TCONS_00001614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001614
Unique NameTCONS_00001614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001614 ID=TCONS_00001614|Name=TCONS_00001614|organism=Clytia hemisphaerica|type=transcript|length=3256bp
AATCTGCTGTCCATCTTTGATTTGAGAAaatttcAACAAAGATGGCAACC
CTCGCTTCTTTGAGTAGCACTCGATCGTTCACCTTGAATGTTCATGTGAC
TGACCTTAACACTCAAAAAAGTATTGAAGTCAATCTCGAAAGCCATGTTG
GCTTTGTCATGCTGGAAATCGTTGAGAAATTAGATGTGACTGCTGATTAC
TCAGACCATGCGTTGTGGTGGCCAGAGAAAAAAATATGGCTAACTAAGGC
AAGATTGTCACTGGCATCTTATGGAATTATTAATGACACTCAATTACTTT
TTACACCTCAACACAAGAGTGTCAGACTGTTGATGCCTGATCTCCAGGTC
TTTGATATGAAAGTAAATTTTGCTGTCGATGTATTGCACACAGTTTCAGA
ACTTTGCAATGAACTTGGTGTGAGACATTCAGAGGAGCTATCATTTATGA
GACCATACGAAACTGGGACGGCCAAGAAAcgaaaaaagggtaaaaaaggT
ACAGGCTCTAACACTGGATCAGATGATGCAAGCTCACAAGGCAGCTTTGG
GAATGGCACTCTTGGACGTTCTACAAGTCAAGAGCCAAGAACTCCAAGTT
CTCCAGCTAGCAATAGACTAAATAATTCTTACAATCCTAATGATACTTTA
AATCCATATTCCACCGCAATGTCACCCATGCTTGCACACAGTCCTAATGC
GCCTACACAAGATCAACTAGAGCTTATTGGCCTTGGAAAATCTGTATTGG
AACGAGCAAGTTTCAATTGTGGATGGCTTTCTTCCTCAGAATCTTTAATG
CAACAGGGAATCAAAGAATACGACACATTATACATAAGATAtaaatattt
caacattttcgaCCTCAATCCCAAgATTGACGAAGTTAGAATAAACCAAT
TGTATTCACAAGCCAAATTACAAATCCTCACTGAAGAAATTGATTGCACA
GAAGAAGAATCAATCACTTTTGCAGCACTTCAGTTCCAAGTGAAAGTTGC
ATCACAAAATCCACAAGGGAATTCTGGACCAGATGAAGTCGATGATATTG
ATTCTGCTTTGAGTGAATTACAGATGACTCTAGAAGGAAGCAGCCAACAA
CCATCTGATATTCCTACAACTCACACCAGGCCTACAATGAGCCACATACC
AGAGATGTTCGATAACTTGAGTATAATAAAgAAAAAGACGTTTGGCACTA
GCAAAACAAATTATTATTTCCAATTCAAAGACACTCATATAGCTTACTAC
AAAACCATGGCTGATGCTCAAGGTCCACCAGTACAAAAGTTCAATCTTAA
AGGCTGTGAAGTTACTCCTGAAGTTAATATAAACAAAGACAAATACAACA
TTAAACTCACCATACCCGGACCTGATATGTACGAAATGGAAATGGGATGT
AGCTCACCTCAACAGTACGTAAAATGGATGGCAGCTTGCCGACTTGCGTC
CAAGGGGAAAACAATGGCAGATCCAACATACGAAATGGAGATGTCTGNCA
GCTTGCCGACTTGCCTCCAAGGGGAAAACAATGGCAGATCCAACATACGA
AATGGAGATGTCTGGTGTTCGCACTTTCTTAAACATGCAAAACGATGTGA
AAGACTCCAGCAAAGATGATGGGGATTATGATGCTGGAGCACATGGTGGT
ATGCATCCAGAGGACTTTGTTCCCCAAAGAGTACTGAgcaaatacaaaag
caaacagATTGCTGCACGTATCCTAGAATCACACACCGCATTCACTAAAC
TTGGTGTCATTGAGGCCAAGATGAATTTCATCCGGCAATGGCAGGCTTTA
CCCGATTACGGTGTTTCCAAGTTCAACTGCAAATTCAGAGACTCGAAGAA
GAAACAAGAAATCATTGGCATCGGCACCAAGGGAATTGTTCGTTTCGATC
TCAACAGCCGCACAGTGATCAAACAATGGAGATACAGCACCATGAAAAAC
TGGAACGTCAATTGGGAAACCCGCGAAATGATTGTGACCTGCGAAGGAGA
GACCATCATTTTCTCACTCCTTGGTGGAGACATTCGTTTAGTCCATGAAT
ACATTGGTGGCTATATTTTCTTGTCCATGAGAAAGGACGTGAACGCAGCT
CTCGACGTGGAGATGTTTTATAAATTGACTGGTGGCTGGAATACCATCGG
TGGTGGTGAAGGCAAAGATTGGTCCTCCAAACCGGGGTTATAATAGAAAG
AACATTATAGAAAGAACATATGATCGAGAGTTTCTTGTggtgaaaagaaa
aagagttcAACCAAATCAACAGGCCACGTGATTTGACCATGCTCAGACGT
TGTCAATCGACGTATGTTTTGGAAAAGTAGAGTTGTGAAACCTCTGAATG
CTTTCTCACCATAACAGAGATGATTTTGGTATGGTTGCagcatttaaaat
atttcagcCGTTTTCGATCTGCAACGTCTGAATATGATCAATTCTGGGGC
CTTTCGTTGGTTGGTTGGCTGGCTGGCTAGTAGGTTTATTTCTTAAAGGG
TGTTGCTACTGTCTCGCCCATAAGAAAGGATTACGAAATAAATAATTAGA
GAACTATATACAATGACAATACATGCAAAATGTGAGAAGCATTCTCAATC
ATTGAAGAAACAGCTAAAATACGGTTCTTTAACTGGTGGACGCTGAaaat
gtagatttttttttaaaatgaattttagttttttcattctttttagatat
ttttgtaCTTAAGCTTTTTGTTGATGTAACGTAACTTGTACCCAGGTGTA
CCAATTAAACTTGTAAGGAAAGTGAGGAAAATACCCTCAAACATTTTCTC
TGAATTCATTCACAAGAGCCAAGACTCTATCTAACAACATTCAGAGAACT
TTCAAGCAACCTTTTGTTGTACCTTATTATTTTAATTTCCGACATATGGT
AttgaattttcattattttttgtataTTGTGTTGATTATCCCAAATTTTC
GAACCATGCTTGTGAAAATCTGTTAGTTTTATTTAGAAAATTGGTTTATG
AGTTTCCTGGCCTGTGACCACCtgatattttaattctttaccAACTTTCT
GCAAATAATCATAACATTTTCTTGTTTTAGGGTCCTTCGAAAAAATAAct
ataaattattatttttagtttGTACCATCTTAAGTATAATATGTATCCAA
gatattttttcatgtttttgttttcttttttttttgttttcctttatAAA
TACATATTATAACAACGcaatttttaaagaacaaaagaagaaattgtcGT
CTTGAA
Run BLAST on NCBI

transcript from alignment at sc0000011:915658..925385+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001614 ID=TCONS_00001614|Name=TCONS_00001614|organism=Clytia hemisphaerica|type=transcript|length=9728bp|location=Sequence derived from alignment at sc0000011:915658..925385+ (Clytia hemisphaerica)
AATCTGCTGTCCATCTTTGATTTGAGAAGTGAGGCGGCGTCTCAGCTTAA AATTTTTTAtatgtctttaaaatttttgataaagatttcaagtttttttc tGTATAATTTTGACTGGTAATGCTTAGATATTTCATGATGtggttttcat ttatttttatagCTGAATATATAAGTGAAACCAAAGGAAGCTCGCATACA TAAAGAAGCAGACGTGGTCTTGTTTTGGGGgtgtttgatgatttttttct agaatttcAACAAAGATGGCAACCCTCGCTTCTTTGAGTAGCACTCGATC GTTCACCTTGAATGTTCATGTGACTGACCTTAACACTCAAAAAAGTATTG AAGTCAATCTCGAAAGCCATGTTGGCTTTGTCATGCTGGAAATCGTTGAG AAATTAGgtataaagtttttatttttacctcCACTGTTTTTCATATCAAT CTAACCTTTTTGGAATGATAGCTAGGTGTTCCGTTAAAATGAAGCAAGAA ATTCTGGTAAAGTTCTATTAGTTTGTTTGATGTTTTAAATGTGTCTTTTC GGGGATTAAcagtttttttcataaataaTATTAGAACATAGAACATGACC GGCTGTCAACGCACCAGGCGGTCAtagaaaaattgttctgttcacGTCAA ccgcccgcatcatattttccgctgattttctggtgcggagatgcggaaaa aaatctgtgttcttttaaagtatagctttttttctcaatttgctCTGACg gccatcaaaaaattgttttgctcgcgtcaCCACCCGCCCCTGAATTACTG GCGTCCtcccgcccgcatgcatttttaacacccgttgcgaccaGTCAGGC CCTCCTTGGTCTTttataacattagttcggatagaataaaaacatacctg atcaacacaaccaaactctttccttcccaacaactttcgtttttgcctAT GTAGGTTTTGAAATCCAcaaagtaatgaacctcttatagctttatctgaa taaatctggttgaaaaccttctgtcgggtttcattccgtacgttttttat ccacaagactatttacaaattattttctttaacaggCTTTAAATCAACAT Tgtattgacatatttaatgatgtcataatcagcgccgtgcatattttgtc agtgccgtgcatattttgtcaacatctttttcattggataaataccaata aaatataaatttatcgcccgcgagcatggcttagctaagcgcatctctct tattcattatctaagaattgaagcgaaCAAAGATTACCGCGTgggctgat agcggacaaaggttatttgaagatatattcagttataatccaaggtagaa caatcTAAACATAGAGAGGAGGTATTTTTtcgtgctctatacgatgatcg gtattttttttgaattctatgtttagatttttctacccagccccgttgct acgTACGCGCCCcttgttgctaagacctttgcttgaaatcaaaaagcgaa accaaaaaaatttagcacacactgccgtttgcgtagtATCAATAAAGTGA AAGGAGGTCATGACtggttgcgacgcgaacagagcattttttcgatgacc acCTCAGACTTTAcgaacacctgatttcttaacACCTGATTTTTTAACAC CTGACAATCTCAACACCGGACAATCTCAACACCGGACTTGAGTCTGGTGC GCCTGGTATACATTATTTTGAAGGAAACTTTGTTCCGTGTCCAGAAgtta aaaaaagttagtaccggAACTAACTCCGAACAAAAGGTTTCCGGTACTTT TTTTTGGCACTGGACAAACACACCAGACTGTCCAGTGCGTTGACAGGGTC GACCCTTTGCCCAGGTCAACCCATGCtaatgtgaggggaattgggtaccg tcaactgctctagctTGGGAGGATTGGTTGAAACATCTGACTACAATCGA TGACggaatacttggcacaaaagggaaatccgccaggaagttttgaaacc acatttgcaagtgctctaaagtagtttcgaagggtagagttttaaccctG AGTTATAACGCTATACAGCGCTATAGACTTAAGactccaaaagttcaaaa atggtccagtagggcttgaaatatagcctagaatgtagaaaccaataaat ccctcccagattgaaataatcaatgaaatcaagttgaaggccctaAATTG ACATTCTTGCTTGAActtcaattttcataaaatgatAAATTAACTGGCCA AAtgattagccaaaagtgccaatatgttatggcactgattttagttgata tctggtctgtattttcacttactgttaaatctctttgacaacaaatttgt tttgataactccaccaagtttatcaatcctacttcttcgttcctcttaga gtgcacagacactctTGTGTGTTcaactacggattttttttatatttcca tttaaaagcctactcggtgcgaaagagaaatagtgtattttttaatacgc tgttcattaactcaaatcaaatgactttggaggttcggtgaaatcaCCAC catggccaaattgccgtcccatgttttgtcagatagtcccaagttagagc agttgacagtagtcagttcaaggtgctttCAGGGAgctaattgaaagcgt ctatagttgcaaaaataagcctcaaagcctcctgcgactcaaccaaatag aaataggccaatgcaatgacttctttcaaactttcaaaggTTTAAACTGC CACTATTTGCCTACTCTTACAAATAGAATAGGCAGGGTAgaaagttggct gtctaaaaGGCAGAATTTAtgagataaaaaacaaacatgcAGAATTTTCT CCCACATCTCTTCAGTGTTTACAAAATACCAAGattttcttctaaaaaaa acaacatcttCCTGTAAAATGGGAACAGCCGAATTTCATCTCTGAAAAGG CGGTAAACAGTGGTAAACAAACTGTGTTTCTGGAATGAAAATGAGGGAAA ATGTTTTACACCTGTTTTTTTATCTGTATCTAATGAAATAACTACTTTGT AGAAAAAATAATACAGctcaaaattgaacaaaaagaattctttttatata ttatttgaGCCCAACAatctgttttttcaaaattgtttcgGATTGGGGAT TTGTACGTTCTTTTATTAGTGCTCGCCTACAGAATTCCTCATTCACAACT AAAAATGGTGATGAAAttggtttaaaaattaaaagtttactTTGTAGCCC AATAATGACATTTTCAGCAACATTTATCGTAACATGCAGTATCATGCCCA AAAAGTAAATCCAAGATTTGATCAAAATAAATTGATCTGGGAGGGCAATT TGAGTTGATCATCTGTATTTTGTTTGGGAAGTTAAATGCTGAGGATTGAC CAGTTAGGAACAGGCATCTGGCCCCTCAACACAATCATGGCTTTTCAAAC ATGACAGTGCATTGAAATTTATTAAAGCTTCCCAAGAGCAGAGTCGTTAA CAGATAATATTTGGTCTTTCCATCTTTTGATAtgtatcaatttttaattt tttttaagtctTGTAAATTTCATTTTAGATGTGACTGCTGATTACTCAGA CCATGCGTTGTGGTGGCCAGAGAAAAAAATATGGCTAACTAAGGCAAGAT TGTCACTGGCATCTTATGGAATTATTAATGACACTCAATTACTTTTTACA CCTCAACACAAGAGTGTCAGACTGTTGATGCCTGATCTCCAGGTCTTTGA TATGAAAGTAAATTTTGCTGTCGATGTATTGCACACAGTTTCAGAACTTT GCAATGAACTTGGTGTGAGACATTCAGAGGAGCTATCATTTATGAGACCA TACGAAACTGGGACGGCCAAGAAAcgaaaaaagggtaaaaaaggTACAGG CTCTAACACTGGATCAGATGATGCAAGCTCACAAGGCAGCTTTGGGAATG GCACTCTTGGACGTTCTACAAGTCAAGAGCCAAGAACTCCAAGTTCTCCA GCTAGCAATAGACTAAATAATTCTTACAATCCTAATGATACTTTAAATCC ATATTCCACCGCAATGTCACCCATGCTTGCACACAGTCCTAATGCGCCTA CACAAGATCAACTAGAGCTTATTGGCCTTGGAAAATCTGTATTGGAACGA GCAAGTTTCAATTGTGGATGGCTTTCTTCCTCAGAATCTTTAATGCAACA GGTAATTTCTGAGTTATGAATGATTAGAGAGTTTTTCtacaaattttcag aatttttctgaaattcataggaaaaattcaaattagttCAAACTCTCATA GTCTTAATGTCATATTTTTCTTTGAGTCAAAATTgtctgataattttttt tattgaatactTTAATGTTGTCATTTTAGAGTCTTATCTATAATCTGTTG GATTACTGGCTATTTTAATTCTAAGTAGAGTTTATTTAAATTAATAACAT AAACCCATTCAGATATTTCTTTCAGTTTTTCAAATAACCATTATATTTAT TTATGTTTACTTTCCTTGCTCTGTTTGAGCAATCCTGATTTTTCAACGTT TCCTTTGTCTCTAAATTTCAGGGAATCAAAGAATACGACACATTATACAT AAGATAtaaatatttcaacattttcgaCCTCAATCCCAAggtattttttt tcacaattagTTTTTTTACAGAAATTAAAATTCAGCTATTGTACTACTCT TTAGAAATATaggccagggcaaaccagtccaacatttcatccaacatgac ttggaaaaaaagtgaaaattaaaaaaataaagaaaaaagtaccatcaaac caatccaacacgaaaaattacacaattcgATGAGAGAGCTTCTTTAATCT CGccgcaaatgttggatgaaatgtatgatggcgatcaaacttcatccaac accgtccaacacaatttttttcttcttattttgaattttcattttttttc aaaaatttgaattcatgaaaaaaggcatgttggatgaaatgtatgatggc gatcaaacttcatccaacaccgtccaacacaatttttttcttcttatttt gaattttcattttttttcaaaaatttgaattcatgaaaaaaggcatgttg gatgaaatgttagATCGGTTTGCTCCGGCCTTAACCAACACTTAAGGCTA ACCAGGCATGATGCACCAGGTATAGCTAAAAAGAGTTGTGTTTGTTTGCT CGTATATCTGAGTTTATATATGGGTCTGACCTTTTATGTGATTAACTTTG TCAAACTTTTACCCAACCATCTTTTTTCATTAGATTGACGAAGTTAGAAT AAACCAATTGTATTCACAAGCCAAATTACAAATCCTCACTGAAGAAATTG ATTGCACAGAAGAAGAATCAATCACTTTTGCAGCACTTCAGTTCCAAGTG AAAGTTGCATCACAAAATCCACAAGGGAATTCTGGACCAGATGAAGTCGA TGATATTGATTCTGCTTTGAGTGAATTACAGGTACTTCATAACTTCTGAT GTTATTAGATTAGGCGTGTGGTACAGGTTAGAAACAGGACAGACGATTTT TAACGCCAATCAGTTAACTGAACCCCGTCTCTCTTGAAATCACAATAATT GTGCTACCAGCAGACGCTTCCCTGCCTTGTTGAAATATGTTCTGTATGTT AAGTCTGAGGATGACTATAATAAATGAGAATTCGATTATCTTCTTTAAGA TGACTCTAGAAGGAAGCAGCCAACAACCATCTGATATTCCTACAACTCAC ACCAGGCCTGTAAGTATCCTTATTAATACATCTCAACTATTCTTGCAGTG TAAGTATATATAAGTAAGATTACTTAATCTTTCTTCCCAACCCAaattcc tgtttttttttcaacgcAACATAATGCTGACTTCAAAACCAAAAGTTGCA AGGGAGATAATCTTCcgagaaatttttcttgaaagaCCTTTTGATAAGAT CAACGTATTTTAATCGAAAAGTTGCAGACTTTATTGTtataaaatgttgt ttttataaCTTTTACATCTTCAATTTTAGACAATGAGCCACATACCAGAG ATGTTCGATAACTTGAGTATAATAAAGTAAGTTGGAATCACCATACCATA TTTAGAAATGctttttgctccggcctaggagcctttaattctctcttccg acggtcaagacattttttgtttgtttatctaatccgataatctattccga tttaataaaaacggNATATTTAGAAATGCTTTTTTATTGGCTACTTCAGG CTACTTACTATGCACAAAACTATAAAGTcttatttatctttattttataa atctTATTTCGCGCGAAAAATTATTCTTCTATAAAATAATGTGCTCAAAA AATGTAATGCTCAATTATAGTAGCAATATCATTTGAAAGtaacaattttc ttttcaggAAAAAGACGTTTGGCACTAGCAAAACAAATTATTATTTCCAA TTCAAAGACACTCATATAGCTTACTACAAAACCATGGCTGATGCTCAAGG TCCACCAGTACAAAAGTTCAATCTTAAAGGTAAGTTTTCCacagtttttt gattttttaaaaaatcattgattttttgaagtgtcttttatattgaaatg cagtcatttttttaaatcgaaaaaccaaaaagatcaaaaagGAAACTAAA AGAATTCCATAGAAATTGCATTAAAAGTATTTTCATTCCCAATTCCTATT TCTTAACTGGGCCCACCAGAAACTTATTTGATGTCTATTTTGTCTTGTCT GTCTGGTAGTggtttagtttattttttttttacttttcccaAAACTCAAC TTGGAATTGGTTTGTAATCAGTATTAGGCAAGTTGTTACCAAAATCTAAG AAAGAACGGCTTCCAAACTAAGGGTTTCTTGTATAGACTATAAGAGCTAA GACTGAGATCATAACACTGCTTAGCATGTTCTTTCTCTAtcttcaatctt tttatttAGGCTGTGAAGTTACTCCTGAAGTTAATATAAACAAAGACAAA TACAACATTAAACTCACCATACCCGGACCTGATATGTACGAAATGGAAAT GGGATGTAGCTCACCTCAACAGTACGTAAAATGGATGGCAGCTTGCCGAC TTGCGTCCAAGGGGAAAACAATGGCAGATCCAACATACGAAATGGAGATG TCTGNCAGCTTGCCGACTTGCCTCCAAGGGGAAAACAATGGCAGATCCAA CATACGAAATGGAGATGTCTGGTGTTCGCACTTTCTTAAACATGCAAAAC GATGTGAAAGACTCCAGCAAAGATGATGGGGATTATGATGCTGGAGCACA TGTGAGTTttatttttaccaaaatgaaaattcCATTCTCACTCTATGAAT GTTTCTGTCATGAAATATAGTAATCATCAACGTTAGTTATTACATAATTA AGAATCTTTTTTCATAAAGAAAGAAACCTTGAGATCTTGTCTTACTGGCG TTTTTTTAATTACCCTTCATTAACTTCACCTCTTTTCACACATCATAGGG TGGTATGCATCCAGAGGACTTTGTTCCCCAAAGAGTACTGAgcaaataca aaagcaaacagGTATGTGTGATAACCTAGCATGTGATAATGATTTCTTAA GCATATGTTTGATTGTGCTCAATATAGTTTAAGAGTGAACCTTTTCAGTT CTTGTCATTTTGAACAATGGTTGATTTTAAATCACCTTAAAAAAAATATC TGTTAACAATTCGAACCGGGAACCTTTATTCATAAAGGTTTTGATGTATT TTCTttgttatacttcttaaaacTTTTACTGTTGTCCAAAGTGAATTCCA TGAAAAATACAGTGTATATATGTTTTCCCACACTGTTTAGATTGCTGCAC GTATCCTAGAATCACACACCGCATTCACTAAACTTGGTGTCATTGAGGCC AAGATGAATTTCATCCGGCAATGGCAGGCTTTACCCGATTACGGTGTTTC CAAGTTCAACTGCAAATTCAGAGACTCGAAGAAGAAACAAGTAAttttta attaactttttcactaaaagtAATATTTATATTGTCGTTGTCCAATTAAA GAAATTATACCCAAGCTATAAACGCAAATTGGTTACCCTTGCGTTAATTC CAATTTGAGCCGAGGTAATTCTCGAAAACCCTGCTTTTAGCGTTAATAAA TTGTCACACTCGTATTTCCGCGTTAAATACTTGATTCGTGTAACGaggta tatattttttgaatacaGAGCAGTCATTATTGTCTGTCATGAAATGCAAT TTTAGTCACTAAAGTAGTTTAAAGTTATATTTCTTGAGAAATTTCACAAA TCGCTTAACCTTTTTTCATTTCTCCTCAGGAAATCATTGGCATCGGCACC AAGGGAATTGTTCGTTTCGATCTCAACAGCCGCACAGTGATCAAACAATG GAGATACAGCACCATGAAAAACTGGAACGTCAATTGGGAAACCCGCGAAA TGATTGTGACCTGCGAAGGAGAGACCATCATTTTCTCACTCCTTGGTGGA GACATTCGTTTAGTCCATGAATACATTGGTGGCTATATTTTCTTGTCCAT GAGAAAGGACGTGAACGCAGCTCTCGACGTGGAGATGTTTTATAAATTGA CTGGTGGCTGGAATACCATCGGTGGTGGTGAAGGCAAAGATTGGTCCTCC AAACCGGGGTTATAATAGAAAGAACATTATAGAAAGAACATATGATCGAG AGTTTCTTGTggtgaaaagaaaaagagttcAACCAAATCAACAGGCCACG TGATTTGACCATGCTCAGACGTTGTCAATCGACGTATGTTTTGGAAAAGT AGAGTTGTGAAACCTCTGAATGCTTTCTCACCATAACAGAGATGATTTTG GTATGGTTGCagcatttaaaatatttcagcCGTTTTCGATCTGCAACGTC TGAATATGATCAATTCTGGGGCCTTTCGTTGGTTGGTTGGCTGGCTGGCT AGTAGGTTTATTTCTTAAAGGGTGTTGCTACTGTCTCGCCCATAAGAAAG GATTACGAAATAAATAATTAGAGAACTATATACAATGACAATACATGCAA AATGTGAGAAGCATTCTCAATCATTGAAGAAACAGCTAAAATACGGTTCT TTAACTGGTGGACGCTGAaaatgtagatttttttttaaaatgaattttag ttttttcattctttttagatatttttgtaCTTAAGCTTTTTGTTGATGTA ACGTAACTTGTACCCAGGTGTACCAATTAAACTTGTAAGGAAAGTGAGGA AAATACCCTCAAACATTTTCTCTGAATTCATTCACAAGAGCCAAGACTCT ATCTAACAACATTCAGAGAACTTTCAAGCAACCTTTTGTTGTACCTTATT ATTTTAATTTCCGACATATGGTAttgaattttcattattttttgtataTT GTGTTGATTATCCCAAATTTTCGAACCATGCTTGTGAAAATCTGTTAGTT TTATTTAGAAAATTGGTTTATGAGTTTCCTGGCCTGTGACCACCtgatat tttaattctttaccAACTTTCTGCAAATAATCATAACATTTTCTTGTTTT AGGGTCCTTCGAAAAAATAActataaattattatttttagtttGTACCAT CTTAAGTATAATATGTATCCAAgatattttttcatgtttttgttttcttt tttttttgttttcctttatAAATACATATTATAACAACGcaatttttaaa gaacaaaagaagaaattgtcGTCTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000841XLOC_000841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001614-exon-sc0000011-1491911889:915658..915685TCONS_00001614-exon-sc0000011-1491911889:915658..915685Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:915658..915685TCONS_00001614-exon-sc0000011-1510915933:915658..915685Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:915658..915685TCONS_00001614-exon-sc0000011-1575043694:915658..915685Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:915910..916064TCONS_00001614-exon-sc0000011-1491911889:915910..916064Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:915910..916064TCONS_00001614-exon-sc0000011-1510915933:915910..916064Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:915910..916064TCONS_00001614-exon-sc0000011-1575043694:915910..916064Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:919236..919858TCONS_00001614-exon-sc0000011-1491911889:919236..919858Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:919236..919858TCONS_00001614-exon-sc0000011-1510915933:919236..919858Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:919236..919858TCONS_00001614-exon-sc0000011-1575043694:919236..919858Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:920229..920297TCONS_00001614-exon-sc0000011-1491911889:920229..920297Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:920229..920297TCONS_00001614-exon-sc0000011-1510915933:920229..920297Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:920229..920297TCONS_00001614-exon-sc0000011-1575043694:920229..920297Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:920941..921138TCONS_00001614-exon-sc0000011-1491911889:920941..921138Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:920941..921138TCONS_00001614-exon-sc0000011-1510915933:920941..921138Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:920941..921138TCONS_00001614-exon-sc0000011-1575043694:920941..921138Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:921357..921416TCONS_00001614-exon-sc0000011-1491911889:921357..921416Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:921357..921416TCONS_00001614-exon-sc0000011-1510915933:921357..921416Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:921357..921416TCONS_00001614-exon-sc0000011-1575043694:921357..921416Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:921687..921733TCONS_00001614-exon-sc0000011-1491911889:921687..921733Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:921687..921733TCONS_00001614-exon-sc0000011-1510915933:921687..921733Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:921687..921733TCONS_00001614-exon-sc0000011-1575043694:921687..921733Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:922065..922186TCONS_00001614-exon-sc0000011-1491911889:922065..922186Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:922065..922186TCONS_00001614-exon-sc0000011-1510915933:922065..922186Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:922065..922186TCONS_00001614-exon-sc0000011-1575043694:922065..922186Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:922617..922958TCONS_00001614-exon-sc0000011-1491911889:922617..922958Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:922617..922958TCONS_00001614-exon-sc0000011-1510915933:922617..922958Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:922617..922958TCONS_00001614-exon-sc0000011-1575043694:922617..922958Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:923156..923218TCONS_00001614-exon-sc0000011-1491911889:923156..923218Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:923156..923218TCONS_00001614-exon-sc0000011-1510915933:923156..923218Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:923156..923218TCONS_00001614-exon-sc0000011-1575043694:923156..923218Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:923498..923647TCONS_00001614-exon-sc0000011-1491911889:923498..923647Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:923498..923647TCONS_00001614-exon-sc0000011-1510915933:923498..923647Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:923498..923647TCONS_00001614-exon-sc0000011-1575043694:923498..923647Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1491911889:923987..925385TCONS_00001614-exon-sc0000011-1491911889:923987..925385Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1510915933:923987..925385TCONS_00001614-exon-sc0000011-1510915933:923987..925385Clytia hemisphaericaexon
TCONS_00001614-exon-sc0000011-1575043694:923987..925385TCONS_00001614-exon-sc0000011-1575043694:923987..925385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:915658..925385 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03684 1.40198 8.35925 6.13896 62.0413 37.4529 56.3753 68.3211 29.0079 40.7632 24.6175 13.5577 37.0749 25.5493 16.8049 6.84029 22.5581 16.5099 23.355 17.4978 16.8126 23.3057 11.0274 12.0293 22.0081 25.7615 48.4749 55.1769 61.7984 69.8957
Blast
BLAST of TCONS_00001614 vs. Swiss-Prot (Human)
Match: FERM1 (Fermitin family homolog 1 OS=Homo sapiens GN=FERMT1 PE=1 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 5.706e-103
Identity = 202/509 (39.69%), Postives = 291/509 (57.17%), Query Frame = 3
Query:   75 SFTLNVHVTDLNTQKSIEVNL----ESHVGFVMLEIVEKLDVTADYSDHALWWPEKKIWLTKARLSLASYGIINDTQLLFTPQHKSVRLLMPDLQVFDMKVNFAVDVLHTVSELCNELGVRHSEELSFMRP------YEXXXXXXXXXXXXXXXXXXXSDDASSQGSFGNGTLGRSTS--QEP--RTPSSPASNRLNNSYNPNDTLNPYSTAMSPMLAHSPNAPTQDQLELIGLGKSVLERASFNCGWLSSSESLMQQGIKEYDTLYIRYKYFNIFDLNPKIDEVRINQLYSQAKLQILTEEIDCTEEESITFAALQFQVK--VASQNPQGNSGPDEVDDIDSALSELQMTLEGSSQQPSDIPTTHTRPTMSHIPEMFDNLSIIK-KKTFGTSKTNYYFQFKDTHIAYYKTMADAQGPPVQKFNLKGCEVTPEVNINKDKYNIKLTIPGPD-MYEMEMGCSSPQQYVKWMAACRLASKGKTMADPTYEMEMSXSLPTCLQGENNGRSNI 1547
            S+ L V V   N ++  +V L    + HVG VML++VE+++++ D+SD ALWW +K  WL K   +L  YG+  D +LLFTPQHK +RL +P+L++  ++V+F+  V   VS++C  L +R SEELS ++P       +    K  K+       N  S   +S  S   G   ++ +   +P   TP+S      ++S        P +     +LA S    + + L  +   +S++++A  N GWL SS SLM+QGI+E + L +R+KY++ FDLNPK D VRINQLY QA+  IL EEIDCTEEE + FAALQ+ +     S   Q  +G  EVD+I++ALS L++TLEG                ++ IP++ DNL + + KK    +   Y+F FKDT IAY+K     QG P++K NL+GCEV P+VN+   K+ IKL IP  D M EM + C    QY +WMAAC LASKGKTMAD +Y+ E+   L        N  S +
Sbjct:   11 SWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLKLVEQINISQDWSDFALWWEQKHCWLLKTHWTLDKYGVQADAKLLFTPQHKMLRLRLPNLKMVRLRVSFSAVVFKAVSDICKILNIRRSEELSLLKPSGDYFKKKKKKDKNNKEPIIEDILNLESSPTASGSSVSPGLYSKTMTPIYDPINGTPASSTMTWFSDS--------PLTEQNCSILAFSQPPQSPEALADMYQPRSLVDKAKLNAGWLDSSRSLMEQGIQEDEQLLLRFKYYSFFDLNPKYDAVRINQLYEQARWAILLEEIDCTEEEMLIFAALQYHISKLSLSAETQDFAGESEVDEIEAALSNLEVTLEGGK-------ADSLLEDITDIPKLADNLKLFRPKKLLPKAFKQYWFIFKDTSIAYFKNKELEQGEPLEKLNLRGCEVVPDVNVAGRKFGIKLLIPVADGMNEMYLRCDHENQYAQWMAACMLASKGKTMADSSYQPEVLNILSFLRMKNRNSASQV 504          

HSP 2 Score: 183.726 bits (465), Expect = 4.152e-48
Identity = 90/221 (40.72%), Postives = 143/221 (64.71%), Query Frame = 1
Query: 1474 QHTKWRCLXACRLASKGKTMADPTYEMEMSGVRTFLNMQNDVKDSSKXXXXXXXXXXXXMHPEDFVPQRVLSKYKSKQIAARILESHTAFTKLGVIEAKMNFIRQWQALPDYGVSKFNCKFRDSKKKQEIIGIGTKGIVRFDLNSRTVIKQWRYSTMKNWNVNWETREMIVTCEGETII-FSLLGGDIRLVHEYIGGYIFLSMR-KDVNAALDVEMFYKLT 2130
            Q+ +W  + AC LASKGKTMAD +Y+ E+  + +FL M+N     +       +  +  M+PE FV  R   ++KSKQ+AARILE+H    ++ ++EAK+ FI+ WQ+LP++G++ +  +F+ S KK +I+G+    +++ D  +   +  WR++ +K WNVNWETR++++  +      F+ L  D ++VHEYIGGYIFLS R KD N  LD ++F+KLT
Sbjct:  460 QYAQW--MAACMLASKGKTMADSSYQPEVLNILSFLRMKN----RNSASQVASSLENMDMNPECFVSPRCAKRHKSKQLAARILEAHQNVAQMPLVEAKLRFIQAWQSLPEFGLTYYLVRFKGS-KKDDILGVSYNRLIKIDAATGIPVTTWRFTNIKQWNVNWETRQVVIEFDQNVFTAFTCLSADCKIVHEYIGGYIFLSTRSKDQNETLDEDLFHKLT 673          
The following BLAST results are available for this feature:
BLAST of TCONS_00001614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FERM15.706e-10339.69Fermitin family homolog 1 OS=Homo sapiens GN=FERMT... [more]
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