TCONS_00004836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004836
Unique NameTCONS_00004836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004836 ID=TCONS_00004836|Name=TCONS_00004836|organism=Clytia hemisphaerica|type=transcript|length=3143bp
GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT
TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA
agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt
attcttacgatattcttaattattggccattttcatcatggacattctta
taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt
tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC
ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA
ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc
atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT
AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG
AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA
TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA
CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC
AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat
aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc
ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG
GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT
TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT
CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga
TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC
CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA
TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt
ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT
ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC
TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA
ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC
TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG
ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG
AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG
TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC
CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC
TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG
ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT
TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT
ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT
CGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAATATCGATTT
AAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCG
ATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTG
GAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAA
CTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATC
TTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCT
GTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttga
agattttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAG
ATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTA
TTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCT
TTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTAT
TCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTA
GACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCAT
GCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGG
ATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATAC
ATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCATGGCGTGATCAATG
TCAAATGGCTTTGAATGATTATTTAACACGTGATCCAACGTTGAACCCTG
GACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTTACAACGCGTGGAT
CCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGATATGCA
TATGGAGACTTTGGTTCGGAATATCTTTCATAGAACCTGATTGGCTGCGG
TCGCCGCGATGATTCAAAATTAGATTCTAAAAAGGATGAATGCatgtaat
aaaacaaaaatgaaaactttcaaataaatCTGGTATCGAGGCTAACCTCT
AGATTATTTAACCGTATTCTGAGGACAAAAAAGACAACCATGTATCAAGA
GCTCTGTGATGACTACATAATTTTTATACGCAGAAATTACTTTATTAATT
AAAactatatataatttttattgatttttaaaataaataaatcttttAAT
CGGGGAAGGACATAAAATTTAATTGATCATCTTTTGTTCAAACCTAGTTC
TAATTTTAGATAAAAGAAGGGTGTATTCCTATGGTCAAATTTGGTGTGCA
ACTCTTTTAATTGTCATCCATGTCAAAGAGAATAACAAAAATA
Run BLAST on NCBI

protein sequence of TCONS_00004836-protein

>TCONS_00004836-protein ID=TCONS_00004836-protein|Name=TCONS_00004836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MNNLLSGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTC
RQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDA
VQHERGPRNSTLRKQRQDKLLAHHHLHQQQPAPRPIRYEEIAVVSSPPLR
KSPKNDSFEDFMDMVLYATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWT
KKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSDDWLLDYLRDYED
RFSEREVRMLRYIADLLADLDQLDLDEREMACLLFIGLFNPYISALTEPG
AVESWRDQCQMALNDYLTRDPTLNPGRFGRMLLIFGRLQRVDPRLIEGVF
FRKEIGDMHMETLVRNIFHRT
Run BLAST on NCBI

transcript from alignment at sc0000049:24391..29246+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004836 ID=TCONS_00004836|Name=TCONS_00004836|organism=Clytia hemisphaerica|type=transcript|length=4856bp|location=Sequence derived from alignment at sc0000049:24391..29246+ (Clytia hemisphaerica)
GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT
TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA
agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt
attcttacgatattcttaattattggccattttcatcatggacattctta
taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt
tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC
ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA
ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc
atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT
AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG
AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA
TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA
CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC
AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat
aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc
ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG
GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT
TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT
CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga
TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC
CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA
TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt
ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT
ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC
TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA
ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC
TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG
ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG
AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG
TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC
CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC
TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG
ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT
TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT
ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT
CGCAAAAACAAGTAAGAAACGTTCCGCCTACAATTATGTTTAGTCACTGT
CTCAATGTTATCAAGTTTGATTGTAATATCTGTAAGGTTGTGATAGCTTT
GCCAAAACTAGGGAAGAATAATGGATTTAGCTATTTTGCGCCTGACCCGA
GGCGTTCAGAAAGTTTTTCCTCGTTTTACTGCGAAAAACTGCAGCTTCTA
CTCTAggtaaaaaaaagacaaaaagaatcCTGGAATTACTGTAGTATTCT
GCAGTAGTGAATGTTACTTTGAACTTTCCCTCGTTGCTATCAGAAATTAC
TTTCAACTATTGTACTATGATTTTACGACAGCAATTGGGGGTTTGTTTGA
GAGATTTTTTGTTAACGTCTGGTGCATCCATACATTCACTAAATTCGACC
AAATAGCTTAAAGGAATTTGTAGAAGATATcattcatctgtcgtccagtc
ccAAATAAAGAAACTATTTTATGTCTCGCATCTGTCTTTTGCTGTTCTAA
GAAATCCGAAAAACCCAATAACGTATCGTTTTAGTAAAAGTTAAAgatct
tttcttttgttaacaCACCTGTCATTAGTCTCTCCAAAAGTCAAGGAAAT
TGATGATTGAGaacaaaattctaaaataatttttatttatttttcataga
aaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACAACGA
GGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCATC
GAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAACATG
AATAAAGATGGTAGGACCTTTTTTAACCTTCTTATTatggttttctttat
tttgttattgttccGCTCAATAATATCTTTCCACTTTCATTTACTGAAAA
ATCgaaactaaaatttgaaataatatgGCTATGACATTTAGTGACTTTTG
AAGAAACGTCATCTATTTCGTTATTTCGAACTCTTATTTTGTATTGTCGA
TTTATTGTTGTTCTCAGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCA
CCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCAC
CAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGT
GTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagatt
ttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTAC
GAAGAGGTTTGTCATTCCGTTCTTTGTTCGAATCTTCGTTTAAATCCTTC
GTTTTCGGACTGTTCCATTCTCACCCAAAATTTAGCCCTAAATCTTAAGA
TTGGAGCCTACTATTTACTCATGTTAAAcaagttttcattatttttcttg
CACAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTC
AAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTA
CGTTGACCAGGTGAGAATCTCAAATTCAATTTGGTCTTCGGTCTCTTTTT
AACAggagaattcatgatatgcaccattgcaatgtcttccacggacccaa
cagctgattggttcaacgtgattttacgtcacttaccaccaatcagctat
tgggtccgtgatgtaatgtcagaagatattgcaatggtgcaaTAATGAAT
ATACTTCAGTCGAACTCCCATAGCTTGATTCTCCATTATTCTTGGATCTG
TGTGTTCGGTGTATTTCTAAGACTTTAAACATTGATTTTTAATAGATTAT
ACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAAT
GGAGAATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAA
GATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCT
ATTGGCTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTT
TGTTATTCATAGGTTTATTTAATCCATGTAAGTAATTTTGTTAGATCCCT
NTTTGGATGAGCGTGAAATGGCTTGTTTGTTATTCATAGGACTATTTAAT
CCATGTAAGTAATTTTGTTAGATCCCTTTCCGTATTTGCGCATTTAGATG
GGTGCAATTATGCCAACCAATGCATTTTCATTCTCCCCATTATCAGTAAC
TTCAGCATGATAGACCCATTTTGAGAAATTATCAACCACGATTCCCGAAT
GAACCGCCTATGGGTGCTATCAATAATGGTGCATGGGTCGCAGCGCCCCT
AGGTCCTTACCAGCGGTATCCAGTTAGAAATTAGTGTGATGGAACGGCAA
ACATTCCTCTGGAATGTCTGACAACATTCATCATATCTTTGTATGTAAAA
GATTacccaattttccaattttcgaaaatcgaataattattttctttttt
ctgcaTTTTAGACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCAT
GGCGTGATCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCA
ACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTT
ACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAA
TTGGTGATATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACC
TGATTGGCTGCGGTCGCCGCGATGATTCAAAATTAGATTCTAAAAAGGAT
GAATGCatgtaataaaacaaaaatgaaaactttcaaataaatCTGGTATC
GAGGCTAACCTCTAGATTATTTAACCGTATTCTGAGGACAAAAAAGACAA
CCATGTATCAAGAGCTCTGTGATGACTACATAATTTTTATACGCAGAAAT
TACTTTATTAATTAAAactatatataatttttattgatttttaaaataaa
taaatcttttAATCGGGGAAGGACATAAAATTTAATTGATCATCTTTTGT
TCAAACCTAGTTCTAATTTTAGATAAAAGAAGGGTGTATTCCTATGGTCA
AATTTGGTGTGCAACTCTTTTAATTGTCATCCATGTCAAAGAGAATAACA
AAAATA

Coding sequence (CDS) from alignment at sc0000049:24391..29246+

>TCONS_00004836 ID=TCONS_00004836|Name=TCONS_00004836|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at sc0000049:24391..29246+ (Clytia hemisphaerica)
ATGAACAATTTATTGTCAGGTCGTCTTTTGGACACTCCCTGCGTGGTTTG
CGGTGATAATTCGTCCGGCAAACATTACGGTGTTTACGCTTGTGATGGCT
GCAGTGGATTCTTCAAAAGAAGCATTCGCAAAAACAAaaaatacACTTGT
CGTCAATCACAACATAATATCGATTTAAATAACAACGAGGGCGGAAATAA
ACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCATCGAAATCAATGTC
GATTTTGTCGATTACAAAAATGTTTGGAAGTTAACATGAATAAAGATGCT
GTCCAGCACGAGCGAGGTCCAAGAAACTCCACCTTACGTAAACAAAGACA
AGACAAACTATTGGCCCATCACCATCTTCACCAACAGCAACCTGCTCCTC
GACCAATCAGATACGAGGAAATTGCTGTCGTGTCCAGCCCTCCTTTGAGA
AAAAGCCCAAAAAATGAtagttttgaagattttatggATATGGTTTTATA
TGCAACTGAGAAATGTTTAACTCCAGATTACGAAGAGAACCGTCACCTAT
CAATGACAGAGGTGACAGCTAAACTATTATTCAAAATCATCCAATGGACC
AAGAAATTACCTCCTTTCGCTTCTCTTTACTACGTTGACCAGATTATACT
GATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAATGGA
GAATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAAGAT
CGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCTATT
GGCTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTTTGT
TATTCATAGGTTTATTTAATCCATACATCAGTGCGTTAACAGAACCAGGA
GCTGTCGAATCATGGCGTGATCAATGTCAAATGGCTTTGAATGATTATTT
AACACGTGATCCAACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAA
TTTTTGGACGCTTACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTC
TTCAGGAAAGAAATTGGTGATATGCATATGGAGACTTTGGTTCGGAATAT
CTTTCATAGAACCTGAATGAACAATTTATTGTCAGGTCGTCTTTTGGACA
CTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATTACGGTGTT
TACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATTCGCAAAAA
CAAaaaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACA
ACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATT
CATCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAA
CATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCACCT
TACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCACCAA
CAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGTGTC
CAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagatttta
tggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTACGAA
GAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTCAA
AATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTACG
TTGACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATT
GCGGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTAGACTACTT
GCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGAT
ATATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGGATGAACGT
GAAATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATACATCAGTGC
GTTAACAGAACCAGGAGCTGTCGAATCATGGCGTGATCAATGTCAAATGG
CTTTGAATGATTATTTAACACGTGATCCAACGTTGAACCCTGGACGTTTC
GGACGAATGTTGTTAATTTTTGGACGCTTACAACGCGTGGATCCGAGGCT
GATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGATATGCATATGGAGA
CTTTGGTTCGGAATATCTTTCATAGAACCTGAATGAACAATTTATTGTCA
GGTCGTCTTTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGG
CAAACATTACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAA
GAAGCATTCGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAAT
ATCGATTTAAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTG
CCCTATCGATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAA
AATGTTTGGAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGT
CCAAGAAACTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCA
TCACCATCTTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGG
AAATTGCTGTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAt
agttttgaagattttatggATATGGTTTTATATGCAACTGAGAAATGTTT
AACTCCAGATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAG
CTAAACTATTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTC
GCTTCTCTTTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAG
CTCGTTATTCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACT
GGCTTCTAGACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAA
GTGCGCATGCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATT
AGACTTGGATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTA
ATCCATACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCATGGCGT
GATCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCAACGTT
GAACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTTACAAC
GCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGT
GATATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACCTGAAT
GAACAATTTATTGTCAGGTCGTCTTTTGGACACTCCCTGCGTGGTTTGCG
GTGATAATTCGTCCGGCAAACATTACGGTGTTTACGCTTGTGATGGCTGC
AGTGGATTCTTCAAAAGAAGCATTCGCAAAAACAAaaaatacACTTGTCG
TCAATCACAACATAATATCGATTTAAATAACAACGAGGGCGGAAATAAAC
CTGTTTTCCGATCGTGCCCTATCGATAAAATTCATCGAAATCAATGTCGA
TTTTGTCGATTACAAAAATGTTTGGAAGTTAACATGAATAAAGATGCTGT
CCAGCACGAGCGAGGTCCAAGAAACTCCACCTTACGTAAACAAAGACAAG
ACAAACTATTGGCCCATCACCATCTTCACCAACAGCAACCTGCTCCTCGA
CCAATCAGATACGAGGAAATTGCTGTCGTGTCCAGCCCTCCTTTGAGAAA
AAGCCCAAAAAATGAtagttttgaagattttatggATATGGTTTTATATG
CAACTGAGAAATGTTTAACTCCAGATTACGAAGAGAACCGTCACCTATCA
ATGACAGAGGTGACAGCTAAACTATTATTCAAAATCATCCAATGGACCAA
GAAATTACCTCCTTTCGCTTCTCTTTACTACGTTGACCAGATTATACTGA
TGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAATGGAGA
ATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAAGATCG
TTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCTATTGG
CTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTTTGTTA
TTCATAGGTTTATTTAATCCATACATCAGTGCGTTAACAGAACCAGGAGC
TGTCGAATCATGGCGTGATCAATGTCAAATGGCTTTGAATGATTATTTAA
CACGTGATCCAACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAATT
TTTGGACGCTTACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTT
CAGGAAAGAAATTGGTGATATGCATATGGAGACTTTGGTTCGGAATATCT
TTCATAGAACCTGAATGAACAATTTATTGTCAGGTCGTCTTTTGGACACT
CCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATTACGGTGTTTA
CGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATTCGCAAAAACA
AaaaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACAAC
GAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCA
TCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAACA
TGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCACCTTA
CGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCACCAACA
GCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGTGTCCA
GCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagattttatg
gATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTACGAAGA
GAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTCAAAA
TCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTACGTT
GACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGC
GGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTAGACTACTTGC
GAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATAT
ATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGGATGAACGTGA
AATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATACATCAGTGCGT
TAACAGAACCAGGAGCTGTCGAATCATGGCGTGATCAATGTCAAATGGCT
TTGAATGATTATTTAACACGTGATCCAACGTTGAACCCTGGACGTTTCGG
ACGAATGTTGTTAATTTTTGGACGCTTACAACGCGTGGATCCGAGGCTGA
TTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGATATGCATATGGAGACT
TTGGTTCGGAATATCTTTCATAGAACCTGAATGAACAATTTATTGTCAGG
TCGTCTTTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCA
AACATTACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGA
AGCATTCGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAATAT
CGATTTAAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCC
CTATCGATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAAAA
TGTTTGGAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCC
AAGAAACTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATC
ACCATCTTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAA
ATTGCTGTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtag
ttttgaagattttatggATATGGTTTTATATGCAACTGAGAAATGTTTAA
CTCCAGATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAGCT
AAACTATTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGC
TTCTCTTTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAGCT
CGTTATTCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACTGG
CTTCTAGACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGT
GCGCATGCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATTAG
ACTTGGATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTAAT
CCATACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCATGGCGTGA
TCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCAACGTTGA
ACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTTACAACGC
GTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGA
TATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002743XLOC_002743Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004836-proteinTCONS_00004836-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004836-exon-sc0000049-1491911889:24391..26151TCONS_00004836-exon-sc0000049-1491911889:24391..26151Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1510915933:24391..26151TCONS_00004836-exon-sc0000049-1510915933:24391..26151Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1575043694:24391..26151TCONS_00004836-exon-sc0000049-1575043694:24391..26151Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1491911889:26790..26950TCONS_00004836-exon-sc0000049-1491911889:26790..26950Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1510915933:26790..26950TCONS_00004836-exon-sc0000049-1510915933:26790..26950Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1575043694:26790..26950TCONS_00004836-exon-sc0000049-1575043694:26790..26950Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1491911889:27158..27396TCONS_00004836-exon-sc0000049-1491911889:27158..27396Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1510915933:27158..27396TCONS_00004836-exon-sc0000049-1510915933:27158..27396Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1575043694:27158..27396TCONS_00004836-exon-sc0000049-1575043694:27158..27396Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1491911889:27546..27650TCONS_00004836-exon-sc0000049-1491911889:27546..27650Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1510915933:27546..27650TCONS_00004836-exon-sc0000049-1510915933:27546..27650Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1575043694:27546..27650TCONS_00004836-exon-sc0000049-1575043694:27546..27650Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1491911889:27936..28167TCONS_00004836-exon-sc0000049-1491911889:27936..28167Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1510915933:27936..28167TCONS_00004836-exon-sc0000049-1510915933:27936..28167Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1575043694:27936..28167TCONS_00004836-exon-sc0000049-1575043694:27936..28167Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1491911889:28602..29246TCONS_00004836-exon-sc0000049-1491911889:28602..29246Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1510915933:28602..29246TCONS_00004836-exon-sc0000049-1510915933:28602..29246Clytia hemisphaericaexon
TCONS_00004836-exon-sc0000049-1575043694:28602..29246TCONS_00004836-exon-sc0000049-1575043694:28602..29246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:24391..29246 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.701332	0	0	0	1.2381	0	0.68548	0.442815	0	5.50196e-10	0.262088	0.67952	1.0114	0.864801	0	0	0	3.97933e-09	0	0	0.000666126	0.000254803	0.260642	0.000460627	1.36575e-08	0	1.47566	0.65288	4.09999e-08	1.01189
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00004836 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.491e-67
Identity = 152/402 (37.81%), Postives = 215/402 (53.48%), Query Frame = 2 
Query: 1640 SGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTCRQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDAVQHERGPRNSTLRKQ------RQDKXXXXXXXXXXXXXXRPIRYE----------EIAVVSSPPLRK--------SPKNDSFEDFMDMVLY--ATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWTKKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSDDWLLDYLRDYEDRFSERE-----VRMLRYIXXXXXXXXXXXXXEREMACLLFIGLFNPY-------ISALTEPGAVESWRDQCQMALNDYL-TRDPTLNPGRFGRMLLIFGRLQRVDPRLIEGVFFRKEIGDMHMETLVRNIF 2728
            + R+LD PC VCGD SSGKHYGVYACDGCSGFFKRSIR+N+ Y C+        + N+GG       CP+DK HRNQCR CRL+KCLEVNMNKDAVQHERGPR ST+RKQ         +             P P  +           E+A VS+ P R+        +PK     +   M LY  ATE             S+ E  A+LLF  I+W K +P F++L   DQ++L++++W  LF++   QW I  D   L  +       ++ +     +  ++ + +++A   QL LD  E ACL  I  F          + +     A+ + +D+ Q+ LN Y+ TR PT  P RFG++LL+   L+ + P  IE VFF+K IG++ +  L+ +++
Sbjct:    8 TSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCK--------SGNQGG-------CPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATE-------------SVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPT-QPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY 380
The following BLAST results are available for this feature:
BLAST of TCONS_00004836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E11.491e-6737.81Nuclear receptor subfamily 2 group E member 1 OS=H... [more]
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