TCONS_00004836-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004836-protein
Unique NameTCONS_00004836-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004836-protein ID=TCONS_00004836-protein|Name=TCONS_00004836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MNNLLSGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTC
RQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDA
VQHERGPRNSTLRKQRQDKLLAHHHLHQQQPAPRPIRYEEIAVVSSPPLR
KSPKNDSFEDFMDMVLYATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWT
KKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSDDWLLDYLRDYED
RFSEREVRMLRYIADLLADLDQLDLDEREMACLLFIGLFNPYISALTEPG
AVESWRDQCQMALNDYLTRDPTLNPGRFGRMLLIFGRLQRVDPRLIEGVF
FRKEIGDMHMETLVRNIFHRT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002743XLOC_002743Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004836TCONS_00004836Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 209..225
score: 32.71
coord: 92..102
score: 44.0
coord: 330..347
score: 19.21
coord: 273..288
score: 36.36
coord: 188..209
score: 30.04
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 14..30
score: 56.13
coord: 30..45
score: 53.94
coord: 88..96
score: 56.6
coord: 80..88
score: 58.94
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 11..99
e-value: 9.1E-29
score: 111.6
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 13..55
e-value: 5.0E-17
score: 62.0
coord: 71..98
e-value: 1.0E-7
score: 32.2
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 14..40
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 11..103
score: 19.421
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 187..342
e-value: 5.5E-17
score: 72.4
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 183..352
e-value: 3.4E-21
score: 75.7
IPR000536Nuclear hormone receptor, ligand-binding domainSUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 158..369
coord: 97..111
NoneNo IPR availableGENE3D1.10.565.10coord: 86..369
e-value: 8.0E-56
score: 188.7
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 11..113
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 12..85
e-value: 3.5E-27
score: 94.3

Blast
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BLAST of TCONS_00004836-protein vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.428e-83
Identity = 155/402 (38.56%), Postives = 219/402 (54.48%), Query Frame = 0 
Query:    6 SGRLLDTPCVVCGDNSSGKHYGVYACDGCSGFFKRSIRKNKKYTCRQSQHNIDLNNNEGGNKPVFRSCPIDKIHRNQCRFCRLQKCLEVNMNKDAVQHERGPRNSTLRKQ--------RQDKLLAHHHLHQQQPAPRPIRYE--------EIAVVSSPPLRK--------SPKNDSFEDFMDMVLY--ATEKCLTPDYEENRHLSMTEVTAKLLFKIIQWTKKLPPFASLYYVDQIILMQESWSSLFLIAAVQWRIVSDDWLLDYLRDYEDRFSERE-----VRMLRYIADLLADLDQLDLDEREMACLLFIGLFNPY-------ISALTEPGAVESWRDQCQMALNDYL-TRDPTLNPGRFGRMLLIFGRLQRVDPRLIEGVFFRKEIGDMHMETLVRNIF 368
            + R+LD PC VCGD SSGKHYGVYACDGCSGFFKRSIR+N+ Y C+        + N+GG       CP+DK HRNQCR CRL+KCLEVNMNKDAVQHERGPR ST+RKQ        +++   A H      PAP              E+A VS+ P R+        +PK     +   M LY  ATE             S+ E  A+LLF  I+W K +P F++L   DQ++L++++W  LF++   QW I  D   L  +       ++ +     +  ++ + +++A   QL LD  E ACL  I  F          + +     A+ + +D+ Q+ LN Y+ TR PT  P RFG++LL+   L+ + P  IE VFF+K IG++ +  L+ +++
Sbjct:    8 TSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCK--------SGNQGG-------CPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATE-------------SVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPT-QPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY 380
The following BLAST results are available for this feature:
BLAST of TCONS_00004836-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E19.428e-8338.56Nuclear receptor subfamily 2 group E member 1 OS=H... [more]
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