|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002889 ID=TCONS_00002889|Name=TCONS_00002889|organism=Clytia hemisphaerica|type=transcript|length=1796bp TCTGTACTACTCAGAAATCTTTAAGACTgctgccaaatttaatttttctg tcTTATTTTTTAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGAT GCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATG GCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAG ATTTAGGCGCTGCCTATGAGGTACTCTCAGACGcagacaaaagaaaaaca tatgaTAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGG TGATGGATTTGACCCCTTTGAATCATTTTTTGGTGGATTCGGAGGATTCG GTTTTGGCGGTGGAAATAAACAAAGAGGCCATGGTGAAATTCCCAAAGGT GGAAATATTGTTATGGATCTTGAAGTCACATTAGAAGAATTATATACTGG AGATTTTGTCGAGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCG GTACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGA CCTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAA TAAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAG GAATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGGAGAACCACAT ATTGATGGAGAGCCAGgagatttgatttttaaaattaaagaaCTAAAGCA TAAAACGTTCGAAAGAAGGGGAGATGATTTGTTCACTAACATCACTATCA GTTTAGTTGACGCCTTGAACGGTTTCGATATGGAATTCAAACATCTAGAT GGTCACGTGGTCAAAGTTCACCGCGAAAAGATCACATGGCCTGGTGCCAA AATCAAGAAGAAGGGAGAAGGGATGCCCAATTATCATAATAATTTGGACA AGGGTGTCTTAGTGATCACTTTCGATGTTGATTTCCCAAAAGGAGAATTG GCAGAGGAACAAAAAGAAGcaATAAAAACGATATTGAATCAAGATTCGAA ACAAAAGATATACAATGGATTACAAGTATGATAGATAGGAAGCAATTGAC ATTTATTATTTCATAGGTAGGATTTAAAAAGGGCTTTATATTTTATCGTC AGAAACTTTGAGGCAAAGCCAAAATGGCACTTTGATGTAAACTTATCCtt ggcggaatttatttttGCGATGATTAGACATTTCTATTGGATCGCCATCG AGTCTCGATTTTCAGCGAATTTTGTCTTAAAAATACACAAAACGTATTTT CCGTTTGATAACAGTTTCCACGCCTATAGCATAAGTGTGTGTGTTCTCAG ACCTGGAGTGGCCCAAAATTAAAATCCCATTTCTAGCTCAAATGGCTATG ATATGTTGggaaaaatttctattttatgtttttcgtcaaattttttcatg aatgtatttttttgttcgttcgatttttagatttatattgatgtatacat atttaactttttttcgaatttctaGGCCTTTTACAAAGTTCAAACGTTTT ATAgaaattaattttggaaaattcagaATTTCATTGCGTTGTTACAAACT TCGAAAAACAGCTTTTAAaccttaattttcatttttgatacaggtgagaa atgtttttgagaaaattaagaTTCTTTATAATGTTTATTCCAgttttatt tgttgtttttcttgtaAACTTTATTGAATAAGagcaaagttttttgaaaa tgaatttatttaagaaaggttACGATACAAGAAAATGCTTGTTGCG Run BLAST on NCBI transcript from alignment at sc0000023:736979..742525- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002889 ID=TCONS_00002889|Name=TCONS_00002889|organism=Clytia hemisphaerica|type=transcript|length=5547bp|location=Sequence derived from alignment at sc0000023:736979..742525- (Clytia hemisphaerica) TCTGTACTACTCAGAAATCTTTAAGACTGCTGCCAAATTTAATTTTTCTG
TCTTATTTTTTAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGAT
GCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATG
GCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAG
ATTTAGGCGCTGCCTATGAGGTAAATTTTAATGAACACATCATGAGACAA
GTGTTGATAATGTGTTCACCAAGTCTATTATTTTAAGATGTTAGGTTTTA
AAGCTTTAAAACTTGTAAAGTTGACTGAAAGTTTGAAAATATTTTTCTAC
AATGAATGCAAATAATATTCTCTGACAGTCCAGGATAACTTTCAATGATT
GCATTAATGTCTGATATCACTCCTAATAAGATACTTTATTATAAACACTC
ATGATCACTGGAGAAAATATAATAAAAGTGTCCAGTTAAAGCTTGTCCAC
TATAATCTGGGTACATACATATTTTAGGGATTTTTTGCTACCAGAAAACA
GAATAATTTCTTCAAGAAAAAGAATTAGCCGTGGAAAAAGGTTTAAAAAG
TAAAGAAAGTCTATTAAGTATTCAATATTCTAGCACTAGTCTAAAGCAAA
ACTTAAACCCTCACTTCCACCACGACTCTGCCCTGGACCAGCTTTTACTC
ATCATTACCTAGATGATCATAGAAGCAAGAACTAGACTTACGATTGACCT
GAGTTTTACTTTATAATTCTAAAATCACTTATCTTAGGTACTCTCAGACG
CAGACAAAAGAAAAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAA
ATGGGCGGCGGAGGTGGTGATGGATTTGACCCCTTTGAATCGTATGTCTT
ATTTCTTTTTCAGATGTTTTTTGTTTTGTTTTTGACATTACTTTAATTAG
TACTTTCAAGGGATAATCACTATTTAAGATTTTTTTGGCCTGGAGACACT
TTCTGTTCTTTGTCACTGCATTTTGTCAGTTTTTAGATTACTTCAAAATA
ATGTTCTTTAAAGGGATGATCAGAATTTAAGATTTGGAGCAATACTGGCA
ATATCTTTATTTTCATTTTATTTTTACCTTTTCAAAAATAAATAGACATC
TGATTTTCAAAAGGTACCTGTCAGCCAAAATTTTCAAGCTATATTGTTTC
GGTGAGAGGTAGTTTATGCACTTGGTATGTTTATGATCTAAGGTATAAAG
TTGAAAGTTATTTAAAACATTTCCTCCCTTGATTGGCTATAATTTTTCTT
TAAATCAGATTTTTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTGGAAA
TAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAATATTGTTATGG
ATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTTTGTCGAGGTA
AATTATCTACAGTTCTATTAATCCAATTAGCTTTAAAAAGTTTTTTCAAC
AGCCAGACTTTTCCACTAATTTAATGCTGAATTTTAGTCGTAACTGGTCG
TAATAATATTTTAAGACTATTGATATTCTAGGAAGAACCAGAATTGACAC
ATTTGTGATTGTTTCGTCTTAAAAAACTAGTTCCATTCAAATCTCAAAGC
TCTTTGCTTTTCTTTTATATAGTAGTGACCAACTACAACCTTTCACTTTT
CTCCTTTTTCGCAGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGC
GGTACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGG
ACCTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCA
ATAAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAA
GGAATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGGTGAGTTGTA
CCAACATTTTTTGGACCTACCCCGATGGTGGGGTGGAGGTCCTATAAATT
AATCTTTATCCGTTTGTTCGTTCGTTCGCTCGCTCGCTCGCTCGTTATTA
GCTAACCTCATGATTGGCTCATTAGTTTTTTCTGATTTTTTTTCTCAAAA
AACGCATGTTTATCCATAAGAATCACTATTAGTAATTTTGCTCACAAAGT
CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCACTTGTTGTATTCTAACTTCAACTTTTTCTGGGGACCT
TTGTACGTAGAGGGGGTAAGCAATATTGAAACACTGGGAGGATGGAAATG
TAGGGGGTCTAATAAAATGGTGGCTTCGACACAGAGCAAGTTTCCTTCGA
AACAGATTTTCTTTGAAAGAGGGGCGGGTAAAGTTTCATTACAGATAGAG
CTTTCATACCCCTCTGCAATCTATGCCACAGTCAACTTTGATTATCGATG
GTTTCTAATGGCAATGTGAGTCAGGCTATCAATATATTAGAAAAAGGTTG
CTTAACTCACATTGAGTTATAGTTGGGTTCTATGAATTTGAGCGCTGTGA
ATCTATGCTATGTTTTTTTCTATTATTCCAGGAGAACCACATATTGATGG
AGAGCCAGGAGATTTGATTTTTAAAATTAAAGAACTAAAGTAAGTAAAGA
TTCATGAAAAACCAAACATTTTTACCAAAAATTTTGTGCCTAATAAAGAG
GGATTTGGTTTTAACGGCTGAAACTCCTCATTTCAGAGGGTCCCAAGTGA
GTGTTTTGATAGCTAAAAATATTTGAAAAAGTTCATAAAAGTTAGTTTAG
TACTTTAACTCTCATAAGTTTGTTCAATTCATAGACATAAAACATTCGAA
GGAAGGAAGGTTCGAAATCAGTTTAGTACTAAACTCTCATAAATTTGCTC
AATTTCTAGACATAAAACGTTCGAAATCAGTTTAGTACTAAACTCTCATA
AATTTGTTCAATTTCTAGACATAAAACGTTCGAAATCAGTTTAGTACTAA
AATCTCATAAATTTGTTCAATTTCTAGGCATAAAACGTTCGAAAGAAGGG
GAGATGATTTGTTCACTAACATCACTATCAGTTTAGTTGACGCCTTGAAC
GGTTTCGATATGGAATTCAAACATCTAGATGGTCACGTGGTCAAAGTTCA
CCGCGAAAAGATCACATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAG
GGATGCCCAATTATCATAATAATTTGGACAAGGGTGTCTTAGTGATCACT
TTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGG
TGAGAAATCTGGTATAATCTCTGATAATTATGATTCTAGGGTTTTAATCA
ATAAGGTATATAAAGATCTCCTATGAATCCCCTATGTAAAGCGCTTGATT
GGAAGTAACACTTGCAGCTAGAATTCGAAAAATGTGAAACACAAAACAAA
GAAAGTGCTAGATTCAATCCGTTATCCAAAATGCGGCGCAAATTTTTTCT
TTGCCTAGAAAAGGCTGAAGATACCTGGTAGGTGTGAAGTTGTTTGAAGA
GGCGTTGTAATCCTTTTGGCAACCTTTGCCCTAAAAAAGGAAAGGCTGAA
GATATTTCTCTAGCCTTCAACTTGACAACTTGAAGCTCGGTTTCTGATTA
ATTTCAGAAATAATTATCGCTCTTTTGATAGTTTCCCTTCGTTGGTTTTC
TTCCTCAAAATTCTATAATAAAGGTTGTGGTTGTAAGTTTTAAAGCTCTA
GAAAATTGAGCTTTTTCTGTATCTGGCTGATTTCGATTTGATTTGATTTC
TTTTTTTTTTTTAATTTCAGCAATAAAAACGATATTGAATCAAGATTCGA
AACAAAAGATATACAATGGATTACAAGTATGATAGATAGGAAGCAATTGA
CATTTATTATTTCATAGGTAGGATTTAAAAAGGGCTTTATATTTTATCGT
CAGAAACTTTGAGGCAAAGCCAAAATGGCACTTTGATGTAAACTTATCCT
TGGCGGAATTTATTTTTGCGATGATTAGACATTTCTATTGGATCGCCATC
GAGTCTCGATTTTCAGCGAATTTTGTCTTAAAAATACACAAAACGTATTT
TCCGTTTGATAACAGTTTCCACGCCTATAGCATAAGTGTGTGTGTTCTCA
GACCTGGAGTGGCCCAAAATTAAAATCCCATTTCTAGCTCAAATGGCTAT
GATATGTTGGGAAAAATTTCTATTTTATGTTTTTCGTCAAATTTTTTCAT
GAATGTATTTTTTTGTTCGTTCGATTTTTAGATTTATATTGATGTATACA
TATTTAACTTTTTTTCGAATTTCTAGGCCTTTTACAAAGTTCAAACGTTT
TATAGAAATTAATTTTGGAAAATTCAGAATTTCATTGCGTTGTTACAAAC
TTCGAAAAACAGCTTTTAAACCTTAATTTTCATTTTTGATACAGGTGAGA
AATGTTTTTGAGAAAATTAAGATTCTTTATAATGTTTATTCCAGTTTTAT
TTGTTGTTTTTCTTGTAAACTTTATTGAATAAGAGCAAAGTTTTTTGAAA
ATGAATTTATTTAAGAAAGGTTACGATACAAGAAAATGCTTGTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002889-exon-sc0000023-1575043694:742306..742525 | TCONS_00002889-exon-sc0000023-1575043694:742306..742525 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1575043694:741635..741738 | TCONS_00002889-exon-sc0000023-1575043694:741635..741738 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1575043694:741079..741217 | TCONS_00002889-exon-sc0000023-1575043694:741079..741217 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1575043694:740586..740811 | TCONS_00002889-exon-sc0000023-1575043694:740586..740811 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1575043694:738937..738994 | TCONS_00002889-exon-sc0000023-1575043694:738937..738994 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1575043694:738277..738548 | TCONS_00002889-exon-sc0000023-1575043694:738277..738548 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1575043694:736979..737755 | TCONS_00002889-exon-sc0000023-1575043694:736979..737755 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:742306..742525 | TCONS_00002889-exon-sc0000023-1510915933:742306..742525 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:741635..741738 | TCONS_00002889-exon-sc0000023-1510915933:741635..741738 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:741079..741217 | TCONS_00002889-exon-sc0000023-1510915933:741079..741217 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:740586..740811 | TCONS_00002889-exon-sc0000023-1510915933:740586..740811 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:738937..738994 | TCONS_00002889-exon-sc0000023-1510915933:738937..738994 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:738277..738548 | TCONS_00002889-exon-sc0000023-1510915933:738277..738548 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1510915933:736979..737755 | TCONS_00002889-exon-sc0000023-1510915933:736979..737755 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:742306..742525 | TCONS_00002889-exon-sc0000023-1491911889:742306..742525 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:741635..741738 | TCONS_00002889-exon-sc0000023-1491911889:741635..741738 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:741079..741217 | TCONS_00002889-exon-sc0000023-1491911889:741079..741217 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:740586..740811 | TCONS_00002889-exon-sc0000023-1491911889:740586..740811 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:738937..738994 | TCONS_00002889-exon-sc0000023-1491911889:738937..738994 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:738277..738548 | TCONS_00002889-exon-sc0000023-1491911889:738277..738548 | Clytia hemisphaerica | exon |
TCONS_00002889-exon-sc0000023-1491911889:736979..737755 | TCONS_00002889-exon-sc0000023-1491911889:736979..737755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000023 | supercontig | sc0000023:736979..742525 - |
Blast
BLAST of TCONS_00002889 vs. Swiss-Prot (Human)
Match: DJB11 (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 2.169e-142 Identity = 205/346 (59.25%), Postives = 257/346 (74.28%), Query Frame = 2
Query: 38 FNFSVLFFSRDFYKILGVRKDATDRDIKKAYRKLAMKWHPDKNPDDPKAQDKFQDLGAAYEVLSDADKRKTYDKHGEEGVQKMXXXXXXXXXXXXXXXXXXXXXXXXXXNKQRGHGEIPKGGNIVMDLEVTLEELYTGDFVEVLRAKPFAETTSGTRRCNCRMEMRTHQLGPGRFQMMQEEVCDECPNKRFIIKDQLLEIEIEQGMQDGQEYPFVSEGEPHIDGEPGDLIFKIKELKHKTFERRGDDLFTNITISLVDALNGFDMEFKHLDGHVVKVHREKITWPGAKIKKKGEGMPNYHNNLDKGVLVITFDVDFPKGELAEEQKEAIKTILNQDSKQKIYNGLQ 1075
+ + RDFYKILGV + A+ +DIKKAYRKLA++ HPD+NPDDP+AQ+KFQDLGAAYEVLSD++KRK YD +GEEG++ GF G + IP+G +I++DLEVTLEE+Y G+FVEV+R KP A G R+CNCR EMRT QLGPGRFQM QE VCDECPN + + +++ LE+EIE G++DG EYPF+ EGEPH+DGEPGDL F+IK +KH FERRGDDL+TN+TISLV++L GF+M+ HLDGH V + R+KIT PGAK+ KKGEG+PN+ NN KG L+ITFDVDFPK +L EE +E IK +L Q S QK+YNGLQ
Sbjct: 15 YLIGAVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDR----NIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRDKITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLLKQGSVQKVYNGLQ 356
The following BLAST results are available for this feature:
|