TCONS_00001310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001310
Unique NameTCONS_00001310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001310 ID=TCONS_00001310|Name=TCONS_00001310|organism=Clytia hemisphaerica|type=transcript|length=1548bp
GAACGTTAAAACATTTaggatgttttttcatttttatgcgTTAATCAAAG
GCTAGTTTCTACTTGCGAACTGATACAAGGATTGAAAGTAGATAaagcta
aaaagaaaacttaCCGATGAAATGAATAGAATGTCCTTTGGGTGTCAAGA
TTTCATCgaattgtttttgaataagaatTCTCATGCGTTCTGCCATTCGT
CCATCACGAACTGATGACATGATACAAACGATTTTCAGCGAAGTCATCTT
CTTGTTGTAAAGAGTTGTTTATTCGAGCTTCAAAGTTGCTTTTTTTGACT
CACTTTGCTGTTTGAAACAGGTTGTGTTTGACTTTCTTGCTTAAATGAAC
GCCTTTTATACTTGCGTCGTAATCACTCCAAAAGGATGATAATAATAGGC
AATCAAACAAAATATCAGTTCATTATTACTCCCTTAAGCGTACATATTTG
TATCCACAAGGGAGTAACTATGAattgatattttgttttttgtttatgaT
GCTATCATAATCACCCTTTTGGATAGTTACGCAAGTATAAAAAGCCGTTC
ATTTTAGAAAGAAGTCAAACAGAGCTCATTTCAAACAGAAGTGTAAGTCA
AAAAGAACTTCGAATAAACACTGTNCCGTTCATTTTAGAAAGAAGTTAAA
CAGAGCTCATTTCAAACAGAAGTGTAAGTAAAAAAGAACTTCGAATAAAC
ACTGTACACCAAAAGATAAAAGATGACTTCGTTGAAAATCGTTTGTATCA
TGTCATCAGTTCGTGATGGACGAATGGCAGAACGAATGAGAattcttatt
caaaaacaattcGATGAAATCTTGACACCCAAAGGACATTCTATTCATTT
CATCGATCCTGAGGAATACGATTTTCCAGTCTTGAAGACACCTCTTCATT
TCTACCCTGATCAATCGGAAGCACcagaaaaattacgaaaattgaACGAC
ATTGTCATCGCGGCCGATGCATACATCATTCTCACTGCTGAATACAATCG
AAGCATGCCACCTGCTTTAACCAACTTAATGAACCACTTACCTCCTCCAA
GCTTCGAATTCAAACCTAGTGGTATGGTAGGTTATTCGCAAGGAAACCTT
GGAGGAGCGATGGCAATGGCAGCTGCACGACCCTTCTTATCAGAAATGGG
ATGTTTGCCAGTCAAACATTTTGTCGTCATTCCTTACGTTCAAAATGAAG
TGAAGGAAGATGGCAGCACAGACAACACTCATATTCACAGCAGTCTCAAG
AAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTGCCAAAACTCAACG
AACTTCTGGAACACCCAATTAGATGTTATTTTCAAATGTATTGTTAATCT
TCTTACCATGTTTGTAAATATTAGAATGCATTATATattatggaaaaaaa
tataattttacagTTATGATAACATTGAAGTATTGCAAATTGTACCCCGC
TATCTTAATCTGCCAAAAACGGCTCTAAAATTATAGTCCATGATACAAAA
TCCTCCGTCAGTAAACGATCAGTTTAGAAATGGCTGGGTTGATAGANG
Run BLAST on NCBI

protein sequence of TCONS_00001310-protein

>TCONS_00001310-protein ID=TCONS_00001310-protein|Name=TCONS_00001310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MTSLKIVCIMSSVRDGRMAERMRILIQKQFDEILTPKGHSIHFIDPEEYD
FPVLKTPLHFYPDQSEAPEKLRKLNDIVIAADAYIILTAEYNRSMPPALT
NLMNHLPPPSFEFKPSGMVGYSQGNLGGAMAMAAARPFLSEMGCLPVKHF
VVIPYVQNEVKEDGSTDNTHIHSSLKKLFTQVEWWAQAAKTQRTSGTPN
Run BLAST on NCBI

transcript from alignment at sc0000010:39342..41843+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001310 ID=TCONS_00001310|Name=TCONS_00001310|organism=Clytia hemisphaerica|type=transcript|length=2502bp|location=Sequence derived from alignment at sc0000010:39342..41843+ (Clytia hemisphaerica)
GAACGTTAAAACATTTaggatgttttttcatttttatgcgTTAATCAAAG GCTAGTTTCTACTTGCGAACTGATACAAGGATTGAAAGTAGATAaagcta aaaagaaaacttaCCGATGAAATGAATAGAATGTCCTTTGGGTGTCAAGA TTTCATCgaattgtttttgaataagaatTCTCATGCGTTCTGCCATTCGT CCATCACGAACTGATGACATGATACAAACGATTTTCAGCGAAGTCATCTT CTTGTTGTAAAGAGTTGTTTATTCGAGCTTCAAAGTTGCTTTTTTTGACT CACTTTGCTGTTTGAAACAGGTTGTGTTTGACTTTCTTGCTTAAATGAAC GCCTTTTATACTTGCGTCGTAATCACTCCAAAAGGATGATAATAATAGGC AATCAAACAAAATATCAGTTCATTATTACTCCCTTAAGCGTACATATTTG TATCCACAAGGGAGTAACTATGAattgatattttgttttttgtttatgaT GCTATCATAATCACCCTTTTGGATAGTTACGCAAGTATAAAAAGCCGTTC ATTTTAGAAAGAAGTCAAACAGAGCTCATTTCAAACAGAAGTGTAAGTCA AAAAGAACTTCGAATAAACACTGTNCCGTTCATTTTAGAAAGAAGTTAAA CAGAGCTCATTTCAAACAGAAGTGTAAGTAAAAAAGAACTTCGAATAAAC ACTGTACACCAAAAGATAAAAGATGACTTCGTTGAAAATCGTTTGTATCA TGTCATCAGTTCGTGATGGACGAATGGCAGAACGAATGAGAattcttatt caaaaacaattcGATGAAATCTTGACACCCAAAGGACATTCTATTCATTT CATCGGTAAGTTCATGTTTTATCAACTTTTAATATCCCTGTATCAGTTCT AAAGTGGAAACTTGCTTTGATTATAGCAGGTTGAAGATACCCTCAAAGAA GGCTGACCAGAGTCATTCAGATATATTTTGTAAAACTGAATCAATTAAAA TGCTCGAGGTTCTTCGACGGTTGCTAACTATTTTGTACCCCTTGTTGTCA GAAAATTTTCTTATCAAATAGATTTCAGATTTTGAATAAGATTTCTTTTC CTTTCTTAGATCCTGAGGAATACGATTTTCCAGTCTTGAAGACACCTCTT CATTTCTACCCTGATCAATCGGAAGCACcagaaaaattacgaaaattgaA CGACATTGTCATCGCGGCCGATGCATACATCATTCTCACTGCTGAATACA ATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAACCACTTACCTCCT CCAAGGCAAGTCGTTTTGTTTGTCTCTGTTCTCAATAGAGAAGGGAAAAG GGGCACACAAACTCAGTTTTAACTTTCCCAACCCTGAATTTCGAATCCTG CCAAATTACTCTTAGCTCTCGACCTCTTAAAGAAAAATACTGATATTGAG AAACATTATTATAATAGATTAAAAATTCCCATTGATTAAAGGCAAAGAAT CTCAAtaattctattggttgaaaaCAATGCCTGCACTGATTTAAAGCCAA ATGTTAGCAATTTAATTTCATTATCGCCAGTTGAAAACAATTCTTATCGA GAGACTGAAACTGGGTGTTTATCTAATGGCCATTTCATTTTCACCTTTTT AGCTTCGAATTCAAACCTAGTGGTATGGTAGGTTATTCGCAAGGAAACCT TGGAGGAGCGATGGCAATGGCAGCTGCACGACCCTTCTTATCAGAAATGG GATGTTTGCCAGTCAAACATTTTGTCGTCATTCCTTACGTAAGTTAAAAT TGAAATCGTTATGGATTGTGGACATTGCAATTAGCAAAAAACTTATCAAT ATGATTTTGGCAATACTCACTCGTCGTTATGCTTAGCGCTTTTTGGTtct tatgataaaatatttcttcGGTGAATTTCCAATTTTATGATATTTGGTCT CTACACTGCCCCCTGGAACACTATCCCTGAATTTCGTCTGATAATTTTAT TACATCCAGttcttttaagaatttttttataagaaagctttaatttgcaa aattgaaaaaatctgtTAACCAAAGGCTAAAGAGTCTTCATAACTCAAAC TTCTTTAAAGTGTGCTTCACCTAAGGTTTCTTACTCTTTAGGTTCAAAAT GAAGTGAAGGAAGATGGCAGCACAGACAACACTCATATTCACAGCAGTCT CAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTGCCAAAACTC AACGAACTTCTGGAACACCCAATTAGATGTTATTTTCAAATGTATTGTTA ATCTTCTTACCATGTTTGTAAATATTAGAATGCATTATATattatggaaa aaaatataattttacagTTATGATAACATTGAAGTATTGCAAATTGTACC CCGCTATCTTAATCTGCCAAAAACGGCTCTAAAATTATAGTCCATGATAC AAAATCCTCCGTCAGTAAACGATCAGTTTAGAAATGGCTGGGTTGATAGA NG

Coding sequence (CDS) from alignment at sc0000010:39342..41843+

>TCONS_00001310 ID=TCONS_00001310|Name=TCONS_00001310|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000010:39342..41843+ (Clytia hemisphaerica)
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000714XLOC_000714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001310-exon-sc0000010-1491911889:39342..40196TCONS_00001310-exon-sc0000010-1491911889:39342..40196Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1510915933:39342..40196TCONS_00001310-exon-sc0000010-1510915933:39342..40196Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1575043694:39342..40196TCONS_00001310-exon-sc0000010-1575043694:39342..40196Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1491911889:40451..40646TCONS_00001310-exon-sc0000010-1491911889:40451..40646Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1510915933:40451..40646TCONS_00001310-exon-sc0000010-1510915933:40451..40646Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1575043694:40451..40646TCONS_00001310-exon-sc0000010-1575043694:40451..40646Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1491911889:40994..41129TCONS_00001310-exon-sc0000010-1491911889:40994..41129Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1510915933:40994..41129TCONS_00001310-exon-sc0000010-1510915933:40994..41129Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1575043694:40994..41129TCONS_00001310-exon-sc0000010-1575043694:40994..41129Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1491911889:41483..41843TCONS_00001310-exon-sc0000010-1491911889:41483..41843Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1510915933:41483..41843TCONS_00001310-exon-sc0000010-1510915933:41483..41843Clytia hemisphaericaexon
TCONS_00001310-exon-sc0000010-1575043694:41483..41843TCONS_00001310-exon-sc0000010-1575043694:41483..41843Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001310-proteinTCONS_00001310-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:39342..41843 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1474.46 1477.98 1631.91 1685.9 6.12058 3.499 0.461426 0.895942 0.268893 1.65756 0.563718 0.141168 0.0704858 0.0915003 0 0.0161457 0 0.0407737 0 0 1.60708 0.244885 451.482 352.836 0.0568945 0.0634992 18.5883 28.0543 173.644 196.998
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029039Flavoprotein-like_dom
IPR005025FMN_Rdtase-like
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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