TCONS_00000822-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000822-protein
Unique NameTCONS_00000822-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000822-protein ID=TCONS_00000822-protein|Name=TCONS_00000822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MASKHQTQTLKELLQKPNMQTEFNKAYSLSPNGHFKYVKRQTSKMFYHGT
VHRSRLMPTKDRIRRPLNCFMVFSHLERKRVAEEHPELHNADLSKILGKR
WKTLSPSEKQPYIEEAERIRQLHTEIYPDYKYQPRRKNQPKKPGEESHQS
ESNTELSSPTNTRSETHSPSNNAMRSASSSNDMNLPPIPQPLTTPINHQN
PPNTSYQLPSYEGNLSAPNTPILTSGSHQEYPTNNNEYIDYTEHPLPQSF
PPTPTISPAAVDHQRPMFVFENRQNAFPQSKQSSPMTEQDYEANAIRWLA
CDLQQNVDQVSSPQSYQSFNEPHNYQEPYHNGNPQQFYQQNVQQQINMQD
YRNNIENMNFQQQNFPLDANANNNMVSPF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000493XLOC_000493Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000822TCONS_00000822Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 62..132
e-value: 1.8E-26
score: 104.0
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 57..164
e-value: 3.8E-31
score: 107.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 64..131
e-value: 2.0E-23
score: 82.5
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 63..131
score: 20.943
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 50..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..334
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 62..132
e-value: 1.7533E-30
score: 110.851

Blast
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BLAST of TCONS_00000822-protein vs. Swiss-Prot (Human)
Match: SOX7 (Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.767e-28
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = 0 
Query:   59 TKDRIRRPLNCFMVFSHLERKRVAEEHPELHNADLSKILGKRWKTLSPSEKQPYIEEAERIRQLHTEIYPDYKYQPRRKNQPKKPGEESHQSESNTELSSPTNTRSETHSPSNNAM 174
            ++ RIRRP+N FMV++  ERKR+A ++P+LHNA+LSK+LGK WK L+ S+K+PY++EAER+R  H + YP+YKY+PRRK Q K+  +        + LS   N   E  S S  A+
Sbjct:   41 SESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSRDQNALPEKRSGSRGAL 156
The following BLAST results are available for this feature:
BLAST of TCONS_00000822-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX72.767e-2848.28Transcription factor SOX-7 OS=Homo sapiens GN=SOX7... [more]
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