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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004102 ID=TCONS_00004102|Name=TCONS_00004102|organism=Clytia hemisphaerica|type=transcript|length=1260bp TCGTGACATAATGTTTCCATTCCAAAAAGGCTGATGATTCATAGGGTCTT GTTACAAATGTGATGTTTGGTATGAGGAGTATATAAATTGATTTGATACT GATGAGATGATGTTTACTTTAGTAGaaatgcgttcttaatcttttgaaaT ATCAATTCATTTGGAATTTGTTTCTACCGCGAAAGTATATCAAAGAATGA CAATCAAAGTGGACGCACAACAACAGACCAAAATGAGACTTTCTTCGTCA CCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTGGTGTTGGGTGA AAAATATTGCGGAAAGACAGCGTTGACAGTTCGATATTTAACGGGGAAGT TCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGCA AACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAAA TaCAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATG CTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACAT GTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATC GGACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAG CTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTAT GAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCG ACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATG ACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGA TCTCTGCATTTacctaaagaaaataaagctgtTAAAGTTGGACAAAGTAA AAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTC TCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGG AAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGG GCTGATTGAATTATGTGATTGTCAACACGGcttgaaaattttcagagttt AGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGC TAATAAATTGACtctcaattttcatttttctgtgttttcaccagaaggtt tttctttttttgcaaatggAAGCTGATGTTTTAAGAATCTATAATAACTC TGGTAAACAT Run BLAST on NCBI transcript from alignment at sc0000039:110939..114398- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004102 ID=TCONS_00004102|Name=TCONS_00004102|organism=Clytia hemisphaerica|type=transcript|length=3460bp|location=Sequence derived from alignment at sc0000039:110939..114398- (Clytia hemisphaerica) TCGTGACATAATGTTTCCATTCCAAAAAGGCTGATGATTCATAGGGTCTT
GTTACAAATGTGATGTTTGGTATGAGGAGTATATAAATTGATTTGATACT
GATGAGATGATGTTTACTTTAGTAGGTAGGGGAGTTTAGATCATATGAAG
GGGCCCATTGAAGTTGATGAAGATTCTGAATTTTAGAAAAACAATCAAAT
TTGTAGTATGTAATTTTCAAAAGATTCTAAAACGGGGTTCCGAATTATGA
TTGGCTAAACAAGCTTTTCGATTTGCTTGACGTACCCTAGAGTAGAGATT
GGCGCTGGCACATCGGGTGGTTAGTTATAAGATTAGTCCATAGATAACTT
ATTACTCAAAATAGTTTAAGATTATGCACCNTAAGATTAGTCCATAGATA
ACCTATTAATCAAAAGAGCTTGAGATTTTGCACTTCTGTCTCAATGACCA
AGAGATTAAATGTGTAATGGGAAATATCATTTTAACTGTATATTGAATAA
CTCTATTCATTTTGAGAGAGAATTCCATAATGGTTGCTTTCAGCATGTGC
TACATTGCGAAAGTAAAACCCAAGAGTATTATAACAGACTAGTGGCGTAA
ATAAATCGGTACAGCCGAATAAAGCGCCGAGTTTCAGCCTGACAATCTAG
TAAAACACCATTTTTAAGGCTGGTAGTAGTAGGTCCGACTACTGACAAGC
TTTCTGACGAAAAAGGGATTACGTTACAGAGAAAATGACAATGTCTCAGT
TTGGAACAGTTCGACGGTTGTTTGTTTTTCAGTGAAAAGCAACTATCATT
TTATCAAATATTTTGTTTCCATCATTGGAAGACCCTAGTAAATATAGTTT
TAATGTTGTAGGTATGCAATACAAATAGTGGGATTACTTTCTTATCATCA
CGTCTCGATTTTCAACAAATCTTTTTTTTTCTGCAGAAATGCGTTCTTAA
TCTTTTGAAATATCAATTCATTTGGAATTTGTTTCTACCGCGAAAGTATA
TCAAAGAATGACAATCAAAGTGGACGCACAACAACAGACCAAAATGAGAC
TTTCTTCGTCACCGCTTCCAAGCATCAATAAAAAGACTTTTAAAATCGTG
GTGTTGGGTGAAAAATATTGCGGAAAGACAGGTAAGTTGGATCCAATCAC
ATCTAGCTGACTTTTTTAAATATTGATATGCCTCGTGATTATACTTCGCA
GTAAAAGCCAAAAGCTGATACAGGCTAGATCTTTATTGGTCAATTTAAGT
CAATTTTGAACTTTTACAAAGGCTGCGATCACCACGTTGTAGAGAACTGC
GACATTTGTTCCGGAAAAATCTTGGAATCAGTATCAAAAAATTAGATGCA
CGTAGGTGTCTAAAATATGACCGGCAACCAGTATTGAATATCTTGAAACC
AAAAAAATATGACCAGCAAATACGAGCAAATATATCATTTTTTGATGATT
CATGAAACATCAGGCATTGCATCCCTCTTTGATAAAACAACATTGTGGGT
TGACCCAAAACATCATGACAAACCCATACAACATAAATCAGTTATGTCAG
AAGGAGAAAGAAACCCTGCTGATGGAAAAATACCTTCCTCCGCAGAAAAT
GTATGGACGGAGGTTTGTGTACAAGATAAACAAGCACGGATTAGGATATA
TGATTATGCAATGTTAGCTTTCTCAANTGCTGATGGAAAAATACCTTCCT
CCGCAGAAAATGTATGGACGGAGGTTTGTGTACGAGATAAACAAGTACGG
ATTAGGATATATGATTATGCAATGTTTGCTTTCTCAAGTAATCAGTAAAA
CTAAATCTCGTGTTAAACGTTATTATAAACAGCATTTTTTCAAGATTCTT
GATTTTTTGTCTACTACTTGTCTGTAGATCAGGTCTGACTTTGTAAAACT
AACTAGAACATCAAAGTTATTATTGACTAAGAACCTAAATTTTGCTGATT
GAATCAAGTGAGCATCTGTACCATACCTATGTTAGTGCTAACCGAAGCTA
AGTTGAGTAAATGTCTGCAAATGATTCAATTTAAGGGACTTTGTAGAAAG
ATTTTTAAATTACTTCCACAACTATAAAACTGGGAAACACCAGAAAGTGG
AGATACTAGATCCAAAAAAGATAGAGACTACTCTAAAAAGTCTTCACAAC
ATCCCTGTAAGTTTCAAATGTAAATAACAAAAATACAACCATACAGTACC
CACTTCAACTAAATTTCAAAATTCGATATGGAAGCAAAGTGATATATTTT
CACATTTTTGACTCGTTTTAGCGTTGACAGTTCGATATTTAACGGGGAAG
TTCATTTACGATTATGCGACCGGTGAAGATTTCATTTACCCTCATCAAGC
AAACTTGAACAACGGAGATGTCCAAATTAATATTGTCGATACTTCACAAA
ATGTAAGTAGAATAGAAAACACCCCTGTCTCAAACAGTGTAACAGTACAT
AAAAGTTTCACCGAGGCAAAAGGAGTCCTTGAGCGCTTGCCCCTTTCAGA
AATGACTGGTAGCAGTTGAAACTTTTAGCTTTAGTTTCCAGGGTGAGCTT
ATCTGTATTTCTTACACATTTTCTCCTTTTCCATACAACCCTTACTATAA
AAATGAACTACATATTTCAAAACTTAGGAACAGTATTTTTGATATTTTCA
GACAGTGACCAGCGCGATTGTGGATGCAGATGGAGTGATCATTGTGTATG
CTATCAACAGTAAATCAAGTTTCCACAGAGCTGAAGAACTTTTAAAACAT
GTTGTTGCTGTCAGTTGTAAACCTTCTATCGCGATCGCTGCTAATAAATC
GGACATGTGGCATTATCGGACAGTTATGAGATCAGATGGTGAATATCTAG
CTAAACAATACGGATGTAAATATTTCGAACTTTCCGCGTTGACGGATTAT
GAGAAGGTTCAGCGCATGTTTAATGTCATGTTAAAATTGATGAATGATCG
ACATACGGATAAAGAACTTATTGAGAGTAAATCTGCTATTGTGATTAATG
ACAGTTCACCGCCCCCGATTGAAGACTTTGAAGGGCGTCGAAGGGCGAGA
TCTCTGCATTTACCTAAAGAAAATAAAGCTGTTAAAGTTGGACAAAGTAA
AAGCCCGATATTATTCCGAAAATTGATTCGATCTTGGAATCAATCGAGTC
TCAGTCGATCTAAATCAACAGAAAAGCTGTTTTAGATTTTGACTTGAGGG
AAGAGAATCTATTCAAAGATGTTCAATGGTTAAAGATTGCCAGATTTTGG
GCTGATTGAATTATGTGATTGTCAACACGGCTTGAAAATTTTCAGAGTTT
AGAATCCGAAGAAAGTTGACCTTGTAAGCTATAGATTTTAGAGTATTTGC
TAATAAATTGACTCTCAATTTTCATTTTTCTGTGTTTTCACCAGAAGGTT
TTTCTTTTTTTGCAAATGGAAGCTGATGTTTTAAGAATCTATAATAACTC
TGGTAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004102-exon-sc0000039-1575043694:114274..114398 | TCONS_00004102-exon-sc0000039-1575043694:114274..114398 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1575043694:113268..113462 | TCONS_00004102-exon-sc0000039-1575043694:113268..113462 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1575043694:111997..112127 | TCONS_00004102-exon-sc0000039-1575043694:111997..112127 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1575043694:110939..111747 | TCONS_00004102-exon-sc0000039-1575043694:110939..111747 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1510915933:114274..114398 | TCONS_00004102-exon-sc0000039-1510915933:114274..114398 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1510915933:113268..113462 | TCONS_00004102-exon-sc0000039-1510915933:113268..113462 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1510915933:111997..112127 | TCONS_00004102-exon-sc0000039-1510915933:111997..112127 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1510915933:110939..111747 | TCONS_00004102-exon-sc0000039-1510915933:110939..111747 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1491911889:114274..114398 | TCONS_00004102-exon-sc0000039-1491911889:114274..114398 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1491911889:113268..113462 | TCONS_00004102-exon-sc0000039-1491911889:113268..113462 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1491911889:111997..112127 | TCONS_00004102-exon-sc0000039-1491911889:111997..112127 | Clytia hemisphaerica | exon |
TCONS_00004102-exon-sc0000039-1491911889:110939..111747 | TCONS_00004102-exon-sc0000039-1491911889:110939..111747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000039 | supercontig | sc0000039:110939..114398 - |
Blast
BLAST of TCONS_00004102 vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.542e-20 Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 2
Query: 266 NKKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDTS-----QNTVTSA------IVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 838
++ KI V+G GKTAL VR+LT +FI DY +Y Q + + + + DT +N+++ + I AD V+IV++I S+ +L +HV + + + + + ANK+D+ H + V G LA GC ++E+S +Y V F+V+ K ++ + E + +I P ++D + R
Sbjct: 30 GRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233
The following BLAST results are available for this feature:
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