XLOC_000726 (gene) - C. hemisphaerica

Overview
NameXLOC_000726
Unique NameXLOC_000726
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000010:499806..508214+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000726 ID=XLOC_000726|Name=XLOC_000726|organism=Clytia hemisphaerica|type=gene|length=8409bp|location=Sequence derived from alignment at sc0000010:499806..508214+ (Clytia hemisphaerica)
ACTCTTGTTACAAGAGCCGACCGCAGAAGTCATTTGGCGCCATTCTTTTT
TCGCTAATTTTGATTTGACAAAGAAATCTACCCTGGGTTTTCAAGATACT
CGCAACCTGCCTTGTTCAAGTGTTGGGTGTTTCGTGTCAAAAAAAGCTTC
GAAAATGGCGAACATTGAAGAGGCTGAAATCACCTTTCAACAACAAGAAC
CTGCACAGAATGAACCCCCTGCAGATTTATCCAGCTTTCAATTTGTTCCT
GAAAAAATTGTGGATTTTTCCATTCTACAGGTAAGCATTAAACTCTTGAt
tgtttgtctttttttcttgttGTTCTTTTCGACTTTCAAATCTGGTGTGT
GGCCATGGACCTATAAAGAGCGGTCAAATTATCTTTATTTCTGCTCATTC
TAAAATGCTCAAAACTTTTTGTGTATGTGTGGTCATCTCTCTCATCCTTT
NGCTTTTCGACTTTCAGATCTGGTGTGTGGCCATGGACCTATAAAGAGCG
GTCAAATTATCTTTATTTCTCCTCATTCTAAAATGCTCAAAACTTTTTGT
GTATGTGTGGTCATCTCTCTCATCCTTTTCTAGTACATTGATTTGTTTGC
TGGACTTgaaatttaatgtttctatTATTAGGTTTAGAAGAGATTTGAGA
tttcttctcatttttaaaAGCTTTCTCAATGGATCTATAACTCTTATATC
TTAACTTCATTTTTTACAACATTTTATACCTAACTCAAGTTATCCTACCT
GAAGTTCTTGCACATATAGCTATTTTCTCCTACAGGCTACGATCTCTCTT
TCAATACCACCTTAAGttggtaccgtgagattgggtaaattgcatcagtg
gaggctggTTAACATGCATAGAcgtcaaatgaaagacctgactggtcatt
aaaatacaacctACAGTAGCAGCTCCGCTCCGCTCGCATctttactctac
catttttgttttgatttaactttgtattacGCTCCTTTGTTTGTTtagcc
actaatttggtctctTCGTTCAAGACATATTCGCTTGTGTTCCACtaagg
attttttttcatatttcgatttgtAATATTCGGTTTGAAAGTGAaatctt
gtattttttaatacgccgttcatcaTATCAAATGACTATGgaagttcggt
gaaatggtggtcgaattgctgtcccatgttttgtcagatagtccctagtt
agagcagttgatggtaataAACAAAAGATGAATGGATGGGTGTTAcaaca
gtcactttcggtcggggtagAGGATGGCAacatttgtcgttctttatgaa
atttgtcgttcttgtctatttttagtaaatgcaATGATTTTTTAAACCCG
AATCGTGCAAAATTCTGCTTTCAtatatgaaaaatcaaatttgataaaaa
attagtcaaaatgaggaaaaaataccccaaaaaattGTTATTGGAATTGG
AAGTATTTTATTatggaattttcgaaattttggcaAACTTATTCGGTATT
TTAGAAATTGCAAACCCTGTACGCCCCTATCTTAGAAGGGATTAAAAGAC
AAAAGAGAATGTCTACagacatttttggacctaccccggtggggtggagg
tcctataaattaacccgtgttcgttagttagttagttagttaccaacttt
tctcgagattggctcattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Natttttctttcaccgttaaacatcgatgcgtttcttaattgctttctcc
gttccaatagatatataaatctaaatttaaaattatacattacttccatt
aaattctaattattcgttttataaataggtaggtccattaaagtattact
tgttaatttcacttttattatggaattttcgaaattttggcaAACTTATT
CGGTATTTTAGAAATTGCAAACCCTGTACGCCCCTGTCTTAGAAGGGATT
AAAAGACAAAAGAGAATGTCTACAGACATTTTTAATTTCACGTGAAATTG
CCAAACACAAATATTTCTcaggattaaaaaaaatcacctcTAAAAATGGT
CTCATTAGGGCAAAACAGgctatttttgtaaacaaaacattCTCTCAACC
TGGAAATTAAACTTCCAAATTTTGAGCTGTTAAACtgcaaaaaatttctt
cccttaagttaATGCGTACCATAAGTTGGtataatgtcaacatccctctt
ctaatttcaacacccttctttagagatataAGGAATATTAAGAAGGTCGG
GATCTCTAATAGACAAAAGTTTTTGTCCACTCTGATTGCcaaggaaagaa
aaatagtttccatcagcgattctgaccttcctattattcctatctcaaag
aagggtgtcaaaattagaagagggatgtcaacattaggcCAACTTACGAC
AAAacatttcacttttttcaaattgcGGGTGAATAAGCTTTGACCattga
ttttggtcaattttaggGTGCTGATTTGGAATTTAAGCTTGAAAACCTGC
AGTTTTTgcataatttgatttttttttctaaataaaattgtaagctacct
taaaggaagaaattttggcggaaagaaaattagGCGGATTTGGcaagaat
ccgccaaattaagttcccgccaaaatttcttttttcccccatccgccaaa
ttaaattcccgccaaatagCGCTCCGCGCAAcccatacgtcataattatt
acttttcactttttttgacatttgtacgagttgcaatcccacaattcaac
gtggctcaattaaagatacatgcaagctgttatatatcttttgtcaaacg
atgcaattaacgtgcaaaagagattagcgcaaaggttgatgggattggaa
ctcgtacaaacacatcgagagtaatgattatgtcaaaaataaaatctatt
tttagattcagcgcggtgcgctattaaattttttgaaaatatgctcTTTT
AAGgagtttttgcatttttttgtagCTGTTTTTACGTCAgtttaagaata
aatttttcagcaaacgtcaaattaaattcccgccaaatttagttttttcg
tccatccgccaaattaaattccctctaaaaaactttttcggccatcagcc
aaattaaattcccgccaaaatttcttcctttaaggtaaaattcataattt
tcagggtgttcttcaaaatcaaaaaagacctataccacgaGATAGAGCTC
Ttccaaactgagcaaaaaatgtattatatcaaagtctcaacttttctaga
tcaaaagttatgggtgtttttgtggtaaaaaaagtgctataattttgcat
aGATTATGCAGATTACAGGGTAATTCCCTGTTTTCGATCAATTTTTGACc
acaacattttttttctctcatgAGAAGAAACTTTGGCTTGAATGTTGtgg
aaaaattgaattaaatttaCTGGTGACTTAGTCCGCCAATCTCGCCTAAG
GTTCATTAAAATTAATTTGTATTTTTGCATTTTGCCAAAATAAGGCAAAA
CAGGACAAATTTAACCAATATTAAACTGCTTGCTGAAATTAGTTCTTGCC
AAATAAGTTGCCTTAATGTAGAAGGAATCTGcatgccaaatatctcaaac
catctgatcatccctttaattattattattattagcatggtgtctacggg
accttgaaaaccttgaaattggactaagcaaccttgaaaaccttaaaaat
gcATGATTGTGACTGTATAGTTGTCTTGTTTTGGCTTGGGTCCTGAATAA
AGTTTTGGTCTATGCTAAACTCTAGGAATTTTCTtgttcgcttcgctcgc
aatcaTTGTTTCCAAACCAACTACTGGTAGTAACATCTCTTGCACCTTGT
CAACAAGTCATATCCTACTTAAGTCGATTTGAGTTCTGAGAAACCTTGAA
AATAACCaataaatggtccaaaaaaccttgaaaattttgccaaaaaagct
ttgaaaatcTTGGAAATGGTGACAAAAATTCTGTAGTCACCCTGATTAGT
GacttaagaatattttgaatttggcATCAATAACTTATTTGTATGAATTT
TCCCTGAAAAGAGAGTTCTAAGAAATAGAAATATCTGGGCAGatttgaaa
aagttaaatttggTAAATgacccaataattttttaaatttgggaaaaaat
aaatttccagGGAACTTTTAGCTGAAAATTTGAacttaaaaaaatgaatt
tttcaagtcagtcttaatttttcatcccaCATAGTTTGAGttttattttt
gctaaaaagcccAAAAATGGTTAGTAGAAGCTCAAATTTAAATCTTGCAT
AAATTAATTCAAGTAAAGATCGTACAATCTCGGATCATTTGTCTCATTTG
TTTGACCAAGTCTCTACcactctaccactgcactatggttggtatatttt
ttacaattgtttttaattttttaacaaaactaTTACTCTTTCTGTTTTAG
GATGGCCAACGTTCTTATTGTGTCCGTTGGAAGGATTCCTGGCTGACTGA
AGAGCTTCTCTCCCTAACCTACCAACACCTTATCAACGAGTTCTGGTCAA
CCGCAGCTGCCAATGTCAACAAAGAGCAGACagaaaaagtgaagaaatcG
AAAGCAACcaacataaaaatcataaataagcAGGATAACTATGAAGCTGT
GTCTGTCCAGCCGCAATATCAGACAACATCCATAACAGTAACTTCACCGG
GAAGTGCAACCCAACAGCTGGTTGATAATGAAGCTAATCTTAAAGAAATG
ACTGAAACTACTGCAGCAGCTCAACTTATAGACCACTCTGGTATCCTAAA
ACAACAAGTAATACCAAAGATTCCTGATCAAACTGGTATCAATGCCAATA
CATTAAGCTCGATGGTTGTTACTAGTGATGTCACCTTAGCTGCTTATCCA
AACGAAGCCAACCCTCCAACCATGATTCCACAGCAACCAACCATACCAAA
ATACCAACAGGCTCTTCAACAGTCGATCTCGATCCAACAACAACAATTAA
ACCCCGATTCTGAAACAGGAAAAGTCACGTTTCCAAAACACGTTTTCTCT
CAAGCTCGATTTGTTAATAAAAAGCAACAGCAAACTCTTGTGTCTTCCGA
ACAGCCACGAGTCAACTGTGATATTTGTCAGAAATCCTTGAAAACCAAGA
AAATGTTGTGGGCACATAAAGTTGCTGTTCATTTCGGTGGTAATTTTCCC
TGTGAGATTTGTGGCAAGAAATGTATAACTGGTGCTGAGTTGAGACGTCA
CATGACATCCCATTCGACCGAGCGTCGTTTCGTTTGCCAGTATTGTGGAT
TAGCCTATAAACGATGGTCACACTTGTATCAGCATTTGCGTGTTCACgaa
gaagagaaaaatttccGTTGTGATGTTTgtcatttgaatttcaaagtTCA
GTCTGAATTGAAGGATCATTGTTTTGCTGAGCACTCGGACGGTAAAATGG
TCCAGTGTAGTGTATGTAAACATAAGCTACAAACACCTCTTGCCGTTTAT
CATCATAGTATGAAACACACAGGTACTCGTGACTTCATTTGCGAGATTTG
TGGCTCGAATTTCAAACGAAAACAACATCTGGTTACTCACATGAAAACAC
ATTTGACGGAAAAGAAAGCAACCGATGGTAGTGAAGAAGTGTATCATTGT
CAAGCTTGCGATGAAAGTTTCACGTTAAAAATGGATCTGAAAGCACATTG
CACAGCCGCACATCCTTTGCTGGGAGACGAGAGCGTAGCTTGTAGAACAT
GTCAAAAGAGACTGAAAGTATCACATTCAGTTTATCTACACGGCTTACGT
CATTTTGGTGCACGTGACTTCAAATGTACGTTATGTAACCAGTTCTTTAA
AAGGAAAGCCCATTTATTACGTCATTCATTAGATCGTCATCCAGAACAAC
CGAGAGAACGAAAAAAACGAACAGTCCAAGTCGATGGAATCACATGCGAT
CTTTGCCAGAAATCTTTCAAGTACAAGAACGCACTCGTCAAACACATGAC
AACCNCATGCGATCTTTGCCAGAAATCTTTCAAGTACAAGAACGCACTCG
TCAAACACATGACAACCCAACACGGAATATTACCATCTCAAGACCCAAGT
ACTGAACTTGGCATTGTCGTCAAAAAAGGAATCAAACGTCCTCACAAATG
TGACGTATGTAGCAAACGTTTCAAATCCAAAAATGGTCTCGCTAAGCATA
AGGTTAATAAACATTCGTTGGAAAGTGAAAACAGTATTGTGATTCTTGGT
GAAGACGGCTCAAAGGATTTGGAGGAGAAAGGAAACGTTCGCGAAGAAGA
TGAAGTCGACGATGACGATGACGAAGATATCGAAACAGATTCTGAAACTG
AAACGCCTCAGATACTGCAAAACCAAGCTATTGCTGAACCACAATTACTT
CAAAACCAATCAGTCGAATTATCTTCATCTTCTCGGCAAAAAAGTGAACC
CATGGAAGTTGACCAACAACAACCAGAGATGGTGGACCATGACGACAATG
TGTTACATGAGTTGGATGTTACGACAAACAGCGATGATAAGGATGCTACC
AATAATTTCCGTGTAGTTCCTATTGAGCATTTCAATACTTCAACTGGAGC
AGGGACTTCCAATGTGGGCTCATCAGCTGATAACGTACCACACCAAGTAA
TCACTGTAGACGAAGCTACCGGTCAAATCATCCTGATGACAACAAATGCA
CCACCATCCAACCAACAAGATGTGAAAGACAACAAAACCGGACCGTCGGA
TGTGGGTACAAACCAGATTATACCTGTCGATGATGCATCCAGAGCCTCAC
CGATCATCACAGTACGAGAATCCGATCAATCAACGAGTGCAGCATTCGAA
GGTCAGGCGGTCGATCCTTCTCAAATCCGGGCACTCACATCGGCAGCCCA
ACAACAGCAATTAACTACCGGACAGCTCCAACAAGTACAAATCGGACAGA
TTTTGAATCAGGATGGAGTCACGCTTGCGTCAGTACCAATCCAATCCGTA
CAAGGAGTAGGTGATGGTCAGAATATAATCAATTTTTCACAAGGAAGTAA
TGAACAAATTGTTGTTTTACTATCCGCTCTGAACTCTGAGAACATTCAAC
AAATTCAAtaacatttcaatttcatcataatCGTTTAAGACAAAAGGTTT
TtctagtttttattttattttttgaatacgTATGTTTTAGATATCGATTT
CAAACTGAGTTCATTTTCTGccattttttaatattgaatgattttttttt
ctagcCTATAATATGTGCTCGGAAAAAAAGCGGTACTGATCTGAAAAAAG
TAAATTCATCAAATTAGTCCGTTGTTCAATTTCCAATTTCGAAGTATATC
AAGAATAAGTGAACACCTTTCGTTTATTaaatagatttaaaaattgCGAT
CAATCTTCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001345TCONS_00001345Clytia hemisphaericatranscript
TCONS_00001346TCONS_00001346Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001345-proteinTCONS_00001345-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:499806..508214 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.9	43.53	23.31	20.78	80.84	62.77	48.79	49.41	21.27	27.28	24.29	19.24	18.59	24.1	19.57	28.66	25.97	27.87	11.05	9.77	20.27	19.62	38.03	35.38	35.1	33.62	9.3	9.47	29.51	30.84