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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004007 ID=TCONS_00004007|Name=TCONS_00004007|organism=Clytia hemisphaerica|type=transcript|length=2187bp
ATCAGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcgg
ctcaaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAG
AGAAACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCA
TTCAATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGA
GTTTCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCG
TTTCAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAG
TTACAAAGCGACTCCGAACACACTTCAATCACCTTTCGGAAACCCTCAAC
CACAATCGTCTTACAGCTCATCATCACACAATATGGCACCATCTGGCTAT
GGGAATCAGCAACAATCACAATCAGGAGGGTACAATGCTCCTCAACCTCA
AGGAACTCAACTGGTAAAGGGTGCTGATGCTGGCGTCAAATTAGAAGCTC
TAAAGAAATGGACCATGTCAACGTACAAATACACCAAACAAATGGTGTCC
GAAAAAATGGGCCGTCGAACACGGACCGTGGATACCGAATTGGAAAAACA
CATCCAAGGCTTAAAAGAAATGCAACTGCGCTACACCAATTTGTTAAAAC
TTTCTAAACaatttcaaagtcaatttcaaaatattttggtcacaCAGAAG
CTGATGGGTGAAGCATTCAACGAGCTAGCTGTCAAGTCTCCTGATTTGCA
GGaagaattttcacaaaatgcTGAATTACAGAAAGTCGTTTCTAAAAATG
GTGACGCCTTGATTTCAGCTCTTACATTTTTCAACGAGAATCTTTGGACT
TTATCGACTAAAACGATCGAGGACACGATTCAAACGATTCGAGATTACGA
GAATTGTCGTATCGAGTATGATGCCTACCGGACGGATTTGGAAGCACATG
AGGCGGTCGGACAATCAATGAAAACGGAACAAGCTAGAAAAGaattcaac
gagcacaaagAGAAATTCGAATCTTTACGAAACAATCttcaaattaaaat
gaaatttcttgaaGAGAATAAGGTGAAGGTAATGCGAAAACAATTATTGA
TTCTGCACAACGCCCTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTG
GAAAAAACGATGAAAGAATTTCACATTCGTGTCATGAACAAAGGCGAAGA
AGCTTCCTTCCTTGAAACGCACTAAATTGAACTTGTTCCATTCAAAAAAT
CTTCTAGTTACGATATGATATTTTTGGATNCTGAACTTGTTGCATTCAAA
AAATCTTCTAGCTACGATAtgatatttttggattttgaaaccGGCATTAA
CTTTTTATTATGTAAAGAATTTTCACAAATTGCTGGTATTGAGGCAGGCT
CTTTGcaggaaaaaaaaccgagtcAATTACAATTGGCACCTCTTACAATG
GCCATTTTGATAACGGCTCTTACGGTATTGCGCCGCTGGTGAAAACCATA
TCATTGAATCACATATTTGTGATGATGAACTTTCAGGTTAACTAACCTAA
CCACTCACTGCACTCTGCCTACACCTGTATAATCAATCAAACTATCATTA
TCCTATTTATGTTTGGAATTAGataattttctcaatttttttttaattat
tttcttgGATACGTATTGGAAATTTATGAGTGATTTTGTGTGACGTTTAT
GTTTTCCCCTTTtgaaattaaatcaaatttGCTCAAAGAATAAGTCAAGA
ATTGTAAATCAACTTTACGACTCGATTGTCCGCTGCTTTAGATCACCTTC
CAAGTTTATTAGAACACAAATAAAAGACTCAGCTCAATAATATTTGTTAT
TCTGTTTCAGGCtagtttatgtttctttttggtatttaatttatttcaga
ttttgattgtttgtttctttcctccaccaaaatattttttgtgtctTTGG
ATGTAAATATTccaatttttttagaacaaataataattattataaagaaa
acacATTTGTAAGCTTTCAAAATACTATTCTTGCCATCAGCTGAATTTTA
GAAAGAATGGCGTTCTTTTTACCATTATTCTACACAATTCCGAGGGCCAA
AGTCCGATGACGGAAAAAGGCTCGAAAAAAGGTCTTATCCATgattacta
aaaataaaaCTGAGTTTCAGTGGCACTGAGAACAAAG Run BLAST on NCBI protein sequence of TCONS_00004007-protein >TCONS_00004007-protein ID=TCONS_00004007-protein|Name=TCONS_00004007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
SEIAKRGCVVLYFKMAAQGEGNIGGYIPPTFPQRNGYERETPILDSGPDH
SMEDMIKEATDMQSGSSFNRSRLRMQTDEGVSPFQQPAAQPNSSYSSSSS
YKATPNTLQSPFGNPQPQSSYSSSSHNMAPSGYGNQQQSQSGGYNAPQPQ
GTQLVKGADAGVKLEALKKWTMSTYKYTKQMVSEKMGRRTRTVDTELEKH
IQGLKEMQLRYTNLLKLSKQFQSQFQNILVTQKLMGEAFNELAVKSPDLQ
EEFSQNAELQKVVSKNGDALISALTFFNENLWTLSTKTIEDTIQTIRDYE
NCRIEYDAYRTDLEAHEAVGQSMKTEQARKEFNEHKEKFESLRNNLQIKM
KFLEENKVKVMRKQLLILHNALAAYFSGNKDELEKTMKEFHIRVMNKGEE
ASFLETH Run BLAST on NCBI transcript from alignment at sc0000039:81377..92675+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004007 ID=TCONS_00004007|Name=TCONS_00004007|organism=Clytia hemisphaerica|type=transcript|length=11299bp|location=Sequence derived from alignment at sc0000039:81377..92675+ (Clytia hemisphaerica)
ATCAGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcgg
ctcaaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAG
AGAAACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCA
TTCAATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGA
GTTTCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCG
TTTCAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAG
TTACAAAGGTAGATTTCTCCTCTGACTaacatttttaatttaaaaggttt
tttacTAACAAACATGTTCAGGTAAAAGATTTATAAGTCCTCTTGATTTT
AGACTTTTAGTCAGTTTAGTTTAATATATAATAAAccaaacaagacgact
taaagtcgaaaatttcgcataatacttgaacatcaacgacgaagacgcat
gaaacgtgactcctgcagcattatgcattttgaatgaagcgctACACGAG
GTcatagataccctgttttttatgaaaaatcttaatccattaaaaaaaga
ttccttaaaaaatgcgactaaagaattccattctataaagcgtaaacaaa
atctttcaattcagagaactgcaatatacacttgagaaaaataattttaa
atgtttttgaaaatgaagaagaaaaaatgaacttttcattcttcggtgcc
agaaacctcattttgggctttgaaggaacttgtgataaagacttcattca
cttgcgcaaagtttatatcaacttctttctataaacagtagaatttatcT
AAAACTGAGAAAAATGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNgctagtcagaaaaatctgttgtatactactttctgatatgaatg
atggcccaccaccatcaaaatcatttgacttttccagaaaaaaattgaat
attggggggggggaagggtataacattttttggaaatttaccctggacat
tgtgacttttgatcccccggacagcaggtctaacccacCCCGCCCCAGAC
ATCAGttgagtagttgagctccagcttctggactaaAAAATGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncaatcagcttaaattcgctttcattgtcctttgactttcaaaaaatagt
atttaaaaattatgaatttataataattacaaaaaacaaaaagtttgata
cttctagggaaatattcaataaattcctagtttcaattttcagcgGGTGT
TTTTCTAGGGGTTCGTTTAttgcgcaatttttgcgtcacacaaactttct
cggccgctcgtaataattatgcattgccaaatttagttctccattgtcaa
gtcaggcagtgtagacctaactcttcatacaaaaattacgggaaacgcat
atttggactttgtaccctatgctgcactcaagcacttgtgccaaaatccc
gcaaaggcgggacaaaaatcagttttttgaagtttgcaaaaaaacgccac
atagaagatctttcaaattcagtatgtgaatagagcagtaaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCGCGCCGCGCGCCAcgcgggagctcgg
gcgctaTGCGAGAGTTCtcagctcaatcctcggaccgcgctaaaaatggt
aaactgagctgtgatagatcatttcgatgcaagttgttggaatgtttaca
aggctcttgacagaaaattgtttgttttattgtcaatgatgacagtgtgg
ttattaattttgttagatctgacaaattgatgtttgtaagtgcactttat
agttttgattcccattgaagaatcatattctggttttcatgttattagat
gctgttttagagctttaggtctacactgtcagGATTGATGGTGACGttac
ctaagcataaaaaagaaaggatttcgtcactTTTATGCATGTATGAATTT
GAGAGATATTCACACTTTTCATAGACTAGTCGGAATGCTTTCTTTTACTC
Gctggattgatggtaacttttcatcttcattatttttaaaatgaagcaca
aacgaaaaaaacaaaacttcagaaagttgcgtatttccagtgagtaaaca
attctgacaattaacaaaattgatgatgatgattttttttcggtcaggca
aatgtctcgtattgggggttctagtcttgacccctaagcctatgCGAGAT
TGAAgagtttgggtaaacgagacaaaactccaaaaaagctggtgttttga
agcgcttccgtgcaatcgaaatatcgctgtttgtgacgcactgatcCACG
CAACAAGAAAATCCCAGGAGTCCGGGGAATTAGCAGGGTCGTCTGTAAGC
ATGCAATTGCACTGCTGAAATTTACGCCTAGGTGCAATTGCAGGTTTACA
AATCCAGCCCAGGTTAAGATTGCTTGAGCAGATAGAAGAgttctcatttt
caaaatcgTGCAAATGCAGTGAGGCGggaatttcgatttttgaggattac
gattttaccagttttttagcgatttttgccttgctaacccaaatcttgca
acatctttaccttaaggaagatcgaaattagagtttttcagcgttctgaa
aaaaacgcatagcagaaattttttcatcttcacaggatatattctcaaca
acaaaatacatcttttggtctttgggtttgtttctgacgttttttcttca
aagaatatcgatcactttccttttccccttgagcgcgtgagaaaaaaatg
attagctcacGTTTtggcgcgggcgaataaagatgaggcggcaatcttgc
actgagggtgctacttagtttccgccctattttgcgcccacgatagaatg
gtctaaacacgggggtattccaaatgataaactatgtcattctgtaagtg
tttattttctgagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtaaaaaaattctatgtttacaaacattccctctcc
aagttgaacaataaactattgcaagaactcttgaaacaaaacatccaACA
ATGGCTTTAAAATGTCACGATGTTAAtcaatgtgataaaaaaagtgtgag
ttgtaaaaattaTCAGCAATTttaaataattaccttttattctgaatccg
ttgtTTGTGTTTAAAACCTTAACAAATGTTATTTGATTTAATGGATTCAA
tatatcaaatctctcagtttagttgacgcTTTGGTATCTGTGTTGCACCA
cacagcaaaaggtttgtttttattttagtttgtatctttgaaagacccca
tcagaattaggcagggctgttggaTTTAGGACCCCTCacaatagtatatt
gaatattattaacttatttatttaagtatttttgagcgcaaatttaaata
tatggttaaataaaaaacaaatgataacagttctgtttatcctaaaaccc
ccgggaaaagttatTTTGcagacttagctattttacaaatcttggaattc
cgatacataacccgattggttaatttcggaacagcttcaagaaagtcata
atgacagataattttaaaggtttcagaggaaatgtgtgtaatttatcgat
gttgatggcttgttgatttttaaagaaataagatAACAGGTGtaactttt
tctaatcctggattatcgaggttccagctacactgaaatACATGGCCAAA
AGGgaaaaattctataaaaaattCTGAGTAAGATAAACCCAAGGctttca
aaattcaacaaagtAGTCAGAagcaaataaagttttttcaaatgaaaGAC
TAGTTAGGCATGCATTTAGATGCTTACTGCTCATTCAGATTTATAGTGAA
AAGTGTGTAATTGCATCCAAAAATTCTTACATTTTCTATAGCCATATAAT
TGCGCGTTAAGATCTCATAAGCTAAGGGTACAATAGTTGTTTTAGAGAAC
GTGACAGCCTAttaaataacaaattactccacatacattactttccctta
gccaataaaaacgtgataaattatcttgtctctaggtaactgttgtggag
taattagttattcaataggtCGTCGCATTCTCCAAATTAAGAAAGTTGAA
TtggggctattccaaaaaaatcttACAGGGGTATTGAGGAACTTTTTCCT
ATGACAAATATTGTAGGCCATTGCACTCAGTCAAGTCAGGCCTGTTCTTC
TTAAAATAGAATACAACACAATATGCGTACAGATGTGCAACCATATGCTT
CAGATTGCATATTTTCGCCCGCgttcctttagagctttagcataCTGGGC
CAGAAAATGCACAATCTGCTCTGAGGTTATCAGATACAAGGCCAAAAGCT
TTATGTtatgaattttatattttaatgaaaacaaaaataaagcttCTATG
GTTTAAAACTACAAATGGTTGTTGGGacaggggggtcggtagtaaaatct
cagacatatatgagtagtaaaaggatttttacgaatttttacataccacc
acccagactctttgAAGAGTTATTTTACTATCCTGgtagcaaacaacttt
ccaacagaaaattttttcaagttatataaattttcagatttttcagaaaa
gtcatccaaaaaattaaaagaattataaaaatagctaaaatttgctaatt
ttaccagttttaactacccaggttgtaaaattttttcaacatttaacaca
tagataccacccattttagtatttaactaccctgggtagtaaattttttt
ttcgattttttggtCACACCatcaccgtagtaaacgtcattatgtctgag
attttactaccgacccccccccccccggttggGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGCTGGTTGGGATCAAAT
TGTAAGACCAAACTTTAGTGATTTTAAGGAGGGGTAGTGTCTAATAGCCA
AATgctaaaagggcatgaaaaaggAGACTGATCCCTGATTTTGTCAAACA
GATAAtgtttttcttccaaaattggGCTACAAACATTTTGAGAAttactg
tgcaaaaaatctgaaaatctgtCGAGAAGAAAATAGAGGAGCCTGTTTTA
CGCCGgctttcggctgttccggcaatttttaaggagttgaaaaatgattt
ttctggTAATCAAACCAACGATGCAAAACTTTGAGCATCACCATGAAATA
GTTTTGTTTGTGAAGAAAGAATCAAGTCAAGTAGATCAAGAGagatttca
ctttcgtttttatgTACTCGTCTTTGTATTCGTGTAAATAGTACTTTTCA
AAGCACTTAATTtctgtttgaaaatttaaaagattactcacttttttcga
aatttaagaTTTGTGATGATGTGATGATGTTACATGTAGATATAGCGCAA
TAAGTTTCAAGAAAGGTGTACTCTGAGTAGAAAGGGAAGGGCTCCTGTCC
ATCCCACCCCGCATATAATGAACCCCCTGAAAgctgggggctggacccct
ctggGACCCATCTGCACACTATGCCCCGTTCAAAACCCCCTCTTTAGTCG
GCATCAAAACCCCCAGCCTTAAGATTTAGGAAACTGCATTGGTCTCCATT
TTACAGGGTGAGGCTCGAATTAGACGAGGGAAAAGTTGGGAAGGCAGCCT
TGAACGAAGTGAATATAATGCAAGAAAACTCCTTGACACATTGAGCTATG
ATTATTTCTAAAAgggaaaatatctttcaaaagtGCTAAGGCTTCTATTC
ATATCTATTAGAACCCCAGATAACCTCGAATTATTCCCAAAACATGGGAA
AAATGTTAGTGGTATTATGGTCGTTTTGGAGGCTACATTTTTCATACAGT
CATTATTTTGAGgcgaatcaaaagttattgcacGTACCCTACAGTTTAGA
GAAACAATATTGTTTAGTTAATTAAAAGCGGATTTGATATTATGATAGAG
AGAAGTCTAAGCGAAAATCTCATTACATTCTATTACATATAACATATAAT
AGCATAACCTAACATTCTTTACACTTTGCATTTCACTAAAACACTACTTA
CACAATTTCGCATACACGAAATATACTTACCATAAAGGAGAAATTTACAC
TTGCTTTTTATGAAGCTTCTAAATCAAGCACATATTTTACTCATCAAACA
CCTCATACATGCAACGCAGTTTGTTCAGTGTTTCTTGTGTATCGCCAGAG
AATGCATTTTACAAGATGTCTTGAATTTTCTCAACTGGAAAAGATAGCGA
TATTTCCATAACCTGAGCAAAACTTTGAACATTgatatcttatttttttt
gagattttcttgacccccttttttctttagtttttcaaatatttttttcc
tttcattGTGGTAGATATATAGTTTCGTTGAATTATTCGACCATCTTGTC
CTGGTGATTCATAACCACGTGTCCTCTCTCTTTCTCCTCTTCCATCAACA
CAAATTTCGTTATCTCAATATTTGCGCTATAACAAGAGAGACTTCTGTTT
GATCGATTTTTATCGCAAcgtaaagagaaaaaagaagcTCTTTGTTCATG
TCTATAATATTTCTATAGATGTGTTaagctaattttcttcaaaataatat
AGTGTTTTTTACATTAAAAGATTCTACGCGTAATATTATAAGGTTCGTGT
TGTGTGGCAGAGAATTTCATGTAGAAGAGGGGAAAACATTAGAATTTTCA
CTGAACTAACTTGTCTGTCTTGATTTCTTCAGCGACTCCGAACACACTTC
AATCACCTTTCGGAAACCCTCAACCACAATCGTCTTACAGCTCATCATCA
CACAATATGGCACCATCTGGCTATGGGAATCAGCAACAATCACAATCAGG
AGGGTACAATGCTCCTCAACCTCAAGGAACTCAACTGGTAAAGGGTGCTG
ATGCTGGCGTCAAATTAGAAGCTCTAAAGAAATGGACCATGTCAACGTAC
AAATACACCAAACAAATGGTGTCCGAAAAAATGGGCCGTCGAACACGGAC
CGTGGATACCGAATTGGAAAAACACATCCAAGGCTTAAAAGAAATGCAAC
TGCGCTACACCAATTTGTTAAAACTTTCTAAACaatttcaaagtcaattt
caaaatattttggtcacaCAGAAGCTGATGGGTGAAGCATTCAACGAGCT
AGCTGTCAAGTCTCCTGATTTGCAGGaagaattttcacaaaatgcTGAAT
TACAGAAAGTCGTTTCTAAAAATGGTGACGCCTTGATTTCAGCTCTTACA
TTTTTCAACGAGAATCTTTGGACTTTATCGACTAAAACGATCGAGGACAC
GATTCAAACGATTCGAGATTACGAGAATTGTCGTATCGAGTATGATGCCT
ACCGGACGGATTTGGAAGCACATGAGGCGGTCGGACAATCAATGAAAACG
GAACAAGCTAGAAAAGaattcaacgagcacaaagAGAAATTCGAATCTTT
ACGAAACAATCttcaaattaaaatgaaatttcttgaaGAGAATAAGGTAG
GTTTTGGACGTTGATTCTCTCTTATATACACTAATCACCCCTCTCTTCTT
TATCCAGtcgttttatgtttttattttgcacTTTCTTAATACGTGTCTGG
ATGCTCTTAGCTTATATTTCTATCCTAACAGTGCGATTTATAATTACTtg
ttttttgatcattttttacTGATAAGTTTTTTCACAGAttcgaaaagatt
tttttacgtttttcttgGCTTTGCTGTTATAAACTTTGATTCCTTGAAAT
AACTTTAGGTGAAGGTAATGCGAAAACAATTATTGATTCTGCACAACGCC
CTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTGGAAAAAACGATGAA
AGAATTTCACATTCGTGTCATGAACAAAGGCGAAGAAGCTTCCTTCCTTG
AAACGCACTAAATTGAACTTGTTCCATTCAAAAAATCTTCTAGTTACGAT
ATGATATTTTTGGATNCTGAACTTGTTGCATTCAAAAAATCTTCTAGCTA
CGATAtgatatttttggattttgaaaccGGCATTAACTTTTTATTATGTA
AAGAATTTTCACAAATTGCTGGTATTGAGGCAGGCTCTTTGcaggaaaaa
aaaccgagtcAATTACAATTGGCACCTCTTACAATGGCCATTTTGATAAC
GGCTCTTACGGTATTGCGCCGCTGGTGAAAACCATATCATTGAATCACAT
ATTTGTGATGATGAACTTTCAGGTTAACTAACCTAACCACTCACTGCACT
CTGCCTACACCTGTATAATCAATCAAACTATCATTATCCTATTTATGTTT
GGAATTAGataattttctcaatttttttttaattattttcttgGATACGT
ATTGGAAATTTATGAGTGATTTTGTGTGACGTTTATGTTTTCCCCTTTtg
aaattaaatcaaatttGCTCAAAGAATAAGTCAAGAATTGTAAATCAACT
TTACGACTCGATTGTCCGCTGCTTTAGATCACCTTCCAAGTTTATTAGAA
CACAAATAAAAGACTCAGCTCAATAATATTTGTTATTCTGTTTCAGGCta
gtttatgtttctttttggtatttaatttatttcagattttgattgtttgt
ttctttcctccaccaaaatattttttgtgtctTTGGATGTAAATATTcca
atttttttagaacaaataataattattataaagaaaacacATTTGTAAGC
TTTCAAAATACTATTCTTGCCATCAGCTGAATTTTAGAAAGAATGGCGTT
CTTTTTACCATTATTCTACACAATTCCGAGGGCCAAAGTCCGATGACGGA
AAAAGGCTCGAAAAAAGGTCTTATCCATgattactaaaaataaaaatgag
tttCAGTGGCACCGAGNAggctcgaaaaaagatcttatccattattacta
aaaataaaaatgttcggtAACCTGAGTTTCAGTGGCACTGAGAACAAAG Coding sequence (CDS) from alignment at sc0000039:81377..92675+ >TCONS_00004007 ID=TCONS_00004007|Name=TCONS_00004007|organism=Clytia hemisphaerica|type=CDS|length=3672bp|location=Sequence derived from alignment at sc0000039:81377..92675+ (Clytia hemisphaerica)
TCAGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcggc
tcaaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAGA
GAAACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCAT
TCAATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGAG
TTTCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCGT
TTCAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAGT
TACAAAGCGACTCCGAACACACTTCAATCACCTTTCGGAAACCCTCAACC
ACAATCGTCTTACAGCTCATCATCACACAATATGGCACCATCTGGCTATG
GGAATCAGCAACAATCACAATCAGGAGGGTACAATGCTCCTCAACCTCAA
GGAACTCAACTGGTAAAGGGTGCTGATGCTGGCGTCAAATTAGAAGCTCT
AAAGAAATGGACCATGTCAACGTACAAATACACCAAACAAATGGTGTCCG
AAAAAATGGGCCGTCGAACACGGACCGTGGATACCGAATTGGAAAAACAC
ATCCAAGGCTTAAAAGAAATGCAACTGCGCTACACCAATTTGTTAAAACT
TTCTAAACaatttcaaagtcaatttcaaaatattttggtcacaCAGAAGC
TGATGGGTGAAGCATTCAACGAGCTAGCTGTCAAGTCTCCTGATTTGCAG
GaagaattttcacaaaatgcTGAATTACAGAAAGTCGTTTCTAAAAATGG
TGACGCCTTGATTTCAGCTCTTACATTTTTCAACGAGAATCTTTGGACTT
TATCGACTAAAACGATCGAGGACACGATTCAAACGATTCGAGATTACGAG
AATTGTCGTATCGAGTATGATGCCTACCGGACGGATTTGGAAGCACATGA
GGCGGTCGGACAATCAATGAAAACGGAACAAGCTAGAAAAGaattcaacg
agcacaaagAGAAATTCGAATCTTTACGAAACAATCttcaaattaaaatg
aaatttcttgaaGAGAATAAGGTGAAGGTAATGCGAAAACAATTATTGAT
TCTGCACAACGCCCTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTGG
AAAAAACGATGAAAGAATTTCACATTCGTGTCATGAACAAAGGCGAAGAA
GCTTCCTTCCTTGAAACGCACTAATCAGAAATTGCAAAGCGCGGATGTGT
TGTGTTAtatttcaagatggcggctcaaggcGAGGGAAATATCGGTGGGT
ATATTCCTCCAACTTTTCCCCAGAGAAACGGTTATGAGCGAGAGACCCCG
ATCCTAGACTCAGGTCCAGATCATTCAATGGAAGACATGATAAAAGAGGC
AACTGATATGCAATCAGGATCGAGTTTCAACCGATCCAGGCTTCGAATGC
AAACTGATGAAGGTGTATCACCGTTTCAACAACCTGCAGCGCAACCAAAC
TCTTCTTACTCCTCTTCTAGTAGTTACAAAGCGACTCCGAACACACTTCA
ATCACCTTTCGGAAACCCTCAACCACAATCGTCTTACAGCTCATCATCAC
ACAATATGGCACCATCTGGCTATGGGAATCAGCAACAATCACAATCAGGA
GGGTACAATGCTCCTCAACCTCAAGGAACTCAACTGGTAAAGGGTGCTGA
TGCTGGCGTCAAATTAGAAGCTCTAAAGAAATGGACCATGTCAACGTACA
AATACACCAAACAAATGGTGTCCGAAAAAATGGGCCGTCGAACACGGACC
GTGGATACCGAATTGGAAAAACACATCCAAGGCTTAAAAGAAATGCAACT
GCGCTACACCAATTTGTTAAAACTTTCTAAACaatttcaaagtcaatttc
aaaatattttggtcacaCAGAAGCTGATGGGTGAAGCATTCAACGAGCTA
GCTGTCAAGTCTCCTGATTTGCAGGaagaattttcacaaaatgcTGAATT
ACAGAAAGTCGTTTCTAAAAATGGTGACGCCTTGATTTCAGCTCTTACAT
TTTTCAACGAGAATCTTTGGACTTTATCGACTAAAACGATCGAGGACACG
ATTCAAACGATTCGAGATTACGAGAATTGTCGTATCGAGTATGATGCCTA
CCGGACGGATTTGGAAGCACATGAGGCGGTCGGACAATCAATGAAAACGG
AACAAGCTAGAAAAGaattcaacgagcacaaagAGAAATTCGAATCTTTA
CGAAACAATCttcaaattaaaatgaaatttcttgaaGAGAATAAGGTGAA
GGTAATGCGAAAACAATTATTGATTCTGCACAACGCCCTGGCTGCCTACT
TTTCTGGTAACAAGGACGAACTGGAAAAAACGATGAAAGAATTTCACATT
CGTGTCATGAACAAAGGCGAAGAAGCTTCCTTCCTTGAAACGCACTAATC
AGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcggctc
aaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAGAGA
AACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCATTC
AATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGAGTT
TCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCGTTT
CAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAGTTA
CAAAGCGACTCCGAACACACTTCAATCACCTTTCGGAAACCCTCAACCAC
AATCGTCTTACAGCTCATCATCACACAATATGGCACCATCTGGCTATGGG
AATCAGCAACAATCACAATCAGGAGGGTACAATGCTCCTCAACCTCAAGG
AACTCAACTGGTAAAGGGTGCTGATGCTGGCGTCAAATTAGAAGCTCTAA
AGAAATGGACCATGTCAACGTACAAATACACCAAACAAATGGTGTCCGAA
AAAATGGGCCGTCGAACACGGACCGTGGATACCGAATTGGAAAAACACAT
CCAAGGCTTAAAAGAAATGCAACTGCGCTACACCAATTTGTTAAAACTTT
CTAAACaatttcaaagtcaatttcaaaatattttggtcacaCAGAAGCTG
ATGGGTGAAGCATTCAACGAGCTAGCTGTCAAGTCTCCTGATTTGCAGGa
agaattttcacaaaatgcTGAATTACAGAAAGTCGTTTCTAAAAATGGTG
ACGCCTTGATTTCAGCTCTTACATTTTTCAACGAGAATCTTTGGACTTTA
TCGACTAAAACGATCGAGGACACGATTCAAACGATTCGAGATTACGAGAA
TTGTCGTATCGAGTATGATGCCTACCGGACGGATTTGGAAGCACATGAGG
CGGTCGGACAATCAATGAAAACGGAACAAGCTAGAAAAGaattcaacgag
cacaaagAGAAATTCGAATCTTTACGAAACAATCttcaaattaaaatgaa
atttcttgaaGAGAATAAGGTGAAGGTAATGCGAAAACAATTATTGATTC
TGCACAACGCCCTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTGGAA
AAAACGATGAAAGAATTTCACATTCGTGTCATGAACAAAGGCGAAGAAGC
TTCCTTCCTTGAAACGCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004007-exon-sc0000039-1491911889:81377..81684 | TCONS_00004007-exon-sc0000039-1491911889:81377..81684 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1510915933:81377..81684 | TCONS_00004007-exon-sc0000039-1510915933:81377..81684 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1575043694:81377..81684 | TCONS_00004007-exon-sc0000039-1575043694:81377..81684 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1491911889:90459..91222 | TCONS_00004007-exon-sc0000039-1491911889:90459..91222 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1510915933:90459..91222 | TCONS_00004007-exon-sc0000039-1510915933:90459..91222 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1575043694:90459..91222 | TCONS_00004007-exon-sc0000039-1575043694:90459..91222 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1491911889:91485..92571 | TCONS_00004007-exon-sc0000039-1491911889:91485..92571 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1510915933:91485..92571 | TCONS_00004007-exon-sc0000039-1510915933:91485..92571 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1575043694:91485..92571 | TCONS_00004007-exon-sc0000039-1575043694:91485..92571 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1491911889:92648..92675 | TCONS_00004007-exon-sc0000039-1491911889:92648..92675 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1510915933:92648..92675 | TCONS_00004007-exon-sc0000039-1510915933:92648..92675 | Clytia hemisphaerica | exon |
| TCONS_00004007-exon-sc0000039-1575043694:92648..92675 | TCONS_00004007-exon-sc0000039-1575043694:92648..92675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:81377..92675 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019904 | protein domain specific binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0019904 |
protein domain specific binding |
Blast
BLAST of TCONS_00004007 vs. Swiss-Prot (Human)
Match: ARFP1 (Arfaptin-1 OS=Homo sapiens GN=ARFIP1 PE=1 SV=2) HSP 1 Score: 248.825 bits (634), Expect = 1.299e-74 Identity = 120/248 (48.39%), Postives = 183/248 (73.79%), Query Frame = 2
Query: 488 KLEALKKWTMSTYKYTKQMVSEKMGRRTRTVDTELEKHIQGLKEMQLRYTNLLKLSKQFQSQFQNILVTQKLMGEAFNELAVKSPDLQEEFSQNAELQKVVSKNGDALISALTFFNENLWTLSTKTIEDTIQTIRDYENCRIEYDAYRTDLE----AHEAVGQSMKTEQARKEFNEHKEKFESLRNNLQIKMKFLEENKVKVMRKQLLILHNALAAYFSGNKDELEKTMKEFHIRVMNKGEEA-SFLE 1216
KLE ++KW+++TYK T+Q++SEK+GR +RTVD ELE I L++ + +Y N+LKL++ +Q ++ TQ+ +G+AF +L++KS +L EEF NA+ QK+++KNG+ L+ A+ FF ++ TL KTIEDT+ T++ YE+ RIEYDAYRTDLE K EQ++ F HKEK++ +RN++ +K+KFLEENKVKV+ QL++ HNA+AAYF+GN+ +LE+T+K+FHI++ G +A S+LE
Sbjct: 124 KLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLE 371
The following BLAST results are available for this feature:
|
