|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001345 ID=TCONS_00001345|Name=TCONS_00001345|organism=Clytia hemisphaerica|type=transcript|length=3176bpRun BLAST on NCBI protein sequence of TCONS_00001345-protein >TCONS_00001345-protein ID=TCONS_00001345-protein|Name=TCONS_00001345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=958bp LLLQEPTAEVIWRHSFFANFDLTKKSTLGFQDTRNLPCSSVGCFVSKKASRun BLAST on NCBI transcript from alignment at sc0000010:499806..508214+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001345 ID=TCONS_00001345|Name=TCONS_00001345|organism=Clytia hemisphaerica|type=transcript|length=8409bp|location=Sequence derived from alignment at sc0000010:499806..508214+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:499806..508214+ >TCONS_00001345 ID=TCONS_00001345|Name=TCONS_00001345|organism=Clytia hemisphaerica|type=CDS|length=8631bp|location=Sequence derived from alignment at sc0000010:499806..508214+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001345 vs. Swiss-Prot (Human)
Match: ZN226 (Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 5.401e-37 Identity = 120/397 (30.23%), Postives = 169/397 (42.57%), Query Frame = 2
Query: 872 VFSQARFVNKKQQQTLVSSEQPRVNCDICQKSLKTKKMLWAHKVAVHFGGN-FPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTHLTEK--------------------KATDGSEEVYHCQACDESFTLKMDLKAHCTAAHPLLGDESVACRTCQKRLKVSHSVYLHGLRHFGARDFKCTLCNQFFKRKAHLLRHSLDRHPEQPRERKKRTVQVDGITCDLCQKSFKYKNALVKHMTTQHGILP----------SQDPSTELGIVVKKGIKRPHKCDVCSKRFKSKNGLAKHK 1969
FSQA + + Q L + E+P CD C KS L +H+ VH G + CE CGK I + L H H+ E+ + C+ CG + R S L H VH EK++ C VC F + S L+ H H+ K +C+ C + H + HTG + + CEICG F + +L H K H EK + E+ Y C+ C + F+ + DLK HC G++ C C K + + ++ H H G + FKC C + F R AHL H ++P CD C K FK+ L H G P SQ S +L V G ++P+KCDVC K F + L H+
Sbjct: 371 AFSQASHL--QDHQRLHTGEKP-FKCDACGKSFSRNSHLQSHQ-RVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRV-HTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIH---TGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKP------------YKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTG-EKPYKCDVCGKVFSRSSQLQSHQ 746 HSP 2 Score: 133.265 bits (334), Expect = 1.150e-31 Identity = 92/311 (29.58%), Postives = 139/311 (44.69%), Query Frame = 2
Query: 896 NKKQQQTLVSSEQPRVNCDICQKSLKTKKMLWAHKVAVHFGGN-FPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTHLTEKKATDGSEEVYHCQACDESFTLKMDLKAHCTAAHPLLGDESVACRTCQKRLKVSHSVYLHGLRHFGARDFKCTLCNQFFKRKAHLLRHSLDRHPEQPRERKKRTVQVDGITCDLCQKSFKYKNALVKH 1825
N + Q + + E+P C+ C KS + H + VH G + CEICGK + L+ H +HS E+ F C+ CG + + S L H +H EK ++C+ C F +++LK HC H+ K C C + + H H+G + F CE CG +F R HL H K H +K Y C C + F ++L H H G++ C C K + S+ LH H G + +KC +C + F R + L H E+P C++C KSF +++ L H
Sbjct: 489 NLQAHQRVHTGEKP-YKCNECGKSFRRNSHYQVH-LVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRI-HTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKP--------YKCDECGKGFKWSLNLDMH-QRVH--TGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKP------------YKCEICGKSFSWRSNLTVH 773 HSP 3 Score: 129.798 bits (325), Expect = 1.393e-30 Identity = 95/353 (26.91%), Postives = 145/353 (41.08%), Query Frame = 2
Query: 938 RVNCDICQKSLKTKKMLWAHKVAVHFGGNFPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTHLTEKKATDGSEEVYHCQACDESFTLKMDLKAHCTAAHPLLGDESVACRTCQKRLKVSHSVYLHGLRHFGARDFKCTLCNQFFKRKAHLLRHSLDRHPEQPRERKKRTVQVDGITCDLCQKSFKYKNALVKHMTTQHGILPSQDPSTELGIVVKKGIK---------RPHKCDVCSKRFKSKNGLAKHK 1969
++ CD C K L H+ + C+ CGK + L H H+ E+ + C+ CG A+ + SHL H R+H EK F+CD C +F S L+ H H+ K +C C +Y H HTG + + CE CG F R L H H EK Y C C + FTL +L+AH H G++ C C K + + +H + H G + +KC +C + F + ++L H E+P C+ C + F + L H G P + G + +K +P+ C+ C K F+ + L H+
Sbjct: 306 KLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRV-HTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKS--------YICTVCGKGFTLSSNLQAH-QRVH--TGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKP------------FKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQ 634 HSP 4 Score: 124.79 bits (312), Expect = 5.089e-29 Identity = 92/330 (27.88%), Postives = 139/330 (42.12%), Query Frame = 2
Query: 1007 VHFGGNFPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTHLTEKKATDGSEEVYHCQACDESFTLKMDLKAHCTAAHPLLGDESVACRTCQKRLKVSHSVYLHGLRHFGARDFKCTLCNQFFKRKAHLLRHSLDRHPEQPRERKKRTVQVDGITCDLCQKSFKYKNALVKHMTTQHGILP----------SQDPSTELGIVVKKGIKRPHKCDVCSKRFKSKNGLAKH 1966
VH G C+ CGK+ GA L+ H H E+ + C+ CG + R S L H +VH EK + C+ C F S L+DH H+ K +C C + H HTG + + CE CG F +L H + H EK Y C+ C + F+ L+AH H G++S C C K +S ++ H H G + +KC C + F+R +H H + E+P C++C K F + L H P +Q ++ ++ G ++P+KC+ C K F + L H
Sbjct: 301 VHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDH-QRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKP--------YKCEECGKGFSRPSSLQAH-QGVH--TGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKP------------YKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTG-EKPYKCEECGKGFSRRADLKIH 605 HSP 5 Score: 94.7449 bits (234), Expect = 1.261e-19 Identity = 72/261 (27.59%), Postives = 117/261 (44.83%), Query Frame = 2
Query: 875 FSQARFVNKKQQQTLVSSEQPRVNCDICQKSLKTKKMLWAHKVAVHFGGN-FPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTHLTEKKATDGSEEVYHCQACDESFTLKMDLKAHCTAAHPLLGDESVACRTCQKRLKVSHSVYLHGLRHFGARDFK 1654
FSQ+ ++ Q+ + E+P C+ C + L H++ +H G + CE CGK A+L+ H H+ E+ + C+ CG +++ S+L H RVH EK F+C+ C +F + L+ H H+ K +C C + L + H HTG + + C CG F + L H H EK Y C C + F+ L++H H G++ C C K ++ +H H G + +K
Sbjct: 540 FSQSSYLQIHQKAHSI--EKP-FKCEECGQGFNQSSRLQIHQL-IHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAH-QKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKP--------YKCDVCGKVFSRSSQLQSH-QRVH--TGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYK 784 HSP 6 Score: 87.8113 bits (216), Expect = 1.696e-17 Identity = 60/186 (32.26%), Postives = 90/186 (48.39%), Query Frame = 2
Query: 923 SSEQPRVNCDICQKSLKTKKMLWAHKVAVHFGGN-FPCEICGKKCITGAELRRHMTSHSTERRFVCQYCGLAYKRWSHLYQHLRVHEEEKNFRCDVCHLNFKVQSELKDHCFAEHSDGKMVQCSVCKHKLQTPLAVYHHSMKHTGTRDFICEICGSNFKRKQHLVTHMKTHLTEK--KATDGSEEV 1471
+ E+P NC+ C K + L AH+ VH G F CE CGK A L+ H H+ ++ + C CG +K +L H RVH EK ++C C F S L+ H + H+ K +C VC + H HTG + + CEICG +F + +L H + H+ +K K+ G + +
Sbjct: 610 TGEKP-YNCEECGKVFRQASNLLAHQ-RVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLH-QSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNI 792 The following BLAST results are available for this feature:
BLAST of TCONS_00001345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.