TCONS_00000822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000822
Unique NameTCONS_00000822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000822 ID=TCONS_00000822|Name=TCONS_00000822|organism=Clytia hemisphaerica|type=transcript|length=2076bp
CTATTTTCCATAATATTTGCAACTTGAGAACGTGAAAAGGGGTCAGAATA
AACAAAACTAAGGCACACAAAGTAAAAGGTGCattcatttcaaaactttt
tcctCCAAATCTCGAAATCTGATCTGTTTATTATGCATCAACACCTATTC
TAAACATTGGGGAGATAACGTAAACTTGATTATCTATATAATACATGTTT
ATTCAAGCATTTTCTTTTGGTAGTTCAAAGGAAAACAGAACTTTGGTTTC
TGATTGGCGGAGAGAGTGCAGTGACGTAGTTGTCCAGTTACCGTTATGTC
GGTTCGTGTCAACAAAAGATTTCGTTATCGCGATATTTCGCATAACATGC
TGCTATAGAAGAAATTACTTTTATGTGTGTCAAGGCAAGATGAGGCAACG
ttcttttcaattcaaaaatcaacGATTCTTTTACGTTTGTGACATAAGCT
GAAACAACTTTCTTTAGAGAAGTTGTTGTGTGAAGGAGTGATCAAGGATA
ATTGCTACATAGTCAAAAGAAATGGCTTCAAAGCATCAAACACAAACTTT
AAAAGAACTCTTACAAAAACCAAACATGCAAACAGAGTTTAATAAAGCAT
ACAGTCTTTCACCAAATGGTCATTTCAAATACGTTAAAAGACAAACTTCA
AAGATGTTTTATCATGGGACGGTACACCGATCGCGATTGATGCCGACTAA
AGATCGTATACGTCGTCCGTTGAATTGTTTTATGGTTTTCTCGCATCTTG
AACGCAAACGAGTAGCTGAGGAACACCCTGAATTACACAATGCTGATTTA
AGCAAAATTCTCGGTAAAAGATGGAAAACACTTTCACCGTCAGAAAAACA
GCCTTACATCGAGGAAGCAGAGAGGATTAGACAGCTTCACACTGAAATTT
ATCCTGATTATAAATATCAACCGCGTAGAAAAAATCAACCGAAAAAGCCT
GGTGAAGAATCTCATCAATCAGAAAGCAATACTGAGCTATCGTCACCAAC
AAACACCAGGAGCGAAACACATTCACCTTCTAACAATGCAATGAGATCGG
CTTCATCATCCAATGATATGAATCTACCGCCCATTCCTCAGCCATTAACT
ACACCAATAAACCATCAGAATCCACCCAACACTTCATATCAATTACCATC
TTACGAAGGTAACCTATCAGCTCCAAATACACCAATTCTGACATCAGGTT
CACATCAAGAATATCCAACCAACAACAACGAATATATTGATTACACTGAA
CACCCTTTACCACAGAGCTTCCCGCCCACACCCACTATTAGCCCAGCTGC
AGTCGATCACCAACGCCCTATGTTCGTTTTTGAGAATCGGCAAAATGCTT
TTCCACAGAGTAAGCAGTCTTCTCCGATGACGGAACAAGATTATGAAGCT
AATGCTATTCGATGGCTGGCTTGCGATCTTCAGCAGAATGTCGACCAAGT
TTCTTCTCCTCAGAGTTACCAAAGCTTCAATGAGCCACATAATTACCAGG
AACCTTATCATAATGGCAATCCACAACAATTTTACCAACAAAACGTCCAA
CAACAAATTAATATGCAAGATTATCGaaataatattgaaaatatgaactt
tcaacAGCAAAACTTTCCCTTAGATGCCAACGCCAATAATAATATGGTTT
CGCCCTTttagaagaagaagatgaagaaaaacgaagaaagaaaaaagaaa
attttttatcctaATTAAATCTTAAAGTTTACGATTCTTTGATGTTTACT
GAGCCTAGACTTACATGTTTAGGTTCAAcattctttattattttttatcg
tAAAAATCGTAAAActaaaattatatattttaaaGTATTCAAAAACGtaa
agttaaaaaagaaaagttttataggtaatattttaggtatttttttctct
tgacaattatttttttttgaattttttaatatGCAAGCTCTTTTTAAATC
CTTTATCATTAATTTATTGTAAACCCTTCTTTTATtagaactatttaaaa
atatgtTCCCCTCTAGATGCtactttttgtctgaaaaaagaaagaaaaaa
ttagttaaaaaagaaaaatgacagtg
Run BLAST on NCBI

protein sequence of TCONS_00000822-protein

>TCONS_00000822-protein ID=TCONS_00000822-protein|Name=TCONS_00000822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MASKHQTQTLKELLQKPNMQTEFNKAYSLSPNGHFKYVKRQTSKMFYHGT
VHRSRLMPTKDRIRRPLNCFMVFSHLERKRVAEEHPELHNADLSKILGKR
WKTLSPSEKQPYIEEAERIRQLHTEIYPDYKYQPRRKNQPKKPGEESHQS
ESNTELSSPTNTRSETHSPSNNAMRSASSSNDMNLPPIPQPLTTPINHQN
PPNTSYQLPSYEGNLSAPNTPILTSGSHQEYPTNNNEYIDYTEHPLPQSF
PPTPTISPAAVDHQRPMFVFENRQNAFPQSKQSSPMTEQDYEANAIRWLA
CDLQQNVDQVSSPQSYQSFNEPHNYQEPYHNGNPQQFYQQNVQQQINMQD
YRNNIENMNFQQQNFPLDANANNNMVSPF
Run BLAST on NCBI

transcript from alignment at sc0000005:656269..658722-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000822 ID=TCONS_00000822|Name=TCONS_00000822|organism=Clytia hemisphaerica|type=transcript|length=2454bp|location=Sequence derived from alignment at sc0000005:656269..658722- (Clytia hemisphaerica)
CTATTTTCCATAATATTTGCAACTTGAGAACGTGAAAAGGGGTCAGAATA
AACAAAACTAAGGCACACAAAGTAAAAGGTGCATTCATTTCAAAACTTTT
TCCTCCAAATCTCGAAATCTGATCTGTTTATTATGCATCAACACCTATTC
TAAACATTGGGGAGATAACGTAAACTTGATTATCTATATAATACATGTTT
ATTCAAGCATTTTCTTTTGGTAGTTCAAAGGAAAACAGAACTTTGGTTTC
TGATTGGCGGAGAGAGTGCAGTGACGTAGTTGTCCAGTTACCGTTATGTC
GGTTCGTGTCAACAAAAGATTTCGTTATCGCGATATTTCGCATAACATGC
TGCTATAGAAGAAATTACTTTTATGTGTGTCAAGGCAAGATGAGGCAACG
TTCTTTTCAATTCAAAAATCAACGATTCTTTTACGTTTGTGACATAAGCT
GAAACAACTTTCTTTAGAGAAGTTGTTGTGTGAAGGAGTGATCAAGGATA
ATTGCTACATAGTCAAAAGAAATGGCTTCAAAGCATCAAACACAAACTTT
AAAAGAACTCTTACAAAAACCAAACATGCAAACAGAGTTTAATAAAGCAT
ACAGTCTTTCACCAAATGGTCATTTCAAATACGTTAAAAGACAAACTTCA
AAGATGTTTTATCATGGGACGGTACACCGATCGCGATTGATGCCGACTAA
AGATCGTATACGTCGTCCGTTGAATTGTTTTATGGTTTTCTCGCATCTTG
AACGCAAACGAGTAGCTGAGGAACACCCTGAATTACACAATGCTGATTTA
AGCAAAATTCTCGGTAAGTTTTTTAAGATATTCCCCATCCTCCCTCAAAC
TTATCAAAGTTTCTATCGTACGAGTCTAGTGTGGTGATATAATGTTGAGA
ATTGTCTTTCATCCTTCTTGGTATAATGTCTATGTTCTCAAATTTCAAAT
TTAATTTTTTGATTGGCAACTTTATTTTTGTTGTTGATTCATTTCACCAA
AGCTATTCCACAAAAAGTCTTTATTCTTTAACAGGAAATATTTTGACCGC
CATTTTGTTTGTGTTTAAAATTAAGTTTTGCAAGAGTGCGACTTTTTCAT
TTTGGAAATTCTAACAAGAAATATAATTTGGTCAAACTAGGTCAATAACA
CACCTAATTAAAACTCTATTGTTATTTTTCTCCGACTCCAGGTAAAAGAT
GGAAAACACTTTCACCGTCAGAAAAACAGCCTTACATCGAGGAAGCAGAG
AGGATTAGACAGCTTCACACTGAAATTTATCCTGATTATAAATATCAACC
GCGTAGAAAAAATCAACCGAAAAAGCCTGGTGAAGAATCTCATCAATCAG
AAAGCAATACTGAGCTATCGTCACCAACAAACACCAGGAGCGAAACACAT
TCACCTTCTAACAATGCAATGAGATCGGCTTCATCATCCAATGATATGAA
TCTACCGCCCATTCCTCAGCCATTAACTACACCAATAAACCATCAGAATC
CACCCAACACTTCATATCAATTACCATCTTACGAAGGTAACCTATCAGCT
CCAAATACACCAATTCTGACATCAGGTTCACATCAAGAATATCCAACCAA
CAACAACGAATATATTGATTACACTGAACACCCTTTACCACAGAGCTTCC
CGCCCACACCCACTATTAGCCCAGCTGCAGTCGATCACCAACGCCCTATG
TTCGTTTTTGAGAATCGGCAAAATGCTTTTCCACAGAGTAAGCAGTCTTC
TCCGATGACGGAACAAGATTATGAAGCTAATGCTATTCGATGGCTGGCTT
GCGATCTTCAGCAGAATGTCGACCAAGTTTCTTCTCCTCAGAGTTACCAA
AGCTTCAATGAGCCACATAATTACCAGGAACCTTATCATAATGGCAATCC
ACAACAATTTTACCAACAAAACGTCCAACAACAAATTAATATGCAAGATT
ATCGAAATAATATTGAAAATATGAACTTTCAACAGCAAAACTTTCCCTTA
GATGCCAACGCCAATAATAATATGGTTTCGCCCTTTTAGAAGAAGAAGAT
GAAGAAAAACGAAGAAAGAAAAAAGAAAATTTTTTATCCTAATTAAATCT
TAAAGTTTACGATTCTTTGATGTTTACTGAGCCTAGACTTACATGTTTAG
GTTCAACATTCTTTATTATTTTTTATCGTAAAAATCGTAAAACTAAAATT
ATATATTTTAAAGTATTCAAAAACGTAAAGTTAAAAAAGAAAAGTTTTAT
AGGTAATATTTTAGGTATTTTTTTCTCTTGACAATTATTTTTTTTTGAAT
TTTTTAATATGCAAGCTCTTTTTAAATCCTTTATCATTAATTTATTGTAA
ACCCTTCTTTTATTAGAACTATTTAAAAATATGTTCCCCTCTAGATGCTA
CTTTTTGTCTGAAAAAAGAAAGAAAAAATTAGTTAAAAAAGAAAAATGAC
AGTG

Coding sequence (CDS) from alignment at sc0000005:656269..658722-

>TCONS_00000822 ID=TCONS_00000822|Name=TCONS_00000822|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000005:656269..658722- (Clytia hemisphaerica)
GTAAAAGATGGAAAACACTTTCACCGTCAGAAAAACAGCCTTACATCGAG
GAAGCAGAGAGGATTAGACAGCTTCACACTGAAATTTATCCTGATTATAA
ATATCAACCGCGTAGAAAAAATCAACCGAAAAAGCCTGGTGAAGAATCTC
ATCAATCAGAAAGCAATACTGAGCTATCGTCACCAACAAACACCAGGAGC
GAAACACATTCACCTTCTAACAATGCAATGAGATCGGCTTCATCATCCAA
TGATATGAATCTACCGCCCATTCCTCAGCCATTAACTACACCAATAAACC
ATCAGAATCCACCCAACACTTCATATCAATTACCATCTTACGAAGGTAAC
CTATCAGCTCCAAATACACCAATTCTGACATCAGGTTCACATCAAGAATA
TCCAACCAACAACAACGAATATATTGATTACACTGAACACCCTTTACCAC
AGAGCTTCCCGCCCACACCCACTATTAGCCCAGCTGCAGTCGATCACCAA
CGCCCTATGTTCGTTTTTGAGAATCGGCAAAATGCTTTTCCACAGAGTAA
GCAGTCTTCTCCGATGACGGAACAAGATTATGAAGCTAATGCTATTCGAT
GGCTGGCTTGCGATCTTCAGCAGAATGTCGACCAAGTTTCTTCTCCTCAG
AGTTACCAAAGCTTCAATGAGCCACATAATTACCAGGAACCTTATCATAA
TGGCAATCCACAACAATTTTACCAACAAAACGTCCAACAACAAATTAATA
TGCAAGATTATCGAAATAATATTGAAAATATGAACTTTCAACAGCAAAAC
TTTCCCTTAGATGCCAACGCCAATAATAATATGGTTTCGCCCTTTTAGAT
GGCTTCAAAGCATCAAACACAAACTTTAAAAGAACTCTTACAAAAACCAA
ACATGCAAACAGAGTTTAATAAAGCATACAGTCTTTCACCAAATGGTCAT
TTCAAATACGTTAAAAGACAAACTTCAAAGATGTTTTATCATGGGACGGT
ACACCGATCGCGATTGATGCCGACTAAAGATCGTATACGTCGTCCGTTGA
ATTGTTTTATGGTTTTCTCGCATCTTGAACGCAAACGAGTAGCTGAGGAA
CACCCTGAATTACACAATGCTGATTTAAGCAAAATTCTCGGTAAAAGATG
GAAAACACTTTCACCGTCAGAAAAACAGCCTTACATCGAGGAAGCAGAGA
GGATTAGACAGCTTCACACTGAAATTTATCCTGATTATAAATATCAACCG
CGTAGAAAAAATCAACCGAAAAAGCCTGGTGAAGAATCTCATCAATCAGA
AAGCAATACTGAGCTATCGTCACCAACAAACACCAGGAGCGAAACACATT
CACCTTCTAACAATGCAATGAGATCGGCTTCATCATCCAATGATATGAAT
CTACCGCCCATTCCTCAGCCATTAACTACACCAATAAACCATCAGAATCC
ACCCAACACTTCATATCAATTACCATCTTACGAAGGTAACCTATCAGCTC
CAAATACACCAATTCTGACATCAGGTTCACATCAAGAATATCCAACCAAC
AACAACGAATATATTGATTACACTGAACACCCTTTACCACAGAGCTTCCC
GCCCACACCCACTATTAGCCCAGCTGCAGTCGATCACCAACGCCCTATGT
TCGTTTTTGAGAATCGGCAAAATGCTTTTCCACAGAGTAAGCAGTCTTCT
CCGATGACGGAACAAGATTATGAAGCTAATGCTATTCGATGGCTGGCTTG
CGATCTTCAGCAGAATGTCGACCAAGTTTCTTCTCCTCAGAGTTACCAAA
GCTTCAATGAGCCACATAATTACCAGGAACCTTATCATAATGGCAATCCA
CAACAATTTTACCAACAAAACGTCCAACAACAAATTAATATGCAAGATTA
TCGAAATAATATTGAAAATATGAACTTTCAACAGCAAAACTTTCCCTTAG
ATGCCAACGCCAATAATAATATGGTTTCGCCCTTTTAGATGGCTTCAAAG
CATCAAACACAAACTTTAAAAGAACTCTTACAAAAACCAAACATGCAAAC
AGAGTTTAATAAAGCATACAGTCTTTCACCAAATGGTCATTTCAAATACG
TTAAAAGACAAACTTCAAAGATGTTTTATCATGGGACGGTACACCGATCG
CGATTGATGCCGACTAAAGATCGTATACGTCGTCCGTTGAATTGTTTTAT
GGTTTTCTCGCATCTTGAACGCAAACGAGTAGCTGAGGAACACCCTGAAT
TACACAATGCTGATTTAAGCAAAATTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000493XLOC_000493Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000822-proteinTCONS_00000822-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000822-exon-sc0000005-1575043694:657910..658722TCONS_00000822-exon-sc0000005-1575043694:657910..658722Clytia hemisphaericaexon
TCONS_00000822-exon-sc0000005-1575043694:656269..657531TCONS_00000822-exon-sc0000005-1575043694:656269..657531Clytia hemisphaericaexon
TCONS_00000822-exon-sc0000005-1510915933:657910..658722TCONS_00000822-exon-sc0000005-1510915933:657910..658722Clytia hemisphaericaexon
TCONS_00000822-exon-sc0000005-1510915933:656269..657531TCONS_00000822-exon-sc0000005-1510915933:656269..657531Clytia hemisphaericaexon
TCONS_00000822-exon-sc0000005-1491911889:657910..658722TCONS_00000822-exon-sc0000005-1491911889:657910..658722Clytia hemisphaericaexon
TCONS_00000822-exon-sc0000005-1491911889:656269..657531TCONS_00000822-exon-sc0000005-1491911889:656269..657531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:656269..658722 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0760102	0.0926524	0.0645469	0.0420994	0.666276	0.6885	51.0847	56.0816	40.2569	58.9291	72.5997	36.6885	33.794	32.6673	60.2313	87.5535	16.1767	20.7038	24.1997	24.6046	6.88978	7.58149	10.7197	10.0429	9.09937	6.70071	4.71618	6.06213	179.023	145.027
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Blast
[Close]
BLAST of TCONS_00000822 vs. Swiss-Prot (Human)
Match: SOX7 (Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.653e-26
Identity = 49/84 (58.33%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  696 TKDRIRRPLNCFMVFSHLERKRVAEEHPELHNADLSKILGKRWKTLSPSEKQPYIEEAERIRQLHTEIYPDYKYQPRRKNQPKK 947
            ++ RIRRP+N FMV++  ERKR+A ++P+LHNA+LSK+LGK WK L+ S+K+PY++EAER+R  H + YP+YKY+PRRK Q K+
Sbjct:   41 SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKR 124
The following BLAST results are available for this feature:
BLAST of TCONS_00000822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX71.653e-2658.33Transcription factor SOX-7 OS=Homo sapiens GN=SOX7... [more]
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