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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001310 ID=TCONS_00001310|Name=TCONS_00001310|organism=Clytia hemisphaerica|type=transcript|length=1548bp
GAACGTTAAAACATTTaggatgttttttcatttttatgcgTTAATCAAAG
GCTAGTTTCTACTTGCGAACTGATACAAGGATTGAAAGTAGATAaagcta
aaaagaaaacttaCCGATGAAATGAATAGAATGTCCTTTGGGTGTCAAGA
TTTCATCgaattgtttttgaataagaatTCTCATGCGTTCTGCCATTCGT
CCATCACGAACTGATGACATGATACAAACGATTTTCAGCGAAGTCATCTT
CTTGTTGTAAAGAGTTGTTTATTCGAGCTTCAAAGTTGCTTTTTTTGACT
CACTTTGCTGTTTGAAACAGGTTGTGTTTGACTTTCTTGCTTAAATGAAC
GCCTTTTATACTTGCGTCGTAATCACTCCAAAAGGATGATAATAATAGGC
AATCAAACAAAATATCAGTTCATTATTACTCCCTTAAGCGTACATATTTG
TATCCACAAGGGAGTAACTATGAattgatattttgttttttgtttatgaT
GCTATCATAATCACCCTTTTGGATAGTTACGCAAGTATAAAAAGCCGTTC
ATTTTAGAAAGAAGTCAAACAGAGCTCATTTCAAACAGAAGTGTAAGTCA
AAAAGAACTTCGAATAAACACTGTNCCGTTCATTTTAGAAAGAAGTTAAA
CAGAGCTCATTTCAAACAGAAGTGTAAGTAAAAAAGAACTTCGAATAAAC
ACTGTACACCAAAAGATAAAAGATGACTTCGTTGAAAATCGTTTGTATCA
TGTCATCAGTTCGTGATGGACGAATGGCAGAACGAATGAGAattcttatt
caaaaacaattcGATGAAATCTTGACACCCAAAGGACATTCTATTCATTT
CATCGATCCTGAGGAATACGATTTTCCAGTCTTGAAGACACCTCTTCATT
TCTACCCTGATCAATCGGAAGCACcagaaaaattacgaaaattgaACGAC
ATTGTCATCGCGGCCGATGCATACATCATTCTCACTGCTGAATACAATCG
AAGCATGCCACCTGCTTTAACCAACTTAATGAACCACTTACCTCCTCCAA
GCTTCGAATTCAAACCTAGTGGTATGGTAGGTTATTCGCAAGGAAACCTT
GGAGGAGCGATGGCAATGGCAGCTGCACGACCCTTCTTATCAGAAATGGG
ATGTTTGCCAGTCAAACATTTTGTCGTCATTCCTTACGTTCAAAATGAAG
TGAAGGAAGATGGCAGCACAGACAACACTCATATTCACAGCAGTCTCAAG
AAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTGCCAAAACTCAACG
AACTTCTGGAACACCCAATTAGATGTTATTTTCAAATGTATTGTTAATCT
TCTTACCATGTTTGTAAATATTAGAATGCATTATATattatggaaaaaaa
tataattttacagTTATGATAACATTGAAGTATTGCAAATTGTACCCCGC
TATCTTAATCTGCCAAAAACGGCTCTAAAATTATAGTCCATGATACAAAA
TCCTCCGTCAGTAAACGATCAGTTTAGAAATGGCTGGGTTGATAGANG Run BLAST on NCBI protein sequence of TCONS_00001310-protein >TCONS_00001310-protein ID=TCONS_00001310-protein|Name=TCONS_00001310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MTSLKIVCIMSSVRDGRMAERMRILIQKQFDEILTPKGHSIHFIDPEEYD
FPVLKTPLHFYPDQSEAPEKLRKLNDIVIAADAYIILTAEYNRSMPPALT
NLMNHLPPPSFEFKPSGMVGYSQGNLGGAMAMAAARPFLSEMGCLPVKHF
VVIPYVQNEVKEDGSTDNTHIHSSLKKLFTQVEWWAQAAKTQRTSGTPN Run BLAST on NCBI transcript from alignment at sc0000010:39342..41843+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001310 ID=TCONS_00001310|Name=TCONS_00001310|organism=Clytia hemisphaerica|type=transcript|length=2502bp|location=Sequence derived from alignment at sc0000010:39342..41843+ (Clytia hemisphaerica)
GAACGTTAAAACATTTaggatgttttttcatttttatgcgTTAATCAAAG
GCTAGTTTCTACTTGCGAACTGATACAAGGATTGAAAGTAGATAaagcta
aaaagaaaacttaCCGATGAAATGAATAGAATGTCCTTTGGGTGTCAAGA
TTTCATCgaattgtttttgaataagaatTCTCATGCGTTCTGCCATTCGT
CCATCACGAACTGATGACATGATACAAACGATTTTCAGCGAAGTCATCTT
CTTGTTGTAAAGAGTTGTTTATTCGAGCTTCAAAGTTGCTTTTTTTGACT
CACTTTGCTGTTTGAAACAGGTTGTGTTTGACTTTCTTGCTTAAATGAAC
GCCTTTTATACTTGCGTCGTAATCACTCCAAAAGGATGATAATAATAGGC
AATCAAACAAAATATCAGTTCATTATTACTCCCTTAAGCGTACATATTTG
TATCCACAAGGGAGTAACTATGAattgatattttgttttttgtttatgaT
GCTATCATAATCACCCTTTTGGATAGTTACGCAAGTATAAAAAGCCGTTC
ATTTTAGAAAGAAGTCAAACAGAGCTCATTTCAAACAGAAGTGTAAGTCA
AAAAGAACTTCGAATAAACACTGTNCCGTTCATTTTAGAAAGAAGTTAAA
CAGAGCTCATTTCAAACAGAAGTGTAAGTAAAAAAGAACTTCGAATAAAC
ACTGTACACCAAAAGATAAAAGATGACTTCGTTGAAAATCGTTTGTATCA
TGTCATCAGTTCGTGATGGACGAATGGCAGAACGAATGAGAattcttatt
caaaaacaattcGATGAAATCTTGACACCCAAAGGACATTCTATTCATTT
CATCGGTAAGTTCATGTTTTATCAACTTTTAATATCCCTGTATCAGTTCT
AAAGTGGAAACTTGCTTTGATTATAGCAGGTTGAAGATACCCTCAAAGAA
GGCTGACCAGAGTCATTCAGATATATTTTGTAAAACTGAATCAATTAAAA
TGCTCGAGGTTCTTCGACGGTTGCTAACTATTTTGTACCCCTTGTTGTCA
GAAAATTTTCTTATCAAATAGATTTCAGATTTTGAATAAGATTTCTTTTC
CTTTCTTAGATCCTGAGGAATACGATTTTCCAGTCTTGAAGACACCTCTT
CATTTCTACCCTGATCAATCGGAAGCACcagaaaaattacgaaaattgaA
CGACATTGTCATCGCGGCCGATGCATACATCATTCTCACTGCTGAATACA
ATCGAAGCATGCCACCTGCTTTAACCAACTTAATGAACCACTTACCTCCT
CCAAGGCAAGTCGTTTTGTTTGTCTCTGTTCTCAATAGAGAAGGGAAAAG
GGGCACACAAACTCAGTTTTAACTTTCCCAACCCTGAATTTCGAATCCTG
CCAAATTACTCTTAGCTCTCGACCTCTTAAAGAAAAATACTGATATTGAG
AAACATTATTATAATAGATTAAAAATTCCCATTGATTAAAGGCAAAGAAT
CTCAAtaattctattggttgaaaaCAATGCCTGCACTGATTTAAAGCCAA
ATGTTAGCAATTTAATTTCATTATCGCCAGTTGAAAACAATTCTTATCGA
GAGACTGAAACTGGGTGTTTATCTAATGGCCATTTCATTTTCACCTTTTT
AGCTTCGAATTCAAACCTAGTGGTATGGTAGGTTATTCGCAAGGAAACCT
TGGAGGAGCGATGGCAATGGCAGCTGCACGACCCTTCTTATCAGAAATGG
GATGTTTGCCAGTCAAACATTTTGTCGTCATTCCTTACGTAAGTTAAAAT
TGAAATCGTTATGGATTGTGGACATTGCAATTAGCAAAAAACTTATCAAT
ATGATTTTGGCAATACTCACTCGTCGTTATGCTTAGCGCTTTTTGGTtct
tatgataaaatatttcttcGGTGAATTTCCAATTTTATGATATTTGGTCT
CTACACTGCCCCCTGGAACACTATCCCTGAATTTCGTCTGATAATTTTAT
TACATCCAGttcttttaagaatttttttataagaaagctttaatttgcaa
aattgaaaaaatctgtTAACCAAAGGCTAAAGAGTCTTCATAACTCAAAC
TTCTTTAAAGTGTGCTTCACCTAAGGTTTCTTACTCTTTAGGTTCAAAAT
GAAGTGAAGGAAGATGGCAGCACAGACAACACTCATATTCACAGCAGTCT
CAAGAAGTTATTCACTCAAGTTGAATGGTGGGCCCAAGCTGCCAAAACTC
AACGAACTTCTGGAACACCCAATTAGATGTTATTTTCAAATGTATTGTTA
ATCTTCTTACCATGTTTGTAAATATTAGAATGCATTATATattatggaaa
aaaatataattttacagTTATGATAACATTGAAGTATTGCAAATTGTACC
CCGCTATCTTAATCTGCCAAAAACGGCTCTAAAATTATAGTCCATGATAC
AAAATCCTCCGTCAGTAAACGATCAGTTTAGAAATGGCTGGGTTGATAGA
NG Coding sequence (CDS) from alignment at sc0000010:39342..41843+ >TCONS_00001310 ID=TCONS_00001310|Name=TCONS_00001310|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000010:39342..41843+ (Clytia hemisphaerica)
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
ATGACTTCGTTGAAAATCGTTTGTATCATGTCATCAGTTCGTGATGGACG
AATGGCAGAACGAATGAGAattcttattcaaaaacaattcGATGAAATCT
TGACACCCAAAGGACATTCTATTCATTTCATCGATCCTGAGGAATACGAT
TTTCCAGTCTTGAAGACACCTCTTCATTTCTACCCTGATCAATCGGAAGC
ACcagaaaaattacgaaaattgaACGACATTGTCATCGCGGCCGATGCAT
ACATCATTCTCACTGCTGAATACAATCGAAGCATGCCACCTGCTTTAACC
AACTTAATGAACCACTTACCTCCTCCAAGCTTCGAATTCAAACCTAGTGG
TATGGTAGGTTATTCGCAAGGAAACCTTGGAGGAGCGATGGCAATGGCAG
CTGCACGACCCTTCTTATCAGAAATGGGATGTTTGCCAGTCAAACATTTT
GTCGTCATTCCTTACGTTCAAAATGAAGTGAAGGAAGATGGCAGCACAGA
CAACACTCATATTCACAGCAGTCTCAAGAAGTTATTCACTCAAGTTGAAT
GGTGGGCCCAAGCTGCCAAAACTCAACGAACTTCTGGAACACCCAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001310-exon-sc0000010-1491911889:39342..40196 | TCONS_00001310-exon-sc0000010-1491911889:39342..40196 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1510915933:39342..40196 | TCONS_00001310-exon-sc0000010-1510915933:39342..40196 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1575043694:39342..40196 | TCONS_00001310-exon-sc0000010-1575043694:39342..40196 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1491911889:40451..40646 | TCONS_00001310-exon-sc0000010-1491911889:40451..40646 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1510915933:40451..40646 | TCONS_00001310-exon-sc0000010-1510915933:40451..40646 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1575043694:40451..40646 | TCONS_00001310-exon-sc0000010-1575043694:40451..40646 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1491911889:40994..41129 | TCONS_00001310-exon-sc0000010-1491911889:40994..41129 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1510915933:40994..41129 | TCONS_00001310-exon-sc0000010-1510915933:40994..41129 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1575043694:40994..41129 | TCONS_00001310-exon-sc0000010-1575043694:40994..41129 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1491911889:41483..41843 | TCONS_00001310-exon-sc0000010-1491911889:41483..41843 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1510915933:41483..41843 | TCONS_00001310-exon-sc0000010-1510915933:41483..41843 | Clytia hemisphaerica | exon |
| TCONS_00001310-exon-sc0000010-1575043694:41483..41843 | TCONS_00001310-exon-sc0000010-1575043694:41483..41843 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:39342..41843 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029039 | Flavoprotein-like_dom |
| IPR005025 | FMN_Rdtase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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