TCONS_00002889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002889
Unique NameTCONS_00002889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002889 ID=TCONS_00002889|Name=TCONS_00002889|organism=Clytia hemisphaerica|type=transcript|length=1796bp
TCTGTACTACTCAGAAATCTTTAAGACTgctgccaaatttaatttttctg
tcTTATTTTTTAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGAT
GCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATG
GCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAG
ATTTAGGCGCTGCCTATGAGGTACTCTCAGACGcagacaaaagaaaaaca
tatgaTAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGG
TGATGGATTTGACCCCTTTGAATCATTTTTTGGTGGATTCGGAGGATTCG
GTTTTGGCGGTGGAAATAAACAAAGAGGCCATGGTGAAATTCCCAAAGGT
GGAAATATTGTTATGGATCTTGAAGTCACATTAGAAGAATTATATACTGG
AGATTTTGTCGAGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCG
GTACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGA
CCTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAA
TAAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAG
GAATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGGAGAACCACAT
ATTGATGGAGAGCCAGgagatttgatttttaaaattaaagaaCTAAAGCA
TAAAACGTTCGAAAGAAGGGGAGATGATTTGTTCACTAACATCACTATCA
GTTTAGTTGACGCCTTGAACGGTTTCGATATGGAATTCAAACATCTAGAT
GGTCACGTGGTCAAAGTTCACCGCGAAAAGATCACATGGCCTGGTGCCAA
AATCAAGAAGAAGGGAGAAGGGATGCCCAATTATCATAATAATTTGGACA
AGGGTGTCTTAGTGATCACTTTCGATGTTGATTTCCCAAAAGGAGAATTG
GCAGAGGAACAAAAAGAAGcaATAAAAACGATATTGAATCAAGATTCGAA
ACAAAAGATATACAATGGATTACAAGTATGATAGATAGGAAGCAATTGAC
ATTTATTATTTCATAGGTAGGATTTAAAAAGGGCTTTATATTTTATCGTC
AGAAACTTTGAGGCAAAGCCAAAATGGCACTTTGATGTAAACTTATCCtt
ggcggaatttatttttGCGATGATTAGACATTTCTATTGGATCGCCATCG
AGTCTCGATTTTCAGCGAATTTTGTCTTAAAAATACACAAAACGTATTTT
CCGTTTGATAACAGTTTCCACGCCTATAGCATAAGTGTGTGTGTTCTCAG
ACCTGGAGTGGCCCAAAATTAAAATCCCATTTCTAGCTCAAATGGCTATG
ATATGTTGggaaaaatttctattttatgtttttcgtcaaattttttcatg
aatgtatttttttgttcgttcgatttttagatttatattgatgtatacat
atttaactttttttcgaatttctaGGCCTTTTACAAAGTTCAAACGTTTT
ATAgaaattaattttggaaaattcagaATTTCATTGCGTTGTTACAAACT
TCGAAAAACAGCTTTTAAaccttaattttcatttttgatacaggtgagaa
atgtttttgagaaaattaagaTTCTTTATAATGTTTATTCCAgttttatt
tgttgtttttcttgtaAACTTTATTGAATAAGagcaaagttttttgaaaa
tgaatttatttaagaaaggttACGATACAAGAAAATGCTTGTTGCG
Run BLAST on NCBI

transcript from alignment at sc0000023:736979..742525-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002889 ID=TCONS_00002889|Name=TCONS_00002889|organism=Clytia hemisphaerica|type=transcript|length=5547bp|location=Sequence derived from alignment at sc0000023:736979..742525- (Clytia hemisphaerica)
TCTGTACTACTCAGAAATCTTTAAGACTGCTGCCAAATTTAATTTTTCTG TCTTATTTTTTAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGAT GCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATG GCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAG ATTTAGGCGCTGCCTATGAGGTAAATTTTAATGAACACATCATGAGACAA GTGTTGATAATGTGTTCACCAAGTCTATTATTTTAAGATGTTAGGTTTTA AAGCTTTAAAACTTGTAAAGTTGACTGAAAGTTTGAAAATATTTTTCTAC AATGAATGCAAATAATATTCTCTGACAGTCCAGGATAACTTTCAATGATT GCATTAATGTCTGATATCACTCCTAATAAGATACTTTATTATAAACACTC ATGATCACTGGAGAAAATATAATAAAAGTGTCCAGTTAAAGCTTGTCCAC TATAATCTGGGTACATACATATTTTAGGGATTTTTTGCTACCAGAAAACA GAATAATTTCTTCAAGAAAAAGAATTAGCCGTGGAAAAAGGTTTAAAAAG TAAAGAAAGTCTATTAAGTATTCAATATTCTAGCACTAGTCTAAAGCAAA ACTTAAACCCTCACTTCCACCACGACTCTGCCCTGGACCAGCTTTTACTC ATCATTACCTAGATGATCATAGAAGCAAGAACTAGACTTACGATTGACCT GAGTTTTACTTTATAATTCTAAAATCACTTATCTTAGGTACTCTCAGACG CAGACAAAAGAAAAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAA ATGGGCGGCGGAGGTGGTGATGGATTTGACCCCTTTGAATCGTATGTCTT ATTTCTTTTTCAGATGTTTTTTGTTTTGTTTTTGACATTACTTTAATTAG TACTTTCAAGGGATAATCACTATTTAAGATTTTTTTGGCCTGGAGACACT TTCTGTTCTTTGTCACTGCATTTTGTCAGTTTTTAGATTACTTCAAAATA ATGTTCTTTAAAGGGATGATCAGAATTTAAGATTTGGAGCAATACTGGCA ATATCTTTATTTTCATTTTATTTTTACCTTTTCAAAAATAAATAGACATC TGATTTTCAAAAGGTACCTGTCAGCCAAAATTTTCAAGCTATATTGTTTC GGTGAGAGGTAGTTTATGCACTTGGTATGTTTATGATCTAAGGTATAAAG TTGAAAGTTATTTAAAACATTTCCTCCCTTGATTGGCTATAATTTTTCTT TAAATCAGATTTTTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTGGAAA TAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAATATTGTTATGG ATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTTTGTCGAGGTA AATTATCTACAGTTCTATTAATCCAATTAGCTTTAAAAAGTTTTTTCAAC AGCCAGACTTTTCCACTAATTTAATGCTGAATTTTAGTCGTAACTGGTCG TAATAATATTTTAAGACTATTGATATTCTAGGAAGAACCAGAATTGACAC ATTTGTGATTGTTTCGTCTTAAAAAACTAGTTCCATTCAAATCTCAAAGC TCTTTGCTTTTCTTTTATATAGTAGTGACCAACTACAACCTTTCACTTTT CTCCTTTTTCGCAGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGC GGTACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGG ACCTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCA ATAAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAA GGAATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGGTGAGTTGTA CCAACATTTTTTGGACCTACCCCGATGGTGGGGTGGAGGTCCTATAAATT AATCTTTATCCGTTTGTTCGTTCGTTCGCTCGCTCGCTCGCTCGTTATTA GCTAACCTCATGATTGGCTCATTAGTTTTTTCTGATTTTTTTTCTCAAAA AACGCATGTTTATCCATAAGAATCACTATTAGTAATTTTGCTCACAAAGT CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNCACTTGTTGTATTCTAACTTCAACTTTTTCTGGGGACCT TTGTACGTAGAGGGGGTAAGCAATATTGAAACACTGGGAGGATGGAAATG TAGGGGGTCTAATAAAATGGTGGCTTCGACACAGAGCAAGTTTCCTTCGA AACAGATTTTCTTTGAAAGAGGGGCGGGTAAAGTTTCATTACAGATAGAG CTTTCATACCCCTCTGCAATCTATGCCACAGTCAACTTTGATTATCGATG GTTTCTAATGGCAATGTGAGTCAGGCTATCAATATATTAGAAAAAGGTTG CTTAACTCACATTGAGTTATAGTTGGGTTCTATGAATTTGAGCGCTGTGA ATCTATGCTATGTTTTTTTCTATTATTCCAGGAGAACCACATATTGATGG AGAGCCAGGAGATTTGATTTTTAAAATTAAAGAACTAAAGTAAGTAAAGA TTCATGAAAAACCAAACATTTTTACCAAAAATTTTGTGCCTAATAAAGAG GGATTTGGTTTTAACGGCTGAAACTCCTCATTTCAGAGGGTCCCAAGTGA GTGTTTTGATAGCTAAAAATATTTGAAAAAGTTCATAAAAGTTAGTTTAG TACTTTAACTCTCATAAGTTTGTTCAATTCATAGACATAAAACATTCGAA GGAAGGAAGGTTCGAAATCAGTTTAGTACTAAACTCTCATAAATTTGCTC AATTTCTAGACATAAAACGTTCGAAATCAGTTTAGTACTAAACTCTCATA AATTTGTTCAATTTCTAGACATAAAACGTTCGAAATCAGTTTAGTACTAA AATCTCATAAATTTGTTCAATTTCTAGGCATAAAACGTTCGAAAGAAGGG GAGATGATTTGTTCACTAACATCACTATCAGTTTAGTTGACGCCTTGAAC GGTTTCGATATGGAATTCAAACATCTAGATGGTCACGTGGTCAAAGTTCA CCGCGAAAAGATCACATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAG GGATGCCCAATTATCATAATAATTTGGACAAGGGTGTCTTAGTGATCACT TTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGG TGAGAAATCTGGTATAATCTCTGATAATTATGATTCTAGGGTTTTAATCA ATAAGGTATATAAAGATCTCCTATGAATCCCCTATGTAAAGCGCTTGATT GGAAGTAACACTTGCAGCTAGAATTCGAAAAATGTGAAACACAAAACAAA GAAAGTGCTAGATTCAATCCGTTATCCAAAATGCGGCGCAAATTTTTTCT TTGCCTAGAAAAGGCTGAAGATACCTGGTAGGTGTGAAGTTGTTTGAAGA GGCGTTGTAATCCTTTTGGCAACCTTTGCCCTAAAAAAGGAAAGGCTGAA GATATTTCTCTAGCCTTCAACTTGACAACTTGAAGCTCGGTTTCTGATTA ATTTCAGAAATAATTATCGCTCTTTTGATAGTTTCCCTTCGTTGGTTTTC TTCCTCAAAATTCTATAATAAAGGTTGTGGTTGTAAGTTTTAAAGCTCTA GAAAATTGAGCTTTTTCTGTATCTGGCTGATTTCGATTTGATTTGATTTC TTTTTTTTTTTTAATTTCAGCAATAAAAACGATATTGAATCAAGATTCGA AACAAAAGATATACAATGGATTACAAGTATGATAGATAGGAAGCAATTGA CATTTATTATTTCATAGGTAGGATTTAAAAAGGGCTTTATATTTTATCGT CAGAAACTTTGAGGCAAAGCCAAAATGGCACTTTGATGTAAACTTATCCT TGGCGGAATTTATTTTTGCGATGATTAGACATTTCTATTGGATCGCCATC GAGTCTCGATTTTCAGCGAATTTTGTCTTAAAAATACACAAAACGTATTT TCCGTTTGATAACAGTTTCCACGCCTATAGCATAAGTGTGTGTGTTCTCA GACCTGGAGTGGCCCAAAATTAAAATCCCATTTCTAGCTCAAATGGCTAT GATATGTTGGGAAAAATTTCTATTTTATGTTTTTCGTCAAATTTTTTCAT GAATGTATTTTTTTGTTCGTTCGATTTTTAGATTTATATTGATGTATACA TATTTAACTTTTTTTCGAATTTCTAGGCCTTTTACAAAGTTCAAACGTTT TATAGAAATTAATTTTGGAAAATTCAGAATTTCATTGCGTTGTTACAAAC TTCGAAAAACAGCTTTTAAACCTTAATTTTCATTTTTGATACAGGTGAGA AATGTTTTTGAGAAAATTAAGATTCTTTATAATGTTTATTCCAGTTTTAT TTGTTGTTTTTCTTGTAAACTTTATTGAATAAGAGCAAAGTTTTTTGAAA ATGAATTTATTTAAGAAAGGTTACGATACAAGAAAATGCTTGTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001568XLOC_001568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002889-exon-sc0000023-1575043694:742306..742525TCONS_00002889-exon-sc0000023-1575043694:742306..742525Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1575043694:741635..741738TCONS_00002889-exon-sc0000023-1575043694:741635..741738Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1575043694:741079..741217TCONS_00002889-exon-sc0000023-1575043694:741079..741217Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1575043694:740586..740811TCONS_00002889-exon-sc0000023-1575043694:740586..740811Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1575043694:738937..738994TCONS_00002889-exon-sc0000023-1575043694:738937..738994Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1575043694:738277..738548TCONS_00002889-exon-sc0000023-1575043694:738277..738548Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1575043694:736979..737755TCONS_00002889-exon-sc0000023-1575043694:736979..737755Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:742306..742525TCONS_00002889-exon-sc0000023-1510915933:742306..742525Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:741635..741738TCONS_00002889-exon-sc0000023-1510915933:741635..741738Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:741079..741217TCONS_00002889-exon-sc0000023-1510915933:741079..741217Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:740586..740811TCONS_00002889-exon-sc0000023-1510915933:740586..740811Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:738937..738994TCONS_00002889-exon-sc0000023-1510915933:738937..738994Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:738277..738548TCONS_00002889-exon-sc0000023-1510915933:738277..738548Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1510915933:736979..737755TCONS_00002889-exon-sc0000023-1510915933:736979..737755Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:742306..742525TCONS_00002889-exon-sc0000023-1491911889:742306..742525Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:741635..741738TCONS_00002889-exon-sc0000023-1491911889:741635..741738Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:741079..741217TCONS_00002889-exon-sc0000023-1491911889:741079..741217Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:740586..740811TCONS_00002889-exon-sc0000023-1491911889:740586..740811Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:738937..738994TCONS_00002889-exon-sc0000023-1491911889:738937..738994Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:738277..738548TCONS_00002889-exon-sc0000023-1491911889:738277..738548Clytia hemisphaericaexon
TCONS_00002889-exon-sc0000023-1491911889:736979..737755TCONS_00002889-exon-sc0000023-1491911889:736979..737755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:736979..742525 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.4595 24.9321 4.80905 0.955618 48.1346 28.6136 64.7445 65.6751 28.9672 31.3812 24.1312 18.235 18.8318 18.9044 13.1037 15.4422 19.247 17.5901 5.38766 9.17135 27.0473 22.8809 30.9382 29.2559 26.9762 43.0881 31.2879 22.3026 34.9481 26.4186
Blast
BLAST of TCONS_00002889 vs. Swiss-Prot (Human)
Match: DJB11 (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 2.169e-142
Identity = 205/346 (59.25%), Postives = 257/346 (74.28%), Query Frame = 2
Query:   38 FNFSVLFFSRDFYKILGVRKDATDRDIKKAYRKLAMKWHPDKNPDDPKAQDKFQDLGAAYEVLSDADKRKTYDKHGEEGVQKMXXXXXXXXXXXXXXXXXXXXXXXXXXNKQRGHGEIPKGGNIVMDLEVTLEELYTGDFVEVLRAKPFAETTSGTRRCNCRMEMRTHQLGPGRFQMMQEEVCDECPNKRFIIKDQLLEIEIEQGMQDGQEYPFVSEGEPHIDGEPGDLIFKIKELKHKTFERRGDDLFTNITISLVDALNGFDMEFKHLDGHVVKVHREKITWPGAKIKKKGEGMPNYHNNLDKGVLVITFDVDFPKGELAEEQKEAIKTILNQDSKQKIYNGLQ 1075
            +    +   RDFYKILGV + A+ +DIKKAYRKLA++ HPD+NPDDP+AQ+KFQDLGAAYEVLSD++KRK YD +GEEG++                  GF   G      +     IP+G +I++DLEVTLEE+Y G+FVEV+R KP A    G R+CNCR EMRT QLGPGRFQM QE VCDECPN + + +++ LE+EIE G++DG EYPF+ EGEPH+DGEPGDL F+IK +KH  FERRGDDL+TN+TISLV++L GF+M+  HLDGH V + R+KIT PGAK+ KKGEG+PN+ NN  KG L+ITFDVDFPK +L EE +E IK +L Q S QK+YNGLQ
Sbjct:   15 YLIGAVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDR----NIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRDKITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLLKQGSVQKVYNGLQ 356          
The following BLAST results are available for this feature:
BLAST of TCONS_00002889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DJB112.169e-14259.25DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
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