|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004836 ID=TCONS_00004836|Name=TCONS_00004836|organism=Clytia hemisphaerica|type=transcript|length=3143bp GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt attcttacgatattcttaattattggccattttcatcatggacattctta taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT CGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAATATCGATTT AAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCG ATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTG GAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAA CTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATC TTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCT GTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttga agattttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAG ATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTA TTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCT TTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTAT TCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTA GACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCAT GCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGG ATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATAC ATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCATGGCGTGATCAATG TCAAATGGCTTTGAATGATTATTTAACACGTGATCCAACGTTGAACCCTG GACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTTACAACGCGTGGAT CCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGATATGCA TATGGAGACTTTGGTTCGGAATATCTTTCATAGAACCTGATTGGCTGCGG TCGCCGCGATGATTCAAAATTAGATTCTAAAAAGGATGAATGCatgtaat aaaacaaaaatgaaaactttcaaataaatCTGGTATCGAGGCTAACCTCT AGATTATTTAACCGTATTCTGAGGACAAAAAAGACAACCATGTATCAAGA GCTCTGTGATGACTACATAATTTTTATACGCAGAAATTACTTTATTAATT AAAactatatataatttttattgatttttaaaataaataaatcttttAAT CGGGGAAGGACATAAAATTTAATTGATCATCTTTTGTTCAAACCTAGTTC TAATTTTAGATAAAAGAAGGGTGTATTCCTATGGTCAAATTTGGTGTGCA ACTCTTTTAATTGTCATCCATGTCAAAGAGAATAACAAAAATA Run BLAST on NCBI protein sequence of TCONS_00004836-protein >TCONS_00004836-protein ID=TCONS_00004836-protein|Name=TCONS_00004836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MNNLLSGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTC RQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDA VQHERGPRNSTLRKQRQDKLLAHHHLHQQQPAPRPIRYEEIAVVSSPPLR KSPKNDSFEDFMDMVLYATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWT KKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSDDWLLDYLRDYED RFSEREVRMLRYIADLLADLDQLDLDEREMACLLFIGLFNPYISALTEPG AVESWRDQCQMALNDYLTRDPTLNPGRFGRMLLIFGRLQRVDPRLIEGVF FRKEIGDMHMETLVRNIFHRT Run BLAST on NCBI transcript from alignment at sc0000049:24391..29246+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004836 ID=TCONS_00004836|Name=TCONS_00004836|organism=Clytia hemisphaerica|type=transcript|length=4856bp|location=Sequence derived from alignment at sc0000049:24391..29246+ (Clytia hemisphaerica) GCGTGTAATCCATGCCTTAGGCAAAGATTTGACATTTTTGTGGATTCTTT
TAGCATTGCTAGGGAATAATTGTCAATTTGATTGTAAAATGGTCTATAAA
agtggcattcttaggttcagttgctaaatttcatgatggtgataatcttt
attcttacgatattcttaattattggccattttcatcatggacattctta
taaagtatattcttataaaaaagtgtgtattttaATTGTAGgtgtttttt
tcctttttttgggCAGGGGGCGGTGTTGGAAGTTGAGCCAATTCAATTCC
ATTGCAATAATTTCGACCTTTGCATTTTCCAGAGCTACTTTCCATACCAA
ATGATATTTAATGAAGAGGTACCAAGAATAACTAATGAActgattttatc
atttttatgcGTCACAGACTGCAACCTTCCATAGAGGTAACTAGTTATAT
AGCTACAAACTTGATTTCAGCTTCTGAATAATTTCAAGATACAGATGATG
AACATTATCTGACTTAGCAACCGAATTTTGATACTTACTTTACTAATGTA
TGAGTCAAtcctattttgtcaaaataaagatttggaaaatttaaagGGAA
CCCtcttttattgataaaaaatgaggaaaatatcaaaaaaccaCTTTAAC
AAAGTAAATCCCGAATCGAAAGATTAAGTGgaaataaaatcaagcaaaat
aagaaaataatggaactctaaatcggaatagaatggaagatttagtagtc
ataaaaaaattcttgaacttAAAAAACTATCGTTTATAGAAACCTCAAAG
GGAGGACTTATTATTTTGTGGCATTATGAGCCATTTTATGTATCTCTCTT
TGTATAGTAATGTCTCTTTACTTtgcttttcttcttttcttaaaCAAGTT
CCCCCtttgaaaaacaacaaattctttcggttaaaattttttttctagga
TTTTAAATTATTAATTGCTGAAGGGGTTTTGTATGCTAAATTAAAAAATC
CTGTCCTTTTTTACCCTATTCCCCCACTTTTATTATTTGTTAATATCGAA
TGTATTATTTTGATATCAATTTTATTAtcaatttctattgtttcattatt
ttttgtttattgtgTCCGTTGAAAACTCTATTATTTGATGGAGCTGGTAT
ATAAAGCAGCAAGATTTCCAATCTCCCCAACAATATTATTTGATCATTGC
TTGGCGTTTGATAAATTTCTAATCAATAATATTGATAATCAATATAACCA
ATAATCAATCAACAATGACAACAATCAACAAATCAGGTATGTTCTCAAAC
TATCTTTTTAGTatgtattttattttgtttgacaGACTTAAATAGCAGTG
ATCATTGAGCTTTTTATAACACAGTTAAAAACTGCGACTTTTTTTGGGTG
AATTCATAGTGAGAAGCTGCAGAGTTTCAATAATTTACGGTGAAAAGTTG
TAATCTTGTGAAAGATGCGCTTCAATTCAGCAGAAGAGTCACAGTGATTC
CTCTTTGACTTTTTTCCTGTGAAGATTTCAAGGAACTCGTCCGGCGTTAC
TTTATGTAGTTAATCgtattttttatattcaaaatttctAACCCTCTCTG
ATCTTTACCCGCAAAACTAACCGAATGAACAATTTATTGTCAGGTCGTCT
TTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATT
ACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATT
CGCAAAAACAAGTAAGAAACGTTCCGCCTACAATTATGTTTAGTCACTGT
CTCAATGTTATCAAGTTTGATTGTAATATCTGTAAGGTTGTGATAGCTTT
GCCAAAACTAGGGAAGAATAATGGATTTAGCTATTTTGCGCCTGACCCGA
GGCGTTCAGAAAGTTTTTCCTCGTTTTACTGCGAAAAACTGCAGCTTCTA
CTCTAggtaaaaaaaagacaaaaagaatcCTGGAATTACTGTAGTATTCT
GCAGTAGTGAATGTTACTTTGAACTTTCCCTCGTTGCTATCAGAAATTAC
TTTCAACTATTGTACTATGATTTTACGACAGCAATTGGGGGTTTGTTTGA
GAGATTTTTTGTTAACGTCTGGTGCATCCATACATTCACTAAATTCGACC
AAATAGCTTAAAGGAATTTGTAGAAGATATcattcatctgtcgtccagtc
ccAAATAAAGAAACTATTTTATGTCTCGCATCTGTCTTTTGCTGTTCTAA
GAAATCCGAAAAACCCAATAACGTATCGTTTTAGTAAAAGTTAAAgatct
tttcttttgttaacaCACCTGTCATTAGTCTCTCCAAAAGTCAAGGAAAT
TGATGATTGAGaacaaaattctaaaataatttttatttatttttcataga
aaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACAACGA
GGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCATC
GAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAACATG
AATAAAGATGGTAGGACCTTTTTTAACCTTCTTATTatggttttctttat
tttgttattgttccGCTCAATAATATCTTTCCACTTTCATTTACTGAAAA
ATCgaaactaaaatttgaaataatatgGCTATGACATTTAGTGACTTTTG
AAGAAACGTCATCTATTTCGTTATTTCGAACTCTTATTTTGTATTGTCGA
TTTATTGTTGTTCTCAGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCA
CCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCAC
CAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGT
GTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagatt
ttatggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTAC
GAAGAGGTTTGTCATTCCGTTCTTTGTTCGAATCTTCGTTTAAATCCTTC
GTTTTCGGACTGTTCCATTCTCACCCAAAATTTAGCCCTAAATCTTAAGA
TTGGAGCCTACTATTTACTCATGTTAAAcaagttttcattatttttcttg
CACAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTC
AAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTA
CGTTGACCAGGTGAGAATCTCAAATTCAATTTGGTCTTCGGTCTCTTTTT
AACAggagaattcatgatatgcaccattgcaatgtcttccacggacccaa
cagctgattggttcaacgtgattttacgtcacttaccaccaatcagctat
tgggtccgtgatgtaatgtcagaagatattgcaatggtgcaaTAATGAAT
ATACTTCAGTCGAACTCCCATAGCTTGATTCTCCATTATTCTTGGATCTG
TGTGTTCGGTGTATTTCTAAGACTTTAAACATTGATTTTTAATAGATTAT
ACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAAT
GGAGAATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAA
GATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCT
ATTGGCTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTT
TGTTATTCATAGGTTTATTTAATCCATGTAAGTAATTTTGTTAGATCCCT
NTTTGGATGAGCGTGAAATGGCTTGTTTGTTATTCATAGGACTATTTAAT
CCATGTAAGTAATTTTGTTAGATCCCTTTCCGTATTTGCGCATTTAGATG
GGTGCAATTATGCCAACCAATGCATTTTCATTCTCCCCATTATCAGTAAC
TTCAGCATGATAGACCCATTTTGAGAAATTATCAACCACGATTCCCGAAT
GAACCGCCTATGGGTGCTATCAATAATGGTGCATGGGTCGCAGCGCCCCT
AGGTCCTTACCAGCGGTATCCAGTTAGAAATTAGTGTGATGGAACGGCAA
ACATTCCTCTGGAATGTCTGACAACATTCATCATATCTTTGTATGTAAAA
GATTacccaattttccaattttcgaaaatcgaataattattttctttttt
ctgcaTTTTAGACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCAT
GGCGTGATCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCA
ACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTT
ACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAA
TTGGTGATATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACC
TGATTGGCTGCGGTCGCCGCGATGATTCAAAATTAGATTCTAAAAAGGAT
GAATGCatgtaataaaacaaaaatgaaaactttcaaataaatCTGGTATC
GAGGCTAACCTCTAGATTATTTAACCGTATTCTGAGGACAAAAAAGACAA
CCATGTATCAAGAGCTCTGTGATGACTACATAATTTTTATACGCAGAAAT
TACTTTATTAATTAAAactatatataatttttattgatttttaaaataaa
taaatcttttAATCGGGGAAGGACATAAAATTTAATTGATCATCTTTTGT
TCAAACCTAGTTCTAATTTTAGATAAAAGAAGGGTGTATTCCTATGGTCA
AATTTGGTGTGCAACTCTTTTAATTGTCATCCATGTCAAAGAGAATAACA
AAAATA Coding sequence (CDS) from alignment at sc0000049:24391..29246+ >TCONS_00004836 ID=TCONS_00004836|Name=TCONS_00004836|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at sc0000049:24391..29246+ (Clytia hemisphaerica) ATGAACAATTTATTGTCAGGTCGTCTTTTGGACACTCCCTGCGTGGTTTG CGGTGATAATTCGTCCGGCAAACATTACGGTGTTTACGCTTGTGATGGCT GCAGTGGATTCTTCAAAAGAAGCATTCGCAAAAACAAaaaatacACTTGT CGTCAATCACAACATAATATCGATTTAAATAACAACGAGGGCGGAAATAA ACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCATCGAAATCAATGTC GATTTTGTCGATTACAAAAATGTTTGGAAGTTAACATGAATAAAGATGCT GTCCAGCACGAGCGAGGTCCAAGAAACTCCACCTTACGTAAACAAAGACA AGACAAACTATTGGCCCATCACCATCTTCACCAACAGCAACCTGCTCCTC GACCAATCAGATACGAGGAAATTGCTGTCGTGTCCAGCCCTCCTTTGAGA AAAAGCCCAAAAAATGAtagttttgaagattttatggATATGGTTTTATA TGCAACTGAGAAATGTTTAACTCCAGATTACGAAGAGAACCGTCACCTAT CAATGACAGAGGTGACAGCTAAACTATTATTCAAAATCATCCAATGGACC AAGAAATTACCTCCTTTCGCTTCTCTTTACTACGTTGACCAGATTATACT GATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAATGGA GAATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAAGAT CGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCTATT GGCTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTTTGT TATTCATAGGTTTATTTAATCCATACATCAGTGCGTTAACAGAACCAGGA GCTGTCGAATCATGGCGTGATCAATGTCAAATGGCTTTGAATGATTATTT AACACGTGATCCAACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAA TTTTTGGACGCTTACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTC TTCAGGAAAGAAATTGGTGATATGCATATGGAGACTTTGGTTCGGAATAT CTTTCATAGAACCTGAATGAACAATTTATTGTCAGGTCGTCTTTTGGACA CTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATTACGGTGTT TACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATTCGCAAAAA CAAaaaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACA ACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATT CATCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAA CATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCACCT TACGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCACCAA CAGCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGTGTC CAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagatttta tggATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTACGAA GAGAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTCAA AATCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTACG TTGACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATT GCGGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTAGACTACTT GCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGAT ATATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGGATGAACGT GAAATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATACATCAGTGC GTTAACAGAACCAGGAGCTGTCGAATCATGGCGTGATCAATGTCAAATGG CTTTGAATGATTATTTAACACGTGATCCAACGTTGAACCCTGGACGTTTC GGACGAATGTTGTTAATTTTTGGACGCTTACAACGCGTGGATCCGAGGCT GATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGATATGCATATGGAGA CTTTGGTTCGGAATATCTTTCATAGAACCTGAATGAACAATTTATTGTCA GGTCGTCTTTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGG CAAACATTACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAA GAAGCATTCGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAAT ATCGATTTAAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTG CCCTATCGATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAA AATGTTTGGAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGT CCAAGAAACTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCA TCACCATCTTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGG AAATTGCTGTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAt agttttgaagattttatggATATGGTTTTATATGCAACTGAGAAATGTTT AACTCCAGATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAG CTAAACTATTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTC GCTTCTCTTTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAG CTCGTTATTCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACT GGCTTCTAGACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAA GTGCGCATGCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATT AGACTTGGATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTA ATCCATACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCATGGCGT GATCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCAACGTT GAACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTTACAAC GCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGT GATATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACCTGAAT GAACAATTTATTGTCAGGTCGTCTTTTGGACACTCCCTGCGTGGTTTGCG GTGATAATTCGTCCGGCAAACATTACGGTGTTTACGCTTGTGATGGCTGC AGTGGATTCTTCAAAAGAAGCATTCGCAAAAACAAaaaatacACTTGTCG TCAATCACAACATAATATCGATTTAAATAACAACGAGGGCGGAAATAAAC CTGTTTTCCGATCGTGCCCTATCGATAAAATTCATCGAAATCAATGTCGA TTTTGTCGATTACAAAAATGTTTGGAAGTTAACATGAATAAAGATGCTGT CCAGCACGAGCGAGGTCCAAGAAACTCCACCTTACGTAAACAAAGACAAG ACAAACTATTGGCCCATCACCATCTTCACCAACAGCAACCTGCTCCTCGA CCAATCAGATACGAGGAAATTGCTGTCGTGTCCAGCCCTCCTTTGAGAAA AAGCCCAAAAAATGAtagttttgaagattttatggATATGGTTTTATATG CAACTGAGAAATGTTTAACTCCAGATTACGAAGAGAACCGTCACCTATCA ATGACAGAGGTGACAGCTAAACTATTATTCAAAATCATCCAATGGACCAA GAAATTACCTCCTTTCGCTTCTCTTTACTACGTTGACCAGATTATACTGA TGCAAGAATCTTGGAGCTCGTTATTCCTCATTGCGGCCGTTCAATGGAGA ATAGTATCAGATGACTGGCTTCTAGACTACTTGCGAGATTACGAAGATCG TTTCAGTGAACGCGAAGTGCGCATGCTCAGATATATTGCTGATCTATTGG CTGATTTGGACCAATTAGACTTGGATGAACGTGAAATGGCTTGTTTGTTA TTCATAGGTTTATTTAATCCATACATCAGTGCGTTAACAGAACCAGGAGC TGTCGAATCATGGCGTGATCAATGTCAAATGGCTTTGAATGATTATTTAA CACGTGATCCAACGTTGAACCCTGGACGTTTCGGACGAATGTTGTTAATT TTTGGACGCTTACAACGCGTGGATCCGAGGCTGATTGAAGGTGTTTTCTT CAGGAAAGAAATTGGTGATATGCATATGGAGACTTTGGTTCGGAATATCT TTCATAGAACCTGAATGAACAATTTATTGTCAGGTCGTCTTTTGGACACT CCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCAAACATTACGGTGTTTA CGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGAAGCATTCGCAAAAACA AaaaatacACTTGTCGTCAATCACAACATAATATCGATTTAAATAACAAC GAGGGCGGAAATAAACCTGTTTTCCGATCGTGCCCTATCGATAAAATTCA TCGAAATCAATGTCGATTTTGTCGATTACAAAAATGTTTGGAAGTTAACA TGAATAAAGATGCTGTCCAGCACGAGCGAGGTCCAAGAAACTCCACCTTA CGTAAACAAAGACAAGACAAACTATTGGCCCATCACCATCTTCACCAACA GCAACCTGCTCCTCGACCAATCAGATACGAGGAAATTGCTGTCGTGTCCA GCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtagttttgaagattttatg gATATGGTTTTATATGCAACTGAGAAATGTTTAACTCCAGATTACGAAGA GAACCGTCACCTATCAATGACAGAGGTGACAGCTAAACTATTATTCAAAA TCATCCAATGGACCAAGAAATTACCTCCTTTCGCTTCTCTTTACTACGTT GACCAGATTATACTGATGCAAGAATCTTGGAGCTCGTTATTCCTCATTGC GGCCGTTCAATGGAGAATAGTATCAGATGACTGGCTTCTAGACTACTTGC GAGATTACGAAGATCGTTTCAGTGAACGCGAAGTGCGCATGCTCAGATAT ATTGCTGATCTATTGGCTGATTTGGACCAATTAGACTTGGATGAACGTGA AATGGCTTGTTTGTTATTCATAGGTTTATTTAATCCATACATCAGTGCGT TAACAGAACCAGGAGCTGTCGAATCATGGCGTGATCAATGTCAAATGGCT TTGAATGATTATTTAACACGTGATCCAACGTTGAACCCTGGACGTTTCGG ACGAATGTTGTTAATTTTTGGACGCTTACAACGCGTGGATCCGAGGCTGA TTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGATATGCATATGGAGACT TTGGTTCGGAATATCTTTCATAGAACCTGAATGAACAATTTATTGTCAGG TCGTCTTTTGGACACTCCCTGCGTGGTTTGCGGTGATAATTCGTCCGGCA AACATTACGGTGTTTACGCTTGTGATGGCTGCAGTGGATTCTTCAAAAGA AGCATTCGCAAAAACAAaaaatacACTTGTCGTCAATCACAACATAATAT CGATTTAAATAACAACGAGGGCGGAAATAAACCTGTTTTCCGATCGTGCC CTATCGATAAAATTCATCGAAATCAATGTCGATTTTGTCGATTACAAAAA TGTTTGGAAGTTAACATGAATAAAGATGCTGTCCAGCACGAGCGAGGTCC AAGAAACTCCACCTTACGTAAACAAAGACAAGACAAACTATTGGCCCATC ACCATCTTCACCAACAGCAACCTGCTCCTCGACCAATCAGATACGAGGAA ATTGCTGTCGTGTCCAGCCCTCCTTTGAGAAAAAGCCCAAAAAATGAtag ttttgaagattttatggATATGGTTTTATATGCAACTGAGAAATGTTTAA CTCCAGATTACGAAGAGAACCGTCACCTATCAATGACAGAGGTGACAGCT AAACTATTATTCAAAATCATCCAATGGACCAAGAAATTACCTCCTTTCGC TTCTCTTTACTACGTTGACCAGATTATACTGATGCAAGAATCTTGGAGCT CGTTATTCCTCATTGCGGCCGTTCAATGGAGAATAGTATCAGATGACTGG CTTCTAGACTACTTGCGAGATTACGAAGATCGTTTCAGTGAACGCGAAGT GCGCATGCTCAGATATATTGCTGATCTATTGGCTGATTTGGACCAATTAG ACTTGGATGAACGTGAAATGGCTTGTTTGTTATTCATAGGTTTATTTAAT CCATACATCAGTGCGTTAACAGAACCAGGAGCTGTCGAATCATGGCGTGA TCAATGTCAAATGGCTTTGAATGATTATTTAACACGTGATCCAACGTTGA ACCCTGGACGTTTCGGACGAATGTTGTTAATTTTTGGACGCTTACAACGC GTGGATCCGAGGCTGATTGAAGGTGTTTTCTTCAGGAAAGAAATTGGTGA TATGCATATGGAGACTTTGGTTCGGAATATCTTTCATAGAACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004836-exon-sc0000049-1491911889:24391..26151 | TCONS_00004836-exon-sc0000049-1491911889:24391..26151 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1510915933:24391..26151 | TCONS_00004836-exon-sc0000049-1510915933:24391..26151 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1575043694:24391..26151 | TCONS_00004836-exon-sc0000049-1575043694:24391..26151 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1491911889:26790..26950 | TCONS_00004836-exon-sc0000049-1491911889:26790..26950 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1510915933:26790..26950 | TCONS_00004836-exon-sc0000049-1510915933:26790..26950 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1575043694:26790..26950 | TCONS_00004836-exon-sc0000049-1575043694:26790..26950 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1491911889:27158..27396 | TCONS_00004836-exon-sc0000049-1491911889:27158..27396 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1510915933:27158..27396 | TCONS_00004836-exon-sc0000049-1510915933:27158..27396 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1575043694:27158..27396 | TCONS_00004836-exon-sc0000049-1575043694:27158..27396 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1491911889:27546..27650 | TCONS_00004836-exon-sc0000049-1491911889:27546..27650 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1510915933:27546..27650 | TCONS_00004836-exon-sc0000049-1510915933:27546..27650 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1575043694:27546..27650 | TCONS_00004836-exon-sc0000049-1575043694:27546..27650 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1491911889:27936..28167 | TCONS_00004836-exon-sc0000049-1491911889:27936..28167 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1510915933:27936..28167 | TCONS_00004836-exon-sc0000049-1510915933:27936..28167 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1575043694:27936..28167 | TCONS_00004836-exon-sc0000049-1575043694:27936..28167 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1491911889:28602..29246 | TCONS_00004836-exon-sc0000049-1491911889:28602..29246 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1510915933:28602..29246 | TCONS_00004836-exon-sc0000049-1510915933:28602..29246 | Clytia hemisphaerica | exon |
TCONS_00004836-exon-sc0000049-1575043694:28602..29246 | TCONS_00004836-exon-sc0000049-1575043694:28602..29246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000049 | supercontig | sc0000049:24391..29246 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0043401 | steroid hormone mediated signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0003707 | steroid hormone receptor activity |
GO:0003677 | DNA binding |
GO:0043565 | sequence-specific DNA binding |
GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | zinc ion binding |
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
biological_process |
GO:0043401 |
steroid hormone mediated signaling pathway |
cellular_component |
GO:0005634 |
nucleus |
molecular_function |
GO:0003677 |
DNA binding |
molecular_function |
GO:0043565 |
sequence-specific DNA binding |
molecular_function |
GO:0003707 |
steroid hormone receptor activity |
molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00004836 vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 1.491e-67 Identity = 152/402 (37.81%), Postives = 215/402 (53.48%), Query Frame = 2
Query: 1640 SGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTCRQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDAVQHERGPRNSTLRKQ------RQDKXXXXXXXXXXXXXXRPIRYE----------EIAVVSSPPLRK--------SPKNDSFEDFMDMVLY--ATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWTKKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSDDWLLDYLRDYEDRFSERE-----VRMLRYIXXXXXXXXXXXXXEREMACLLFIGLFNPY-------ISALTEPGAVESWRDQCQMALNDYL-TRDPTLNPGRFGRMLLIFGRLQRVDPRLIEGVFFRKEIGDMHMETLVRNIF 2728
+ R+LD PC VCGD SSGKHYGVYACDGCSGFFKRSIR+N+ Y C+ + N+GG CP+DK HRNQCR CRL+KCLEVNMNKDAVQHERGPR ST+RKQ + P P + E+A VS+ P R+ +PK + M LY ATE S+ E A+LLF I+W K +P F++L DQ++L++++W LF++ QW I D L + ++ + + ++ + +++A QL LD E ACL I F + + A+ + +D+ Q+ LN Y+ TR PT P RFG++LL+ L+ + P IE VFF+K IG++ + L+ +++
Sbjct: 8 TSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCK--------SGNQGG-------CPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATE-------------SVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPT-QPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY 380
The following BLAST results are available for this feature:
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