TCONS_00004007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004007
Unique NameTCONS_00004007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004007 ID=TCONS_00004007|Name=TCONS_00004007|organism=Clytia hemisphaerica|type=transcript|length=2187bp
ATCAGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcgg
ctcaaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAG
AGAAACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCA
TTCAATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGA
GTTTCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCG
TTTCAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAG
TTACAAAGCGACTCCGAACACACTTCAATCACCTTTCGGAAACCCTCAAC
CACAATCGTCTTACAGCTCATCATCACACAATATGGCACCATCTGGCTAT
GGGAATCAGCAACAATCACAATCAGGAGGGTACAATGCTCCTCAACCTCA
AGGAACTCAACTGGTAAAGGGTGCTGATGCTGGCGTCAAATTAGAAGCTC
TAAAGAAATGGACCATGTCAACGTACAAATACACCAAACAAATGGTGTCC
GAAAAAATGGGCCGTCGAACACGGACCGTGGATACCGAATTGGAAAAACA
CATCCAAGGCTTAAAAGAAATGCAACTGCGCTACACCAATTTGTTAAAAC
TTTCTAAACaatttcaaagtcaatttcaaaatattttggtcacaCAGAAG
CTGATGGGTGAAGCATTCAACGAGCTAGCTGTCAAGTCTCCTGATTTGCA
GGaagaattttcacaaaatgcTGAATTACAGAAAGTCGTTTCTAAAAATG
GTGACGCCTTGATTTCAGCTCTTACATTTTTCAACGAGAATCTTTGGACT
TTATCGACTAAAACGATCGAGGACACGATTCAAACGATTCGAGATTACGA
GAATTGTCGTATCGAGTATGATGCCTACCGGACGGATTTGGAAGCACATG
AGGCGGTCGGACAATCAATGAAAACGGAACAAGCTAGAAAAGaattcaac
gagcacaaagAGAAATTCGAATCTTTACGAAACAATCttcaaattaaaat
gaaatttcttgaaGAGAATAAGGTGAAGGTAATGCGAAAACAATTATTGA
TTCTGCACAACGCCCTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTG
GAAAAAACGATGAAAGAATTTCACATTCGTGTCATGAACAAAGGCGAAGA
AGCTTCCTTCCTTGAAACGCACTAAATTGAACTTGTTCCATTCAAAAAAT
CTTCTAGTTACGATATGATATTTTTGGATNCTGAACTTGTTGCATTCAAA
AAATCTTCTAGCTACGATAtgatatttttggattttgaaaccGGCATTAA
CTTTTTATTATGTAAAGAATTTTCACAAATTGCTGGTATTGAGGCAGGCT
CTTTGcaggaaaaaaaaccgagtcAATTACAATTGGCACCTCTTACAATG
GCCATTTTGATAACGGCTCTTACGGTATTGCGCCGCTGGTGAAAACCATA
TCATTGAATCACATATTTGTGATGATGAACTTTCAGGTTAACTAACCTAA
CCACTCACTGCACTCTGCCTACACCTGTATAATCAATCAAACTATCATTA
TCCTATTTATGTTTGGAATTAGataattttctcaatttttttttaattat
tttcttgGATACGTATTGGAAATTTATGAGTGATTTTGTGTGACGTTTAT
GTTTTCCCCTTTtgaaattaaatcaaatttGCTCAAAGAATAAGTCAAGA
ATTGTAAATCAACTTTACGACTCGATTGTCCGCTGCTTTAGATCACCTTC
CAAGTTTATTAGAACACAAATAAAAGACTCAGCTCAATAATATTTGTTAT
TCTGTTTCAGGCtagtttatgtttctttttggtatttaatttatttcaga
ttttgattgtttgtttctttcctccaccaaaatattttttgtgtctTTGG
ATGTAAATATTccaatttttttagaacaaataataattattataaagaaa
acacATTTGTAAGCTTTCAAAATACTATTCTTGCCATCAGCTGAATTTTA
GAAAGAATGGCGTTCTTTTTACCATTATTCTACACAATTCCGAGGGCCAA
AGTCCGATGACGGAAAAAGGCTCGAAAAAAGGTCTTATCCATgattacta
aaaataaaaCTGAGTTTCAGTGGCACTGAGAACAAAG
Run BLAST on NCBI

protein sequence of TCONS_00004007-protein

>TCONS_00004007-protein ID=TCONS_00004007-protein|Name=TCONS_00004007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
SEIAKRGCVVLYFKMAAQGEGNIGGYIPPTFPQRNGYERETPILDSGPDH
SMEDMIKEATDMQSGSSFNRSRLRMQTDEGVSPFQQPAAQPNSSYSSSSS
YKATPNTLQSPFGNPQPQSSYSSSSHNMAPSGYGNQQQSQSGGYNAPQPQ
GTQLVKGADAGVKLEALKKWTMSTYKYTKQMVSEKMGRRTRTVDTELEKH
IQGLKEMQLRYTNLLKLSKQFQSQFQNILVTQKLMGEAFNELAVKSPDLQ
EEFSQNAELQKVVSKNGDALISALTFFNENLWTLSTKTIEDTIQTIRDYE
NCRIEYDAYRTDLEAHEAVGQSMKTEQARKEFNEHKEKFESLRNNLQIKM
KFLEENKVKVMRKQLLILHNALAAYFSGNKDELEKTMKEFHIRVMNKGEE
ASFLETH
Run BLAST on NCBI

transcript from alignment at sc0000039:81377..92675+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004007 ID=TCONS_00004007|Name=TCONS_00004007|organism=Clytia hemisphaerica|type=transcript|length=11299bp|location=Sequence derived from alignment at sc0000039:81377..92675+ (Clytia hemisphaerica)
ATCAGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcgg ctcaaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAG AGAAACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCA TTCAATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGA GTTTCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCG TTTCAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAG TTACAAAGGTAGATTTCTCCTCTGACTaacatttttaatttaaaaggttt tttacTAACAAACATGTTCAGGTAAAAGATTTATAAGTCCTCTTGATTTT AGACTTTTAGTCAGTTTAGTTTAATATATAATAAAccaaacaagacgact taaagtcgaaaatttcgcataatacttgaacatcaacgacgaagacgcat gaaacgtgactcctgcagcattatgcattttgaatgaagcgctACACGAG GTcatagataccctgttttttatgaaaaatcttaatccattaaaaaaaga ttccttaaaaaatgcgactaaagaattccattctataaagcgtaaacaaa atctttcaattcagagaactgcaatatacacttgagaaaaataattttaa atgtttttgaaaatgaagaagaaaaaatgaacttttcattcttcggtgcc agaaacctcattttgggctttgaaggaacttgtgataaagacttcattca cttgcgcaaagtttatatcaacttctttctataaacagtagaatttatcT AAAACTGAGAAAAATGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNgctagtcagaaaaatctgttgtatactactttctgatatgaatg atggcccaccaccatcaaaatcatttgacttttccagaaaaaaattgaat attggggggggggaagggtataacattttttggaaatttaccctggacat tgtgacttttgatcccccggacagcaggtctaacccacCCCGCCCCAGAC ATCAGttgagtagttgagctccagcttctggactaaAAAATGNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ncaatcagcttaaattcgctttcattgtcctttgactttcaaaaaatagt atttaaaaattatgaatttataataattacaaaaaacaaaaagtttgata cttctagggaaatattcaataaattcctagtttcaattttcagcgGGTGT TTTTCTAGGGGTTCGTTTAttgcgcaatttttgcgtcacacaaactttct cggccgctcgtaataattatgcattgccaaatttagttctccattgtcaa gtcaggcagtgtagacctaactcttcatacaaaaattacgggaaacgcat atttggactttgtaccctatgctgcactcaagcacttgtgccaaaatccc gcaaaggcgggacaaaaatcagttttttgaagtttgcaaaaaaacgccac atagaagatctttcaaattcagtatgtgaatagagcagtaaNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNCCCGCGCCGCGCGCCAcgcgggagctcgg gcgctaTGCGAGAGTTCtcagctcaatcctcggaccgcgctaaaaatggt aaactgagctgtgatagatcatttcgatgcaagttgttggaatgtttaca aggctcttgacagaaaattgtttgttttattgtcaatgatgacagtgtgg ttattaattttgttagatctgacaaattgatgtttgtaagtgcactttat agttttgattcccattgaagaatcatattctggttttcatgttattagat gctgttttagagctttaggtctacactgtcagGATTGATGGTGACGttac ctaagcataaaaaagaaaggatttcgtcactTTTATGCATGTATGAATTT GAGAGATATTCACACTTTTCATAGACTAGTCGGAATGCTTTCTTTTACTC Gctggattgatggtaacttttcatcttcattatttttaaaatgaagcaca aacgaaaaaaacaaaacttcagaaagttgcgtatttccagtgagtaaaca attctgacaattaacaaaattgatgatgatgattttttttcggtcaggca aatgtctcgtattgggggttctagtcttgacccctaagcctatgCGAGAT TGAAgagtttgggtaaacgagacaaaactccaaaaaagctggtgttttga agcgcttccgtgcaatcgaaatatcgctgtttgtgacgcactgatcCACG CAACAAGAAAATCCCAGGAGTCCGGGGAATTAGCAGGGTCGTCTGTAAGC ATGCAATTGCACTGCTGAAATTTACGCCTAGGTGCAATTGCAGGTTTACA AATCCAGCCCAGGTTAAGATTGCTTGAGCAGATAGAAGAgttctcatttt caaaatcgTGCAAATGCAGTGAGGCGggaatttcgatttttgaggattac gattttaccagttttttagcgatttttgccttgctaacccaaatcttgca acatctttaccttaaggaagatcgaaattagagtttttcagcgttctgaa aaaaacgcatagcagaaattttttcatcttcacaggatatattctcaaca acaaaatacatcttttggtctttgggtttgtttctgacgttttttcttca aagaatatcgatcactttccttttccccttgagcgcgtgagaaaaaaatg attagctcacGTTTtggcgcgggcgaataaagatgaggcggcaatcttgc actgagggtgctacttagtttccgccctattttgcgcccacgatagaatg gtctaaacacgggggtattccaaatgataaactatgtcattctgtaagtg tttattttctgagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNtaaaaaaattctatgtttacaaacattccctctcc aagttgaacaataaactattgcaagaactcttgaaacaaaacatccaACA ATGGCTTTAAAATGTCACGATGTTAAtcaatgtgataaaaaaagtgtgag ttgtaaaaattaTCAGCAATTttaaataattaccttttattctgaatccg ttgtTTGTGTTTAAAACCTTAACAAATGTTATTTGATTTAATGGATTCAA tatatcaaatctctcagtttagttgacgcTTTGGTATCTGTGTTGCACCA cacagcaaaaggtttgtttttattttagtttgtatctttgaaagacccca tcagaattaggcagggctgttggaTTTAGGACCCCTCacaatagtatatt gaatattattaacttatttatttaagtatttttgagcgcaaatttaaata tatggttaaataaaaaacaaatgataacagttctgtttatcctaaaaccc ccgggaaaagttatTTTGcagacttagctattttacaaatcttggaattc cgatacataacccgattggttaatttcggaacagcttcaagaaagtcata atgacagataattttaaaggtttcagaggaaatgtgtgtaatttatcgat gttgatggcttgttgatttttaaagaaataagatAACAGGTGtaactttt tctaatcctggattatcgaggttccagctacactgaaatACATGGCCAAA AGGgaaaaattctataaaaaattCTGAGTAAGATAAACCCAAGGctttca aaattcaacaaagtAGTCAGAagcaaataaagttttttcaaatgaaaGAC TAGTTAGGCATGCATTTAGATGCTTACTGCTCATTCAGATTTATAGTGAA AAGTGTGTAATTGCATCCAAAAATTCTTACATTTTCTATAGCCATATAAT TGCGCGTTAAGATCTCATAAGCTAAGGGTACAATAGTTGTTTTAGAGAAC GTGACAGCCTAttaaataacaaattactccacatacattactttccctta gccaataaaaacgtgataaattatcttgtctctaggtaactgttgtggag taattagttattcaataggtCGTCGCATTCTCCAAATTAAGAAAGTTGAA TtggggctattccaaaaaaatcttACAGGGGTATTGAGGAACTTTTTCCT ATGACAAATATTGTAGGCCATTGCACTCAGTCAAGTCAGGCCTGTTCTTC TTAAAATAGAATACAACACAATATGCGTACAGATGTGCAACCATATGCTT CAGATTGCATATTTTCGCCCGCgttcctttagagctttagcataCTGGGC CAGAAAATGCACAATCTGCTCTGAGGTTATCAGATACAAGGCCAAAAGCT TTATGTtatgaattttatattttaatgaaaacaaaaataaagcttCTATG GTTTAAAACTACAAATGGTTGTTGGGacaggggggtcggtagtaaaatct cagacatatatgagtagtaaaaggatttttacgaatttttacataccacc acccagactctttgAAGAGTTATTTTACTATCCTGgtagcaaacaacttt ccaacagaaaattttttcaagttatataaattttcagatttttcagaaaa gtcatccaaaaaattaaaagaattataaaaatagctaaaatttgctaatt ttaccagttttaactacccaggttgtaaaattttttcaacatttaacaca tagataccacccattttagtatttaactaccctgggtagtaaattttttt ttcgattttttggtCACACCatcaccgtagtaaacgtcattatgtctgag attttactaccgacccccccccccccggttggGANNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGCTGGTTGGGATCAAAT TGTAAGACCAAACTTTAGTGATTTTAAGGAGGGGTAGTGTCTAATAGCCA AATgctaaaagggcatgaaaaaggAGACTGATCCCTGATTTTGTCAAACA GATAAtgtttttcttccaaaattggGCTACAAACATTTTGAGAAttactg tgcaaaaaatctgaaaatctgtCGAGAAGAAAATAGAGGAGCCTGTTTTA CGCCGgctttcggctgttccggcaatttttaaggagttgaaaaatgattt ttctggTAATCAAACCAACGATGCAAAACTTTGAGCATCACCATGAAATA GTTTTGTTTGTGAAGAAAGAATCAAGTCAAGTAGATCAAGAGagatttca ctttcgtttttatgTACTCGTCTTTGTATTCGTGTAAATAGTACTTTTCA AAGCACTTAATTtctgtttgaaaatttaaaagattactcacttttttcga aatttaagaTTTGTGATGATGTGATGATGTTACATGTAGATATAGCGCAA TAAGTTTCAAGAAAGGTGTACTCTGAGTAGAAAGGGAAGGGCTCCTGTCC ATCCCACCCCGCATATAATGAACCCCCTGAAAgctgggggctggacccct ctggGACCCATCTGCACACTATGCCCCGTTCAAAACCCCCTCTTTAGTCG GCATCAAAACCCCCAGCCTTAAGATTTAGGAAACTGCATTGGTCTCCATT TTACAGGGTGAGGCTCGAATTAGACGAGGGAAAAGTTGGGAAGGCAGCCT TGAACGAAGTGAATATAATGCAAGAAAACTCCTTGACACATTGAGCTATG ATTATTTCTAAAAgggaaaatatctttcaaaagtGCTAAGGCTTCTATTC ATATCTATTAGAACCCCAGATAACCTCGAATTATTCCCAAAACATGGGAA AAATGTTAGTGGTATTATGGTCGTTTTGGAGGCTACATTTTTCATACAGT CATTATTTTGAGgcgaatcaaaagttattgcacGTACCCTACAGTTTAGA GAAACAATATTGTTTAGTTAATTAAAAGCGGATTTGATATTATGATAGAG AGAAGTCTAAGCGAAAATCTCATTACATTCTATTACATATAACATATAAT AGCATAACCTAACATTCTTTACACTTTGCATTTCACTAAAACACTACTTA CACAATTTCGCATACACGAAATATACTTACCATAAAGGAGAAATTTACAC TTGCTTTTTATGAAGCTTCTAAATCAAGCACATATTTTACTCATCAAACA CCTCATACATGCAACGCAGTTTGTTCAGTGTTTCTTGTGTATCGCCAGAG AATGCATTTTACAAGATGTCTTGAATTTTCTCAACTGGAAAAGATAGCGA TATTTCCATAACCTGAGCAAAACTTTGAACATTgatatcttatttttttt gagattttcttgacccccttttttctttagtttttcaaatatttttttcc tttcattGTGGTAGATATATAGTTTCGTTGAATTATTCGACCATCTTGTC CTGGTGATTCATAACCACGTGTCCTCTCTCTTTCTCCTCTTCCATCAACA CAAATTTCGTTATCTCAATATTTGCGCTATAACAAGAGAGACTTCTGTTT GATCGATTTTTATCGCAAcgtaaagagaaaaaagaagcTCTTTGTTCATG TCTATAATATTTCTATAGATGTGTTaagctaattttcttcaaaataatat AGTGTTTTTTACATTAAAAGATTCTACGCGTAATATTATAAGGTTCGTGT TGTGTGGCAGAGAATTTCATGTAGAAGAGGGGAAAACATTAGAATTTTCA CTGAACTAACTTGTCTGTCTTGATTTCTTCAGCGACTCCGAACACACTTC AATCACCTTTCGGAAACCCTCAACCACAATCGTCTTACAGCTCATCATCA CACAATATGGCACCATCTGGCTATGGGAATCAGCAACAATCACAATCAGG AGGGTACAATGCTCCTCAACCTCAAGGAACTCAACTGGTAAAGGGTGCTG ATGCTGGCGTCAAATTAGAAGCTCTAAAGAAATGGACCATGTCAACGTAC AAATACACCAAACAAATGGTGTCCGAAAAAATGGGCCGTCGAACACGGAC CGTGGATACCGAATTGGAAAAACACATCCAAGGCTTAAAAGAAATGCAAC TGCGCTACACCAATTTGTTAAAACTTTCTAAACaatttcaaagtcaattt caaaatattttggtcacaCAGAAGCTGATGGGTGAAGCATTCAACGAGCT AGCTGTCAAGTCTCCTGATTTGCAGGaagaattttcacaaaatgcTGAAT TACAGAAAGTCGTTTCTAAAAATGGTGACGCCTTGATTTCAGCTCTTACA TTTTTCAACGAGAATCTTTGGACTTTATCGACTAAAACGATCGAGGACAC GATTCAAACGATTCGAGATTACGAGAATTGTCGTATCGAGTATGATGCCT ACCGGACGGATTTGGAAGCACATGAGGCGGTCGGACAATCAATGAAAACG GAACAAGCTAGAAAAGaattcaacgagcacaaagAGAAATTCGAATCTTT ACGAAACAATCttcaaattaaaatgaaatttcttgaaGAGAATAAGGTAG GTTTTGGACGTTGATTCTCTCTTATATACACTAATCACCCCTCTCTTCTT TATCCAGtcgttttatgtttttattttgcacTTTCTTAATACGTGTCTGG ATGCTCTTAGCTTATATTTCTATCCTAACAGTGCGATTTATAATTACTtg ttttttgatcattttttacTGATAAGTTTTTTCACAGAttcgaaaagatt tttttacgtttttcttgGCTTTGCTGTTATAAACTTTGATTCCTTGAAAT AACTTTAGGTGAAGGTAATGCGAAAACAATTATTGATTCTGCACAACGCC CTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTGGAAAAAACGATGAA AGAATTTCACATTCGTGTCATGAACAAAGGCGAAGAAGCTTCCTTCCTTG AAACGCACTAAATTGAACTTGTTCCATTCAAAAAATCTTCTAGTTACGAT ATGATATTTTTGGATNCTGAACTTGTTGCATTCAAAAAATCTTCTAGCTA CGATAtgatatttttggattttgaaaccGGCATTAACTTTTTATTATGTA AAGAATTTTCACAAATTGCTGGTATTGAGGCAGGCTCTTTGcaggaaaaa aaaccgagtcAATTACAATTGGCACCTCTTACAATGGCCATTTTGATAAC GGCTCTTACGGTATTGCGCCGCTGGTGAAAACCATATCATTGAATCACAT ATTTGTGATGATGAACTTTCAGGTTAACTAACCTAACCACTCACTGCACT CTGCCTACACCTGTATAATCAATCAAACTATCATTATCCTATTTATGTTT GGAATTAGataattttctcaatttttttttaattattttcttgGATACGT ATTGGAAATTTATGAGTGATTTTGTGTGACGTTTATGTTTTCCCCTTTtg aaattaaatcaaatttGCTCAAAGAATAAGTCAAGAATTGTAAATCAACT TTACGACTCGATTGTCCGCTGCTTTAGATCACCTTCCAAGTTTATTAGAA CACAAATAAAAGACTCAGCTCAATAATATTTGTTATTCTGTTTCAGGCta gtttatgtttctttttggtatttaatttatttcagattttgattgtttgt ttctttcctccaccaaaatattttttgtgtctTTGGATGTAAATATTcca atttttttagaacaaataataattattataaagaaaacacATTTGTAAGC TTTCAAAATACTATTCTTGCCATCAGCTGAATTTTAGAAAGAATGGCGTT CTTTTTACCATTATTCTACACAATTCCGAGGGCCAAAGTCCGATGACGGA AAAAGGCTCGAAAAAAGGTCTTATCCATgattactaaaaataaaaatgag tttCAGTGGCACCGAGNAggctcgaaaaaagatcttatccattattacta aaaataaaaatgttcggtAACCTGAGTTTCAGTGGCACTGAGAACAAAG

Coding sequence (CDS) from alignment at sc0000039:81377..92675+

>TCONS_00004007 ID=TCONS_00004007|Name=TCONS_00004007|organism=Clytia hemisphaerica|type=CDS|length=3672bp|location=Sequence derived from alignment at sc0000039:81377..92675+ (Clytia hemisphaerica)
TCAGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcggc
tcaaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAGA
GAAACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCAT
TCAATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGAG
TTTCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCGT
TTCAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAGT
TACAAAGCGACTCCGAACACACTTCAATCACCTTTCGGAAACCCTCAACC
ACAATCGTCTTACAGCTCATCATCACACAATATGGCACCATCTGGCTATG
GGAATCAGCAACAATCACAATCAGGAGGGTACAATGCTCCTCAACCTCAA
GGAACTCAACTGGTAAAGGGTGCTGATGCTGGCGTCAAATTAGAAGCTCT
AAAGAAATGGACCATGTCAACGTACAAATACACCAAACAAATGGTGTCCG
AAAAAATGGGCCGTCGAACACGGACCGTGGATACCGAATTGGAAAAACAC
ATCCAAGGCTTAAAAGAAATGCAACTGCGCTACACCAATTTGTTAAAACT
TTCTAAACaatttcaaagtcaatttcaaaatattttggtcacaCAGAAGC
TGATGGGTGAAGCATTCAACGAGCTAGCTGTCAAGTCTCCTGATTTGCAG
GaagaattttcacaaaatgcTGAATTACAGAAAGTCGTTTCTAAAAATGG
TGACGCCTTGATTTCAGCTCTTACATTTTTCAACGAGAATCTTTGGACTT
TATCGACTAAAACGATCGAGGACACGATTCAAACGATTCGAGATTACGAG
AATTGTCGTATCGAGTATGATGCCTACCGGACGGATTTGGAAGCACATGA
GGCGGTCGGACAATCAATGAAAACGGAACAAGCTAGAAAAGaattcaacg
agcacaaagAGAAATTCGAATCTTTACGAAACAATCttcaaattaaaatg
aaatttcttgaaGAGAATAAGGTGAAGGTAATGCGAAAACAATTATTGAT
TCTGCACAACGCCCTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTGG
AAAAAACGATGAAAGAATTTCACATTCGTGTCATGAACAAAGGCGAAGAA
GCTTCCTTCCTTGAAACGCACTAATCAGAAATTGCAAAGCGCGGATGTGT
TGTGTTAtatttcaagatggcggctcaaggcGAGGGAAATATCGGTGGGT
ATATTCCTCCAACTTTTCCCCAGAGAAACGGTTATGAGCGAGAGACCCCG
ATCCTAGACTCAGGTCCAGATCATTCAATGGAAGACATGATAAAAGAGGC
AACTGATATGCAATCAGGATCGAGTTTCAACCGATCCAGGCTTCGAATGC
AAACTGATGAAGGTGTATCACCGTTTCAACAACCTGCAGCGCAACCAAAC
TCTTCTTACTCCTCTTCTAGTAGTTACAAAGCGACTCCGAACACACTTCA
ATCACCTTTCGGAAACCCTCAACCACAATCGTCTTACAGCTCATCATCAC
ACAATATGGCACCATCTGGCTATGGGAATCAGCAACAATCACAATCAGGA
GGGTACAATGCTCCTCAACCTCAAGGAACTCAACTGGTAAAGGGTGCTGA
TGCTGGCGTCAAATTAGAAGCTCTAAAGAAATGGACCATGTCAACGTACA
AATACACCAAACAAATGGTGTCCGAAAAAATGGGCCGTCGAACACGGACC
GTGGATACCGAATTGGAAAAACACATCCAAGGCTTAAAAGAAATGCAACT
GCGCTACACCAATTTGTTAAAACTTTCTAAACaatttcaaagtcaatttc
aaaatattttggtcacaCAGAAGCTGATGGGTGAAGCATTCAACGAGCTA
GCTGTCAAGTCTCCTGATTTGCAGGaagaattttcacaaaatgcTGAATT
ACAGAAAGTCGTTTCTAAAAATGGTGACGCCTTGATTTCAGCTCTTACAT
TTTTCAACGAGAATCTTTGGACTTTATCGACTAAAACGATCGAGGACACG
ATTCAAACGATTCGAGATTACGAGAATTGTCGTATCGAGTATGATGCCTA
CCGGACGGATTTGGAAGCACATGAGGCGGTCGGACAATCAATGAAAACGG
AACAAGCTAGAAAAGaattcaacgagcacaaagAGAAATTCGAATCTTTA
CGAAACAATCttcaaattaaaatgaaatttcttgaaGAGAATAAGGTGAA
GGTAATGCGAAAACAATTATTGATTCTGCACAACGCCCTGGCTGCCTACT
TTTCTGGTAACAAGGACGAACTGGAAAAAACGATGAAAGAATTTCACATT
CGTGTCATGAACAAAGGCGAAGAAGCTTCCTTCCTTGAAACGCACTAATC
AGAAATTGCAAAGCGCGGATGTGTTGTGTTAtatttcaagatggcggctc
aaggcGAGGGAAATATCGGTGGGTATATTCCTCCAACTTTTCCCCAGAGA
AACGGTTATGAGCGAGAGACCCCGATCCTAGACTCAGGTCCAGATCATTC
AATGGAAGACATGATAAAAGAGGCAACTGATATGCAATCAGGATCGAGTT
TCAACCGATCCAGGCTTCGAATGCAAACTGATGAAGGTGTATCACCGTTT
CAACAACCTGCAGCGCAACCAAACTCTTCTTACTCCTCTTCTAGTAGTTA
CAAAGCGACTCCGAACACACTTCAATCACCTTTCGGAAACCCTCAACCAC
AATCGTCTTACAGCTCATCATCACACAATATGGCACCATCTGGCTATGGG
AATCAGCAACAATCACAATCAGGAGGGTACAATGCTCCTCAACCTCAAGG
AACTCAACTGGTAAAGGGTGCTGATGCTGGCGTCAAATTAGAAGCTCTAA
AGAAATGGACCATGTCAACGTACAAATACACCAAACAAATGGTGTCCGAA
AAAATGGGCCGTCGAACACGGACCGTGGATACCGAATTGGAAAAACACAT
CCAAGGCTTAAAAGAAATGCAACTGCGCTACACCAATTTGTTAAAACTTT
CTAAACaatttcaaagtcaatttcaaaatattttggtcacaCAGAAGCTG
ATGGGTGAAGCATTCAACGAGCTAGCTGTCAAGTCTCCTGATTTGCAGGa
agaattttcacaaaatgcTGAATTACAGAAAGTCGTTTCTAAAAATGGTG
ACGCCTTGATTTCAGCTCTTACATTTTTCAACGAGAATCTTTGGACTTTA
TCGACTAAAACGATCGAGGACACGATTCAAACGATTCGAGATTACGAGAA
TTGTCGTATCGAGTATGATGCCTACCGGACGGATTTGGAAGCACATGAGG
CGGTCGGACAATCAATGAAAACGGAACAAGCTAGAAAAGaattcaacgag
cacaaagAGAAATTCGAATCTTTACGAAACAATCttcaaattaaaatgaa
atttcttgaaGAGAATAAGGTGAAGGTAATGCGAAAACAATTATTGATTC
TGCACAACGCCCTGGCTGCCTACTTTTCTGGTAACAAGGACGAACTGGAA
AAAACGATGAAAGAATTTCACATTCGTGTCATGAACAAAGGCGAAGAAGC
TTCCTTCCTTGAAACGCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002253XLOC_002253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004007-proteinTCONS_00004007-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004007-exon-sc0000039-1491911889:81377..81684TCONS_00004007-exon-sc0000039-1491911889:81377..81684Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1510915933:81377..81684TCONS_00004007-exon-sc0000039-1510915933:81377..81684Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1575043694:81377..81684TCONS_00004007-exon-sc0000039-1575043694:81377..81684Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1491911889:90459..91222TCONS_00004007-exon-sc0000039-1491911889:90459..91222Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1510915933:90459..91222TCONS_00004007-exon-sc0000039-1510915933:90459..91222Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1575043694:90459..91222TCONS_00004007-exon-sc0000039-1575043694:90459..91222Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1491911889:91485..92571TCONS_00004007-exon-sc0000039-1491911889:91485..92571Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1510915933:91485..92571TCONS_00004007-exon-sc0000039-1510915933:91485..92571Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1575043694:91485..92571TCONS_00004007-exon-sc0000039-1575043694:91485..92571Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1491911889:92648..92675TCONS_00004007-exon-sc0000039-1491911889:92648..92675Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1510915933:92648..92675TCONS_00004007-exon-sc0000039-1510915933:92648..92675Clytia hemisphaericaexon
TCONS_00004007-exon-sc0000039-1575043694:92648..92675TCONS_00004007-exon-sc0000039-1575043694:92648..92675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:81377..92675 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.76 121.496 145.175 159.425 84.6813 68.7757 95.6574 117.731 69.8275 82.6464 64.9848 61.1222 45.9134 43.1238 30.435 36.2834 52.2949 54.5213 26.854 34.1473 38.7459 37.716 70.5921 70.501 67.4331 61.8479 81.6369 85.0495 33.1763 37.4891
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010504AH_dom
IPR027267AH/BAR-dom
Vocabulary: Molecular Function
TermDefinition
GO:0019904protein domain specific binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0019904 protein domain specific binding
Blast
BLAST of TCONS_00004007 vs. Swiss-Prot (Human)
Match: ARFP1 (Arfaptin-1 OS=Homo sapiens GN=ARFIP1 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.299e-74
Identity = 120/248 (48.39%), Postives = 183/248 (73.79%), Query Frame = 2
Query:  488 KLEALKKWTMSTYKYTKQMVSEKMGRRTRTVDTELEKHIQGLKEMQLRYTNLLKLSKQFQSQFQNILVTQKLMGEAFNELAVKSPDLQEEFSQNAELQKVVSKNGDALISALTFFNENLWTLSTKTIEDTIQTIRDYENCRIEYDAYRTDLE----AHEAVGQSMKTEQARKEFNEHKEKFESLRNNLQIKMKFLEENKVKVMRKQLLILHNALAAYFSGNKDELEKTMKEFHIRVMNKGEEA-SFLE 1216
            KLE ++KW+++TYK T+Q++SEK+GR +RTVD ELE  I  L++ + +Y N+LKL++   +Q   ++ TQ+ +G+AF +L++KS +L EEF  NA+ QK+++KNG+ L+ A+ FF  ++ TL  KTIEDT+ T++ YE+ RIEYDAYRTDLE             K EQ++  F  HKEK++ +RN++ +K+KFLEENKVKV+  QL++ HNA+AAYF+GN+ +LE+T+K+FHI++   G +A S+LE
Sbjct:  124 KLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLE 371          
The following BLAST results are available for this feature:
BLAST of TCONS_00004007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARFP11.299e-7448.39Arfaptin-1 OS=Homo sapiens GN=ARFIP1 PE=1 SV=2[more]
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