTGAA
GCCTTATGCATGTGACTTTCCCGGGTGTACAAGAAAATTCAAACAGAGTG
GTCAACTTAAGACACATTTGCGTTTACATACAGGAGAAAAACCTTTTCAG
TGTACTTTTCCAGATTGTGAATCAACATTTACACATGCAAATCGAAAATG
CACTATGCATCCTGACCATCCACTACGTAGAATTTCAACCGAATCAATTT
CAGAGGAGTTGCTAAAAAACATTACAAGTGAGGAGACAAACGAAAATATT
GATAAAATTAAAATTTGGTTTGAAAAACATTTTTCTAACAAAGACAATAC
AAATGATAATAAAGAAAACATCCCACCAAATTCCATACAACCAATAATCA
AAGCAGAACCTATGAACAATGAAATTTTAGAATGTGAAAATTATACTGAG
GAAAATAACAAAAGACTATTGTCAGCAGTTGCTTTGGTTGAATTACGTGA
TCAAATGAAAAATCCTTCAAACAAGAAAGATAATTTTTCTCAACTGTTCA
CGAGTCACGAATTTTGAACGCGTTAGAAATTCATATTTTATTTATTTGTA
TTTATTATTGCCGTATAGCCAACATTTTTCCTGGCTAATTCTGAAAAATT
TGTTTAACAGGTGATTCCTCCAAGTTTTTTACCTTTTTTGTGCTTTACAC
AAGGTTACTTTCTATATATCTTTGATAACTTGGTGTAGTAAGAGATGTGC
CGACAACTAGGTATTTGTGTTTTTGTGTTAATTATTGTTATAAGCCTTGG
GATATTATTCAGGGTGGCTCCAGTGTTTTTCAAAGACTTCATTTTTCTTT
ATTTACAATATAATTTATATTTTGTATTTTATGTATATATTAGTAGTTAG
CTGAAGAAATTTATTAACAAAATTCTAAAAATCAGGATTTATATTTCTTC
CAACTAAACTTTCGACCAAAAGACCCATAAGGAATTGTTGAGTAGATAAC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005921-exon-sc0000061-1575043694:434259..434647 | TCONS_00005921-exon-sc0000061-1575043694:434259..434647 | Clytia hemisphaerica | exon |
| TCONS_00005921-exon-sc0000061-1575043694:430947..432072 | TCONS_00005921-exon-sc0000061-1575043694:430947..432072 | Clytia hemisphaerica | exon |
| TCONS_00005921-exon-sc0000061-1510915933:434259..434647 | TCONS_00005921-exon-sc0000061-1510915933:434259..434647 | Clytia hemisphaerica | exon |
| TCONS_00005921-exon-sc0000061-1510915933:430947..432072 | TCONS_00005921-exon-sc0000061-1510915933:430947..432072 | Clytia hemisphaerica | exon |
| TCONS_00005921-exon-sc0000061-1491911889:434259..434647 | TCONS_00005921-exon-sc0000061-1491911889:434259..434647 | Clytia hemisphaerica | exon |
| TCONS_00005921-exon-sc0000061-1491911889:430947..432072 | TCONS_00005921-exon-sc0000061-1491911889:430947..432072 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:430947..434647 - |
Blast
BLAST of TCONS_00005921 vs. Swiss-Prot (Human)
Match: ZN367 (Zinc finger protein 367 OS=Homo sapiens GN=ZNF367 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 5.085e-34 Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = 2
Query: 419 RGRPSADVIELLKQRSIQSPHRYSCSVCHRSFPRKKSLDTHRLTHSDVKPYACDFPGCTRKFKQSGQLKTHLRLHTGEKPFQCTFPDCESTFTHANRKCTMHPDHPLRRISTESISEELLKNITSEETNENIDKIKIWFEKHFSNKDNTN-----------DNKENIPPNSIQPIIKAEPMNNEILECENYTEENNKRLLSAVALVELRDQMKNP 1030
RGRP AD + L S R C++C+R FPR+KSL H+ TH+ +PY CD+P C + F QSGQLKTH RLHTGEKPF C+ C S FTHANR C P HP R+ E ++ L K+ ++ W +++ ++ D ++ P +Q ++ ++E + +E +RL A+AL+EL + P
Sbjct: 145 RGRPRADTVRDLINEGEHSSSRIRCNICNRVFPREKSLQAHKRTHTGERPYLCDYPDCGKAFVQSGQLKTHQRLHTGEKPFVCSENGCLSRFTHANRHC---PKHPYARLKREEPTDTLSKHQAADNK-----AAAEWLARYWEMREQRTPTLKGKLVQKADQEQQDPLEYLQ----SDEEDDEKRGAQRRLQEQRERLHGALALIELANLTGAP 347
The following BLAST results are available for this feature:
|
