TCONS_00004102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004102
Unique NameTCONS_00004102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004102 ID=TCONS_00004102|Name=TCONS_00004102|organism=Clytia hemisphaerica|type=transcript|length=1260bp
TCGTGACATAATGTTTCCATTCCAAAAAGGCTGATGATTCATAGGGTCTT
GTTACAAATGTGATGTTTGGTATGAGGAGTATATAAATTGATTTGATACT
GATGAGATGATGTTTACTTTAGTAGaaatgcgttcttaatcttttgaaaT
ATCAATTCATTTGGAATTTGTTTCTACCGCGAAAGTATATCAAAGAATGA
CAATCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTCTTCGTCA
CCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGTTGGGTGA
AAAATATTGCGGAAAGACAGCGTTGACAGTTCGATATTTAACGGGGAAGT
TCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGCA
AACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAAA
TaCAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATG
CTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACAT
GTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATC
GGACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAG
CTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTAT
GAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCG
ACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATG
ACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGA
TCTCTGCATTTacctaaagaaaataaagctgtTAAAGTTGGACAAAGTAA
AAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTC
TCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGG
AAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGG
GCTGATTGAATTATGTGATTGTCAACACGGcttgaaaattttcagagttt
AGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGC
TAATAAATTGACtctcaattttcatttttctgtgttttcaccagaaggtt
tttctttttttgcaaatggAAGCTGATGTTTTAAGAATCTATAATAACTC
TGGTAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000039:110939..114398-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004102 ID=TCONS_00004102|Name=TCONS_00004102|organism=Clytia hemisphaerica|type=transcript|length=3460bp|location=Sequence derived from alignment at sc0000039:110939..114398- (Clytia hemisphaerica)
TCGTGACATAATGTTTCCATTCCAAAAAGGCTGATGATTCATAGGGTCTT
GTTACAAATGTGATGTTTGGTATGAGGAGTATATAAATTGATTTGATACT
GATGAGATGATGTTTACTTTAGTAGGTAGGGGAGTTTAGATCATATGAAG
GGGCCCATTGAAGTTGATGAAGATTCTGAATTTTAGAAAAACAATCAAAT
TTGTAGTATGTAATTTTCAAAAGATTCTAAAACGGGGTTCCGAATTATGA
TTGGCTAAACAAGCTTTTCGATTTGCTTGACGTACCCTAGAGTAGAGATT
GGCGCTGGCACATCGGGTGGTTAGTTATAAGATTAGTCCATAGATAACTT
ATTACTCAAAATAGTTTAAGATTATGCACCNTAAGATTAGTCCATAGATA
ACCTATTAATCAAAAGAGCTTGAGATTTTGCACTTCTGTCTCAATGACCA
AGAGATTAAATGTGTAATGGGAAATATCATTTTAACTGTATATTGAATAA
CTCTATTCATTTTGAGAGAGAATTCCATAATGGTTGCTTTCAGCATGTGC
TACATTGCGAAAGTAAAACCCAAGAGTATTATAACAGACTAGTGGCGTAA
ATAAATCGGTACAGCCGAATAAAGCGCCGAGTTTCAGCCTGACAATCTAG
TAAAACACCATTTTTAAGGCTGGTAGTAGTAGGTCCGACTACTGACAAGC
TTTCTGACGAAAAAGGGATTACGTTACAGAGAAAATGACAATGTCTCAGT
TTGGAACAGTTCGACGGTTGTTTGTTTTTCAGTGAAAAGCAACTATCATT
TTATCAAATATTTTGTTTCCATCATTGGAAGACCCTAGTAAATATAGTTT
TAATGTTGTAGGTATGCAATACAAATAGTGGGATTACTTTCTTATCATCA
CGTCTCGATTTTCAACAAATCTTTTTTTTTCTGCAGAAATGCGTTCTTAA
TCTTTTGAAATATCAATTCATTTGGAATTTGTTTCTACCGCGAAAGTATA
TCAAAGAATGACAATCAAAGTGGACGCACAACAACAGACCAAAATGAGAC
TTTCTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTG
GTGTTGGGTGAAAAATATTGCGGAAAGACAGGTAAGTTGGATCCAATCAC
ATCTAGCTGACTTTTTTAAATATTGATATGCCTCGTGATTATACTTCGCA
GTAAAAGCCAAAAGCTGATACAGGCTAGATCTTTATTGGTCAATTTAAGT
CAATTTTGAACTTTTACAAAGGCTGCGATCACCACGTTGTAGAGAACTGC
GACATTTGTTCCGGAAAAATCTTGGAATCAGTATCAAAAAATTAGATGCA
CGTAGGTGTCTAAAATATGACCGGCAACCAGTATTGAATATCTTGAAACC
AAAAAAATATGACCAGCAAATACGAGCAAATATATCATTTTTTGATGATT
CATGAAACATCAGGCATTGCATCCCTCTTTGATAAAACAACATTGTGGGT
TGACCCAAAACATCATGACAAACCCATACAACATAAATCAGTTATGTCAG
AAGGAGAAAGAAACCCTGCTGATGGAAAAATACCTTCCTCCGCAGAAAAT
GTATGGACGGAGGTTTGTGTACAAGATAAACAAGCACGGATTAGGATATA
TGATTATGCAATGTTAGCTTTCTCAANTGCTGATGGAAAAATACCTTCCT
CCGCAGAAAATGTATGGACGGAGGTTTGTGTACGAGATAAACAAGTACGG
ATTAGGATATATGATTATGCAATGTTTGCTTTCTCAAGTAATCAGTAAAA
CTAAATCTCGTGTTAAACGTTATTATAAACAGCATTTTTTCAAGATTCTT
GATTTTTTGTCTACTACTTGTCTGTAGATCAGGTCTGACTTTGTAAAACT
AACTAGAACATCAAAGTTATTATTGACTAAGAACCTAAATTTTGCTGATT
GAATCAAGTGAGCATCTGTACCATACCTATGTTAGTGCTAACCGAAGCTA
AGTTGAGTAAATGTCTGCAAATGATTCAATTTAAGGGACTTTGTAGAAAG
ATTTTTAAATTACTTCCACAACTATAAAACTGGGAAACACCAGAAAGTGG
AGATACTAGATCCAAAAAAGATAGAGACTACTCTAAAAAGTCTTCACAAC
ATCCCTGTAAGTTTCAAATGTAAATAACAAAAATACAACCATACAGTACC
CACTTCAACTAAATTTCAAAATTCGATATGGAAGCAAAGTGATATATTTT
CACATTTTTGACTCGTTTTAGCGTTGACAGTTCGATATTTAACGGGGAAG
TTCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGC
AAACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAA
ATGTAAGTAGAATAGAAAACACCCCTGTCTCAAACAGTGTAACAGTACAT
AAAAGTTTCACCGAGGCAAAAGGAGTCCTTGAGCGCTTGCCCCTTTCAGA
AATGACTGGTAGCAGTTGAAACTTTTAGCTTTAGTTTCCAGGGTGAGCTT
ATCTGTATTTCTTACACATTTTCTCCTTTTCCATACAACCCTTACTATAA
AAATGAACTACATATTTCAAAACTTAGGAACAGTATTTTTGATATTTTCA
GACAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATG
CTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACAT
GTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATC
GGACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAG
CTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTAT
GAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCG
ACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATG
ACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGA
TCTCTGCATTTACCTAAAGAAAATAAAGCTGTTAAAGTTGGACAAAGTAA
AAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTC
TCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGG
AAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGG
GCTGATTGAATTATGTGATTGTCAACACGGCTTGAAAATTTTCAGAGTTT
AGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGC
TAATAAATTGACTCTCAATTTTCATTTTTCTGTGTTTTCACCAGAAGGTT
TTTCTTTTTTTGCAAATGGAAGCTGATGTTTTAAGAATCTATAATAACTC
TGGTAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002285XLOC_002285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004102-exon-sc0000039-1575043694:114274..114398TCONS_00004102-exon-sc0000039-1575043694:114274..114398Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1575043694:113268..113462TCONS_00004102-exon-sc0000039-1575043694:113268..113462Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1575043694:111997..112127TCONS_00004102-exon-sc0000039-1575043694:111997..112127Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1575043694:110939..111747TCONS_00004102-exon-sc0000039-1575043694:110939..111747Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1510915933:114274..114398TCONS_00004102-exon-sc0000039-1510915933:114274..114398Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1510915933:113268..113462TCONS_00004102-exon-sc0000039-1510915933:113268..113462Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1510915933:111997..112127TCONS_00004102-exon-sc0000039-1510915933:111997..112127Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1510915933:110939..111747TCONS_00004102-exon-sc0000039-1510915933:110939..111747Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1491911889:114274..114398TCONS_00004102-exon-sc0000039-1491911889:114274..114398Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1491911889:113268..113462TCONS_00004102-exon-sc0000039-1491911889:113268..113462Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1491911889:111997..112127TCONS_00004102-exon-sc0000039-1491911889:111997..112127Clytia hemisphaericaexon
TCONS_00004102-exon-sc0000039-1491911889:110939..111747TCONS_00004102-exon-sc0000039-1491911889:110939..111747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:110939..114398 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.27791	0	0.278834	0	0	0	2.7967	8.75152e-10	0	0	2.21264	6.32215	0	0	0.299734	0.534417
Blast
[Close]
BLAST of TCONS_00004102 vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.542e-20
Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 2 
Query:  266 NKKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDTS-----QNTVTSA------IVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 838
             ++  KI V+G    GKTAL VR+LT +FI DY      +Y  Q  +    + + + DT      +N+++ +      I  AD V+IV++I    S+    +L +HV  + +  +  + + ANK+D+ H + V    G  LA   GC ++E+S   +Y  V   F+V+ K ++ +       E +   +I     P ++D + R
Sbjct:   30 GRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233
The following BLAST results are available for this feature:
BLAST of TCONS_00004102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSLBB3.542e-2027.45Ras-like protein family member 11B OS=Homo sapiens... [more]
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