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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001614 ID=TCONS_00001614|Name=TCONS_00001614|organism=Clytia hemisphaerica|type=transcript|length=3256bpRun BLAST on NCBI transcript from alignment at sc0000011:915658..925385+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001614 ID=TCONS_00001614|Name=TCONS_00001614|organism=Clytia hemisphaerica|type=transcript|length=9728bp|location=Sequence derived from alignment at sc0000011:915658..925385+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001614 vs. Swiss-Prot (Human)
Match: FERM1 (Fermitin family homolog 1 OS=Homo sapiens GN=FERMT1 PE=1 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 5.706e-103 Identity = 202/509 (39.69%), Postives = 291/509 (57.17%), Query Frame = 3
Query: 75 SFTLNVHVTDLNTQKSIEVNL----ESHVGFVMLEIVEKLDVTADYSDHALWWPEKKIWLTKARLSLASYGIINDTQLLFTPQHKSVRLLMPDLQVFDMKVNFAVDVLHTVSELCNELGVRHSEELSFMRP------YEXXXXXXXXXXXXXXXXXXXSDDASSQGSFGNGTLGRSTS--QEP--RTPSSPASNRLNNSYNPNDTLNPYSTAMSPMLAHSPNAPTQDQLELIGLGKSVLERASFNCGWLSSSESLMQQGIKEYDTLYIRYKYFNIFDLNPKIDEVRINQLYSQAKLQILTEEIDCTEEESITFAALQFQVK--VASQNPQGNSGPDEVDDIDSALSELQMTLEGSSQQPSDIPTTHTRPTMSHIPEMFDNLSIIK-KKTFGTSKTNYYFQFKDTHIAYYKTMADAQGPPVQKFNLKGCEVTPEVNINKDKYNIKLTIPGPD-MYEMEMGCSSPQQYVKWMAACRLASKGKTMADPTYEMEMSXSLPTCLQGENNGRSNI 1547
S+ L V V N ++ +V L + HVG VML++VE+++++ D+SD ALWW +K WL K +L YG+ D +LLFTPQHK +RL +P+L++ ++V+F+ V VS++C L +R SEELS ++P + K K+ N S +S S G ++ + +P TP+S ++S P + +LA S + + L + +S++++A N GWL SS SLM+QGI+E + L +R+KY++ FDLNPK D VRINQLY QA+ IL EEIDCTEEE + FAALQ+ + S Q +G EVD+I++ALS L++TLEG ++ IP++ DNL + + KK + Y+F FKDT IAY+K QG P++K NL+GCEV P+VN+ K+ IKL IP D M EM + C QY +WMAAC LASKGKTMAD +Y+ E+ L N S +
Sbjct: 11 SWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLKLVEQINISQDWSDFALWWEQKHCWLLKTHWTLDKYGVQADAKLLFTPQHKMLRLRLPNLKMVRLRVSFSAVVFKAVSDICKILNIRRSEELSLLKPSGDYFKKKKKKDKNNKEPIIEDILNLESSPTASGSSVSPGLYSKTMTPIYDPINGTPASSTMTWFSDS--------PLTEQNCSILAFSQPPQSPEALADMYQPRSLVDKAKLNAGWLDSSRSLMEQGIQEDEQLLLRFKYYSFFDLNPKYDAVRINQLYEQARWAILLEEIDCTEEEMLIFAALQYHISKLSLSAETQDFAGESEVDEIEAALSNLEVTLEGGK-------ADSLLEDITDIPKLADNLKLFRPKKLLPKAFKQYWFIFKDTSIAYFKNKELEQGEPLEKLNLRGCEVVPDVNVAGRKFGIKLLIPVADGMNEMYLRCDHENQYAQWMAACMLASKGKTMADSSYQPEVLNILSFLRMKNRNSASQV 504 HSP 2 Score: 183.726 bits (465), Expect = 4.152e-48 Identity = 90/221 (40.72%), Postives = 143/221 (64.71%), Query Frame = 1
Query: 1474 QHTKWRCLXACRLASKGKTMADPTYEMEMSGVRTFLNMQNDVKDSSKXXXXXXXXXXXXMHPEDFVPQRVLSKYKSKQIAARILESHTAFTKLGVIEAKMNFIRQWQALPDYGVSKFNCKFRDSKKKQEIIGIGTKGIVRFDLNSRTVIKQWRYSTMKNWNVNWETREMIVTCEGETII-FSLLGGDIRLVHEYIGGYIFLSMR-KDVNAALDVEMFYKLT 2130
Q+ +W + AC LASKGKTMAD +Y+ E+ + +FL M+N + + + M+PE FV R ++KSKQ+AARILE+H ++ ++EAK+ FI+ WQ+LP++G++ + +F+ S KK +I+G+ +++ D + + WR++ +K WNVNWETR++++ + F+ L D ++VHEYIGGYIFLS R KD N LD ++F+KLT
Sbjct: 460 QYAQW--MAACMLASKGKTMADSSYQPEVLNILSFLRMKN----RNSASQVASSLENMDMNPECFVSPRCAKRHKSKQLAARILEAHQNVAQMPLVEAKLRFIQAWQSLPEFGLTYYLVRFKGS-KKDDILGVSYNRLIKIDAATGIPVTTWRFTNIKQWNVNWETRQVVIEFDQNVFTAFTCLSADCKIVHEYIGGYIFLSTRSKDQNETLDEDLFHKLT 673 The following BLAST results are available for this feature:
BLAST of TCONS_00001614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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