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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000822 ID=TCONS_00000822|Name=TCONS_00000822|organism=Clytia hemisphaerica|type=transcript|length=2076bp
CTATTTTCCATAATATTTGCAACTTGAGAACGTGAAAAGGGGTCAGAATA
AACAAAACTAAGGCACACAAAGTAAAAGGTGCattcatttcaaaactttt
tcctCCAAATCTCGAAATCTGATCTGTTTATTATGCATCAACACCTATTC
TAAACATTGGGGAGATAACGTAAACTTGATTATCTATATAATACATGTTT
ATTCAAGCATTTTCTTTTGGTAGTTCAAAGGAAAACAGAACTTTGGTTTC
TGATTGGCGGAGAGAGTGCAGTGACGTAGTTGTCCAGTTACCGTTATGTC
GGTTCGTGTCAACAAAAGATTTCGTTATCGCGATATTTCGCATAACATGC
TGCTATAGAAGAAATTACTTTTATGTGTGTCAAGGCAAGATGAGGCAACG
ttcttttcaattcaaaaatcaacGATTCTTTTACGTTTGTGACATAAGCT
GAAACAACTTTCTTTAGAGAAGTTGTTGTGTGAAGGAGTGATCAAGGATA
ATTGCTACATAGTCAAAAGAAATGGCTTCAAAGCATCAAACACAAACTTT
AAAAGAACTCTTACAAAAACCAAACATGCAAACAGAGTTTAATAAAGCAT
ACAGTCTTTCACCAAATGGTCATTTCAAATACGTTAAAAGACAAACTTCA
AAGATGTTTTATCATGGGACGGTACACCGATCGCGATTGATGCCGACTAA
AGATCGTATACGTCGTCCGTTGAATTGTTTTATGGTTTTCTCGCATCTTG
AACGCAAACGAGTAGCTGAGGAACACCCTGAATTACACAATGCTGATTTA
AGCAAAATTCTCGGTAAAAGATGGAAAACACTTTCACCGTCAGAAAAACA
GCCTTACATCGAGGAAGCAGAGAGGATTAGACAGCTTCACACTGAAATTT
ATCCTGATTATAAATATCAACCGCGTAGAAAAAATCAACCGAAAAAGCCT
GGTGAAGAATCTCATCAATCAGAAAGCAATACTGAGCTATCGTCACCAAC
AAACACCAGGAGCGAAACACATTCACCTTCTAACAATGCAATGAGATCGG
CTTCATCATCCAATGATATGAATCTACCGCCCATTCCTCAGCCATTAACT
ACACCAATAAACCATCAGAATCCACCCAACACTTCATATCAATTACCATC
TTACGAAGGTAACCTATCAGCTCCAAATACACCAATTCTGACATCAGGTT
CACATCAAGAATATCCAACCAACAACAACGAATATATTGATTACACTGAA
CACCCTTTACCACAGAGCTTCCCGCCCACACCCACTATTAGCCCAGCTGC
AGTCGATCACCAACGCCCTATGTTCGTTTTTGAGAATCGGCAAAATGCTT
TTCCACAGAGTAAGCAGTCTTCTCCGATGACGGAACAAGATTATGAAGCT
AATGCTATTCGATGGCTGGCTTGCGATCTTCAGCAGAATGTCGACCAAGT
TTCTTCTCCTCAGAGTTACCAAAGCTTCAATGAGCCACATAATTACCAGG
AACCTTATCATAATGGCAATCCACAACAATTTTACCAACAAAACGTCCAA
CAACAAATTAATATGCAAGATTATCGaaataatattgaaaatatgaactt
tcaacAGCAAAACTTTCCCTTAGATGCCAACGCCAATAATAATATGGTTT
CGCCCTTttagaagaagaagatgaagaaaaacgaagaaagaaaaaagaaa
attttttatcctaATTAAATCTTAAAGTTTACGATTCTTTGATGTTTACT
GAGCCTAGACTTACATGTTTAGGTTCAAcattctttattattttttatcg
tAAAAATCGTAAAActaaaattatatattttaaaGTATTCAAAAACGtaa
agttaaaaaagaaaagttttataggtaatattttaggtatttttttctct
tgacaattatttttttttgaattttttaatatGCAAGCTCTTTTTAAATC
CTTTATCATTAATTTATTGTAAACCCTTCTTTTATtagaactatttaaaa
atatgtTCCCCTCTAGATGCtactttttgtctgaaaaaagaaagaaaaaa
ttagttaaaaaagaaaaatgacagtg Run BLAST on NCBI protein sequence of TCONS_00000822-protein >TCONS_00000822-protein ID=TCONS_00000822-protein|Name=TCONS_00000822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MASKHQTQTLKELLQKPNMQTEFNKAYSLSPNGHFKYVKRQTSKMFYHGT
VHRSRLMPTKDRIRRPLNCFMVFSHLERKRVAEEHPELHNADLSKILGKR
WKTLSPSEKQPYIEEAERIRQLHTEIYPDYKYQPRRKNQPKKPGEESHQS
ESNTELSSPTNTRSETHSPSNNAMRSASSSNDMNLPPIPQPLTTPINHQN
PPNTSYQLPSYEGNLSAPNTPILTSGSHQEYPTNNNEYIDYTEHPLPQSF
PPTPTISPAAVDHQRPMFVFENRQNAFPQSKQSSPMTEQDYEANAIRWLA
CDLQQNVDQVSSPQSYQSFNEPHNYQEPYHNGNPQQFYQQNVQQQINMQD
YRNNIENMNFQQQNFPLDANANNNMVSPF Run BLAST on NCBI transcript from alignment at sc0000005:656269..658722- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000822 ID=TCONS_00000822|Name=TCONS_00000822|organism=Clytia hemisphaerica|type=transcript|length=2454bp|location=Sequence derived from alignment at sc0000005:656269..658722- (Clytia hemisphaerica)
CTATTTTCCATAATATTTGCAACTTGAGAACGTGAAAAGGGGTCAGAATA
AACAAAACTAAGGCACACAAAGTAAAAGGTGCATTCATTTCAAAACTTTT
TCCTCCAAATCTCGAAATCTGATCTGTTTATTATGCATCAACACCTATTC
TAAACATTGGGGAGATAACGTAAACTTGATTATCTATATAATACATGTTT
ATTCAAGCATTTTCTTTTGGTAGTTCAAAGGAAAACAGAACTTTGGTTTC
TGATTGGCGGAGAGAGTGCAGTGACGTAGTTGTCCAGTTACCGTTATGTC
GGTTCGTGTCAACAAAAGATTTCGTTATCGCGATATTTCGCATAACATGC
TGCTATAGAAGAAATTACTTTTATGTGTGTCAAGGCAAGATGAGGCAACG
TTCTTTTCAATTCAAAAATCAACGATTCTTTTACGTTTGTGACATAAGCT
GAAACAACTTTCTTTAGAGAAGTTGTTGTGTGAAGGAGTGATCAAGGATA
ATTGCTACATAGTCAAAAGAAATGGCTTCAAAGCATCAAACACAAACTTT
AAAAGAACTCTTACAAAAACCAAACATGCAAACAGAGTTTAATAAAGCAT
ACAGTCTTTCACCAAATGGTCATTTCAAATACGTTAAAAGACAAACTTCA
AAGATGTTTTATCATGGGACGGTACACCGATCGCGATTGATGCCGACTAA
AGATCGTATACGTCGTCCGTTGAATTGTTTTATGGTTTTCTCGCATCTTG
AACGCAAACGAGTAGCTGAGGAACACCCTGAATTACACAATGCTGATTTA
AGCAAAATTCTCGGTAAGTTTTTTAAGATATTCCCCATCCTCCCTCAAAC
TTATCAAAGTTTCTATCGTACGAGTCTAGTGTGGTGATATAATGTTGAGA
ATTGTCTTTCATCCTTCTTGGTATAATGTCTATGTTCTCAAATTTCAAAT
TTAATTTTTTGATTGGCAACTTTATTTTTGTTGTTGATTCATTTCACCAA
AGCTATTCCACAAAAAGTCTTTATTCTTTAACAGGAAATATTTTGACCGC
CATTTTGTTTGTGTTTAAAATTAAGTTTTGCAAGAGTGCGACTTTTTCAT
TTTGGAAATTCTAACAAGAAATATAATTTGGTCAAACTAGGTCAATAACA
CACCTAATTAAAACTCTATTGTTATTTTTCTCCGACTCCAGGTAAAAGAT
GGAAAACACTTTCACCGTCAGAAAAACAGCCTTACATCGAGGAAGCAGAG
AGGATTAGACAGCTTCACACTGAAATTTATCCTGATTATAAATATCAACC
GCGTAGAAAAAATCAACCGAAAAAGCCTGGTGAAGAATCTCATCAATCAG
AAAGCAATACTGAGCTATCGTCACCAACAAACACCAGGAGCGAAACACAT
TCACCTTCTAACAATGCAATGAGATCGGCTTCATCATCCAATGATATGAA
TCTACCGCCCATTCCTCAGCCATTAACTACACCAATAAACCATCAGAATC
CACCCAACACTTCATATCAATTACCATCTTACGAAGGTAACCTATCAGCT
CCAAATACACCAATTCTGACATCAGGTTCACATCAAGAATATCCAACCAA
CAACAACGAATATATTGATTACACTGAACACCCTTTACCACAGAGCTTCC
CGCCCACACCCACTATTAGCCCAGCTGCAGTCGATCACCAACGCCCTATG
TTCGTTTTTGAGAATCGGCAAAATGCTTTTCCACAGAGTAAGCAGTCTTC
TCCGATGACGGAACAAGATTATGAAGCTAATGCTATTCGATGGCTGGCTT
GCGATCTTCAGCAGAATGTCGACCAAGTTTCTTCTCCTCAGAGTTACCAA
AGCTTCAATGAGCCACATAATTACCAGGAACCTTATCATAATGGCAATCC
ACAACAATTTTACCAACAAAACGTCCAACAACAAATTAATATGCAAGATT
ATCGAAATAATATTGAAAATATGAACTTTCAACAGCAAAACTTTCCCTTA
GATGCCAACGCCAATAATAATATGGTTTCGCCCTTTTAGAAGAAGAAGAT
GAAGAAAAACGAAGAAAGAAAAAAGAAAATTTTTTATCCTAATTAAATCT
TAAAGTTTACGATTCTTTGATGTTTACTGAGCCTAGACTTACATGTTTAG
GTTCAACATTCTTTATTATTTTTTATCGTAAAAATCGTAAAACTAAAATT
ATATATTTTAAAGTATTCAAAAACGTAAAGTTAAAAAAGAAAAGTTTTAT
AGGTAATATTTTAGGTATTTTTTTCTCTTGACAATTATTTTTTTTTGAAT
TTTTTAATATGCAAGCTCTTTTTAAATCCTTTATCATTAATTTATTGTAA
ACCCTTCTTTTATTAGAACTATTTAAAAATATGTTCCCCTCTAGATGCTA
CTTTTTGTCTGAAAAAAGAAAGAAAAAATTAGTTAAAAAAGAAAAATGAC
AGTG Coding sequence (CDS) from alignment at sc0000005:656269..658722- >TCONS_00000822 ID=TCONS_00000822|Name=TCONS_00000822|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000005:656269..658722- (Clytia hemisphaerica)
GTAAAAGATGGAAAACACTTTCACCGTCAGAAAAACAGCCTTACATCGAG
GAAGCAGAGAGGATTAGACAGCTTCACACTGAAATTTATCCTGATTATAA
ATATCAACCGCGTAGAAAAAATCAACCGAAAAAGCCTGGTGAAGAATCTC
ATCAATCAGAAAGCAATACTGAGCTATCGTCACCAACAAACACCAGGAGC
GAAACACATTCACCTTCTAACAATGCAATGAGATCGGCTTCATCATCCAA
TGATATGAATCTACCGCCCATTCCTCAGCCATTAACTACACCAATAAACC
ATCAGAATCCACCCAACACTTCATATCAATTACCATCTTACGAAGGTAAC
CTATCAGCTCCAAATACACCAATTCTGACATCAGGTTCACATCAAGAATA
TCCAACCAACAACAACGAATATATTGATTACACTGAACACCCTTTACCAC
AGAGCTTCCCGCCCACACCCACTATTAGCCCAGCTGCAGTCGATCACCAA
CGCCCTATGTTCGTTTTTGAGAATCGGCAAAATGCTTTTCCACAGAGTAA
GCAGTCTTCTCCGATGACGGAACAAGATTATGAAGCTAATGCTATTCGAT
GGCTGGCTTGCGATCTTCAGCAGAATGTCGACCAAGTTTCTTCTCCTCAG
AGTTACCAAAGCTTCAATGAGCCACATAATTACCAGGAACCTTATCATAA
TGGCAATCCACAACAATTTTACCAACAAAACGTCCAACAACAAATTAATA
TGCAAGATTATCGAAATAATATTGAAAATATGAACTTTCAACAGCAAAAC
TTTCCCTTAGATGCCAACGCCAATAATAATATGGTTTCGCCCTTTTAGAT
GGCTTCAAAGCATCAAACACAAACTTTAAAAGAACTCTTACAAAAACCAA
ACATGCAAACAGAGTTTAATAAAGCATACAGTCTTTCACCAAATGGTCAT
TTCAAATACGTTAAAAGACAAACTTCAAAGATGTTTTATCATGGGACGGT
ACACCGATCGCGATTGATGCCGACTAAAGATCGTATACGTCGTCCGTTGA
ATTGTTTTATGGTTTTCTCGCATCTTGAACGCAAACGAGTAGCTGAGGAA
CACCCTGAATTACACAATGCTGATTTAAGCAAAATTCTCGGTAAAAGATG
GAAAACACTTTCACCGTCAGAAAAACAGCCTTACATCGAGGAAGCAGAGA
GGATTAGACAGCTTCACACTGAAATTTATCCTGATTATAAATATCAACCG
CGTAGAAAAAATCAACCGAAAAAGCCTGGTGAAGAATCTCATCAATCAGA
AAGCAATACTGAGCTATCGTCACCAACAAACACCAGGAGCGAAACACATT
CACCTTCTAACAATGCAATGAGATCGGCTTCATCATCCAATGATATGAAT
CTACCGCCCATTCCTCAGCCATTAACTACACCAATAAACCATCAGAATCC
ACCCAACACTTCATATCAATTACCATCTTACGAAGGTAACCTATCAGCTC
CAAATACACCAATTCTGACATCAGGTTCACATCAAGAATATCCAACCAAC
AACAACGAATATATTGATTACACTGAACACCCTTTACCACAGAGCTTCCC
GCCCACACCCACTATTAGCCCAGCTGCAGTCGATCACCAACGCCCTATGT
TCGTTTTTGAGAATCGGCAAAATGCTTTTCCACAGAGTAAGCAGTCTTCT
CCGATGACGGAACAAGATTATGAAGCTAATGCTATTCGATGGCTGGCTTG
CGATCTTCAGCAGAATGTCGACCAAGTTTCTTCTCCTCAGAGTTACCAAA
GCTTCAATGAGCCACATAATTACCAGGAACCTTATCATAATGGCAATCCA
CAACAATTTTACCAACAAAACGTCCAACAACAAATTAATATGCAAGATTA
TCGAAATAATATTGAAAATATGAACTTTCAACAGCAAAACTTTCCCTTAG
ATGCCAACGCCAATAATAATATGGTTTCGCCCTTTTAGATGGCTTCAAAG
CATCAAACACAAACTTTAAAAGAACTCTTACAAAAACCAAACATGCAAAC
AGAGTTTAATAAAGCATACAGTCTTTCACCAAATGGTCATTTCAAATACG
TTAAAAGACAAACTTCAAAGATGTTTTATCATGGGACGGTACACCGATCG
CGATTGATGCCGACTAAAGATCGTATACGTCGTCCGTTGAATTGTTTTAT
GGTTTTCTCGCATCTTGAACGCAAACGAGTAGCTGAGGAACACCCTGAAT
TACACAATGCTGATTTAAGCAAAATTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000822-exon-sc0000005-1575043694:657910..658722 | TCONS_00000822-exon-sc0000005-1575043694:657910..658722 | Clytia hemisphaerica | exon |
| TCONS_00000822-exon-sc0000005-1575043694:656269..657531 | TCONS_00000822-exon-sc0000005-1575043694:656269..657531 | Clytia hemisphaerica | exon |
| TCONS_00000822-exon-sc0000005-1510915933:657910..658722 | TCONS_00000822-exon-sc0000005-1510915933:657910..658722 | Clytia hemisphaerica | exon |
| TCONS_00000822-exon-sc0000005-1510915933:656269..657531 | TCONS_00000822-exon-sc0000005-1510915933:656269..657531 | Clytia hemisphaerica | exon |
| TCONS_00000822-exon-sc0000005-1491911889:657910..658722 | TCONS_00000822-exon-sc0000005-1491911889:657910..658722 | Clytia hemisphaerica | exon |
| TCONS_00000822-exon-sc0000005-1491911889:656269..657531 | TCONS_00000822-exon-sc0000005-1491911889:656269..657531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000005 | supercontig | sc0000005:656269..658722 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009071 | HMG_box_dom |
Blast
BLAST of TCONS_00000822 vs. Swiss-Prot (Human)
Match: SOX7 (Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.653e-26 Identity = 49/84 (58.33%), Postives = 70/84 (83.33%), Query Frame = 3
Query: 696 TKDRIRRPLNCFMVFSHLERKRVAEEHPELHNADLSKILGKRWKTLSPSEKQPYIEEAERIRQLHTEIYPDYKYQPRRKNQPKK 947
++ RIRRP+N FMV++ ERKR+A ++P+LHNA+LSK+LGK WK L+ S+K+PY++EAER+R H + YP+YKY+PRRK Q K+
Sbjct: 41 SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKR 124
The following BLAST results are available for this feature:
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