TCONS_00000266 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000266
Unique Name	TCONS_00000266
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	871

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000001:2535665..2545642-
coding sequence from alignment at sc0000001:2535665..2545642-

transcript sequence

>TCONS_00000266 ID=TCONS_00000266|Name=TCONS_00000266|organism=Clytia hemisphaerica|type=transcript|length=871bp
CCGTGCGCCCCGCCATTTTTGACCGCGCAGCGTGACTAATAAGAAATATT
ATATAGGATAAGGTAAGGAGGATTGGGTCGGGGTTGGTAAATTAGAATAT
TCGTCGTGCAAAAATGGCTTTCTTTTCTAATCGGTGTGTGAAGCCATGAG
TACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTGGCA
AAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAATGCT
AATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTATCAA
AAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAGAAG
CTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACTGCA
AATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGTCCT
CCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAACATT
TatacCACGAACTCTACTTGAAAGCCAAAggtaatgttttcaaaaataaa
cgtGTCTTGATGGAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAG
CAAAGAACTCAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTG
CACGACAAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTT
CAAGCTTATGCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAAT
TATTCCTCAATAAATTCACCACCAGAAAATTCAACGgtgtttttcctttt
tgtcctcattagaccttttcataaatacGTCACAaatatcacttgcctcg
tattcaaacgatggtttttta

Run BLAST on NCBI

protein sequence of TCONS_00000266-protein

>TCONS_00000266-protein ID=TCONS_00000266-protein|Name=TCONS_00000266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSTLRLQKRLAASVLKCGKKKIWLDPNESSEIANANSRQNIRKLVKDGLI
IKKPQVVHSRARTRANLEAKRKGRHKGYGKRHGTANARMPEKVIWMNRMR
VLRRLLRKYREQKKIDQHLYHELYLKAKGNVFKNKRVLMEYIHKKKAEKK
RSKELSDQAEARRNKVKAARQRREERQAQKRAEILQAYAKEDGATTTPSS

Run BLAST on NCBI

transcript from alignment at sc0000001:2535665..2545642-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000266 ID=TCONS_00000266|Name=TCONS_00000266|organism=Clytia hemisphaerica|type=transcript|length=9978bp|location=Sequence derived from alignment at sc0000001:2535665..2545642- (Clytia hemisphaerica)
CCGTGCGCCCCGCCATTTTTGACCGCGCAGCGTGACTAATAAGAAATATT
ATATAGGATAAGGTAAGGAGGATTGGGTCGGGGTTGGTAAATTAGAATAT
TCGTCGTGCAAAAATGGCTTTCTTTTCTAATCGGTGTGTGAAGCCATGAG
GTTCGTATCTCGATTGCTTATGTTTTATAATTTTACAATGTGATTTGAAA
ACCAAGTACCTTTACTCGACCATTCGGTATTAAACTATTCAAAGTTTGAA
TCATTTTTTGTGTTATTTTGGTGGTACTACGATGATGTTATTATTAATAA
TTTGGCTATGCTTCTTTTCGTTACAGTACCCTCAGGCTCCAGAAACGCTT
GGCCGCCAGCGTATTGAAGTGTGGCAAAAAGAAGATCTGGCTCGACCCTA
ATGAATCCTCAGAAATTGCAAATGCTAATTCACGACAAAACATTCGCAAA
CTTGTTAAAGATGGTTTGATTATCAAAAAACCACAAGTCGTACACAGTAG
AGCTCGCACACGAGCAAACTTAGAAGCTAAACGTAAAGGTAGACATAAGG
GATACGGTAAACGTCATGGTACTGCAAATGCACGTATGCCAGAAAAAGTT
ATTTGGATGAACAGAATGCGCGTCCTCCGAAGATTATTACGCAAATATCG
GGAGCAAAAGAAGATTGATCAACATTTGTAAGTTATTTTTTAAGCTGCTG
CTTTTAGTTTAAGGTTACTTAGAAAAGTAGCATTAATGTCTTCTACACAA
CCATGTTTATAACTAGTTAAAATAGCCACCTAACAGACATTTTTGTCACG
GTGTAATATAATTGGCCAAAGTGGCTAAAGTTCTTAAGGGTATTGTGTAC
CTACGACCCTGCCTATGCCCCGGACAGTCCAGGGCAAATGTCTGGGGTCT
GGGGCTCCAATTTTTGCGCCATAAATTTACCCCGGACGTANGGCTCCAAT
TTTTGCGCCATTAAATTTACCCCGGAAGAATATTTCAATGAATTAGAAAA
AAGCCCGCGCGGTCAGCGATTCTATAAAAAGCGACCGCACGGGCTGTCTG
GGGCGTCCGGGGTAGTCTCTCAAAAACAAATAATACGGACCCCGGGCACG
CATAAAAAAAACCCCGGACTGCCCGGGGCATAGGCAGGGTCTTGTGTACC
TGTACCAGCTTGTAGCTTCTGCTTGAACAGCTCATCCAACTTGCTGAATC
CGATGCTTTGACATTTCTTTGATGCTGTTTGAGTCAGCTTGTCTAAGAGT
GAAATAGTGGACAAGCACTGGTTCGTCCAGATTAGAAATAAGAGTTTTGA
CCAATAAGGGTGGTCTCGGGCAACCTCTCCTTAATGAGAAAAAAAACATA
GTCAGAATCACTCAGTTTATCTCAAAAACTGTTAACAAAAAAAACATACT
TTGTTTCAATTATTGGTTCCATTAAAGAAGGTATTTAGAGTCAATATTCA
AAACTTAGCTTAGGGTCTTGAAACATTGCTACCATTTAGGGGTCATTCAC
ATATCGATTCTTCCCACGACTAACATCAAATTAGGCGAAGGGGTGGGGGT
TGACTGTGACGTTAAGAAATTTCAACATAAATATTGATTTTTGAGATGTC
TATTCTGTGACAAATGTTACTTTCCATATTTATATTCCTTGGTTCGCTTC
GCTATTTTATAGAACAATTTTAACCAAAACAAACGGCCCTATCTTTATGT
CTCATGTTCCTTTTGTTTAGACAGTCTGAGCAGCCCTTAAATTTTGCCAA
CCATCGGTCTTTTTTGTGAAATGCTGCTATTCTGTTAATTATGATTACGG
AGATATTAATTCCAGTATTAGCCTCCTTTTCAAAAATTTTCCAACCAGGA
CATTTTTATTCCAACCCCCCCCCCCCGCTTATTAAGTTTTGAAAGTTATT
CCAATTCCCCTGGCTATTAGGTACCAGAGAGTAGTCACCTAGAATTACAC
CTTTTGAGAATTCAATTTCCAATGATTTTTGTCTAAAAGAATTCATTGAT
AAAAAGCATTAGGAGGGCGTGGGGGTCCTGACGCAGCTTTCAATGCGACC
CTGGGTAAAACGACCCCTAGTGAAAATACAACTGTTTCTTTGCTTGCATA
TTATTCTTAAGAGTAGAAAATGTATCATATATTGATTAGAATGTATTGCG
AAAGCTAAAAAAATTGTGCCTTTTTAAACTCTCAGTTTGAAATGAAAATA
AATATGGAAGTATTTAACACAAATTAAAAATTTTTGTGTTAATAAAAACC
CCCCTTAATTAAAACCAGCCGTGGTGTTATTAAAAAGCAAATAAAATTTG
TGTTAATTTTTTGCGTGTTAATTTCAAGGCCTTTAAATACTTCATATTTA
TTTTCATGTAATAAGGTACCGTATTACTTCGAATAAACGCCCGGGGCGTT
TATCAAATTTTTTTCGATTTTAGGAGGGGCGTTTAAAAGAAGGGGGCGTT
TATTAAATTANATTAAATTTTTTCGATTTTAGAAGGGGCCTTTAAAAGAA
GGGGTGTTTATTAAATTATTTTAGTCTAAAGTCGAATATTTAGAGCAAAT
ATACCCTTTGGATTAGTTCTTTGTCAGGATTTTAGTGCAAAATTTCTTTG
GCTCAACGACTAAAATTGCATCGAAAACTGCTCTGGTTACAAGAAATGAC
TAAAATCTTCCTTATTAAACCCAATCGATACTGGTACTGAAGTATTAAAG
TCACAAGTTTCATATAAACGCCCCTCCCCTTGAGGGGGCGTTCATTCGAA
GGAGGCGTTTATTTGAGGATGGCCTTTATTAAATAATTTTGCTTTAAGGA
GGGGCGTTTATTCTAAGGGGCATTTAAAAGAAGGGGGCGTTTATTCGAAG
TAATATGGTATGATCCCTGATTTCTGACTTCCCTAATTTAAATTTACAAA
CTATGCAAAATTTTCAATAGTTCAGCCTTTTTAATCAATATTGTGTTTAT
GTAATAATGCATTTATAGAACATTGACATTCTTTTGAAATAACACTTTCC
CTCTCCAATTTTATAAGCAAAAGCAGGAAGATTTTTATTTTATCCTCGTG
ATTTCTGAAATACATTCTTTTTAGATACTTCATTAAGTCAAAATTTGCAA
AATTAAATTCCTAAAAATACGAAAAATTTTAAGGAAATATTCACATGCTT
AATAGCAGTGTTGCAACTTTTCCGTCTGTAGACGGAAATCCGTCCAGCTG
TGATACAAATACACTATTTCCGTCCTTTTAGCAGTAATGATTTTTGTTCA
AAGGACTCGCTAAACCAAAGATTTTTTAACAAATTCCGTCCATAGTTACA
AAACCTGGTTGCAACACTGTAATAGACAATAGGCTTATTAATCTTTCTTT
TTTTTCAGATACCACGAACTCTACTTGAAAGCCAAAGGTAATGTTTTCAA
AAATAAACGTGTCTTGATGGAATATATTCACAAGAAGAAGGCTGAAAAGA
AGAGAAGCAAAGAACTCAGGTATGGAAATTAACCTTTCGGCTGATTTTTA
AGTATAATGAAGCATAATGATACAAGTATTACTTGTATCATTATGCAAAC
CTTGGAAACTCCCCCATTTATAAAGGCTTTAAGGTATTGAGTCACTTTAA
ACATCATCAATACAGAAACCATTAATGAATTTTCAAAAAAAAATATTGTT
TTATTTTTGTCGAATTGTTTATGATTTCTTTTAACCTTTTGAGGTAGGGC
TGCTAGCAGCAAACCCATCCTGTATTTTTATAATCTGACATATACTGGAC
AGTAGTCAGTCAGCTGGGGTCACATAAAAAGTGCTTTAGTTTCAAACAAA
CTTCTGTTGGTTGTTTTGAATGGTTGTTTTGAATAAATATGACCATTGTG
ATCACAAAATCATCAACCGAACAGTATCAAAATTACTAAACAGGGGTGTC
CGGGAACATTCCTGTTTTTTATGACATCACAAGCAAAACAAACAAGACGA
CTTAAAGTCGAAAATTTCGCATAATATTAGAACATCAACGACGAAAACGT
GAAACGTGACTCCGGCAGCATTATGGATTTTGAATGAAGCGTTACACAAA
ATATACACATTGTATTGTACACACAGGTCGTACCATTGAGTTTCAAGCCC
GAAGGGCTAGAGGTCAATCTCTAACCTTTTCAGGCAAGAAAAATTGAAGC
CTTAAAATATGCGCCGTATTTTTGATGGTGGATTGAATCTAGCAATTCCT
TTGTTTTCAAGTGATATATTTTTCGAAATTAAGCGGTAAATTTTAGTTTA
AAAAAACCAGGCGGGTCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTT
GGCTTCAAATCCTACCAAAGAGATTGACCTTTAGCCCTTCCGGCTTGAAA
CTCAATGGGTCGTACCCTGTTTTCTTATGAAAAATCTCAATCCATTAAAA
ACAAAATGATTCTTTAAAAAATGCGACTAAAAAATTCCTTTTTATAAGCG
TAATAAAGATATTTATATTCAGAATAAATCAGAGAACTGCAATATACAAT
TTTATAAATTTTAAAGTTTTTTGAAAATGAAGAAGAAAAAATGACACTTG
TGATTTCACTTGCGCAAAGTTTATATCAACTTCTTTCTATAAACAGTAGA
ATTTTTCTAAAATTGAGAAAATCTGTTGTATCTTTCTGATATGAATGATG
GTGCACCACCATCAAAATCATTGGGCTTTTCCAGAACAAATTTGAATATT
GCAGAATATTTTGGAGGGGGAGGGGGGTTTGAGAATATAAAATTTTTTGG
AAATTTACCCTGTGACTTTTGACCCACAAACAGCAGGTCTAACCTTCAGA
CAAGCATCAGTTGACCCCATGGACAATCAAGAGGCCACTAAAGGCAAAAA
TCAGTTTAGTAGTTGAGCTCCAGCTTCTGAACTAGAAAATGGCAGGGAAA
AACTAGCCAACTTTAGAGAAATAATACTCTGTCTTTGAGATTTTCCAAAA
TCTCAACGCAATAATCCATATTGGGGGGTTTACGATTTATTGCCTCCTTT
GAAAATTCTTTTATTGTTTTTACCGTTTTAATAGACCCTTTTAATTAGCC
TTTTATTCTATAATCAACTTTTTGTATGATATGTAGCTACATTTTTCAAC
CTAGAAATTTCATTTTTAACCTGATGATGAGCAGTTAAGACTCAAAAAGC
CTTGTTTGAATAAAATCAAATTTTTGTGTTGTTTATTTATTTTGAATCAT
GGTTTAGTGGCTTGGAGAAAGTGAAAATAATCCATACAAAAATATATTAA
GAAAAGCTCGTAACTTAAGGATACAGACTTCGGTCAAGATAGAATATGGG
GATTTATTTACCACCACCTGTCACTCAAATTTTCAGATACAAATTGACTA
AACCTTACTGAAAGTGATGCAATTATTTTCAATCTTCAATTATTTTCTGA
TGCTATACTAGAGACCTTTAATATTAATTATTTCTAGGTTGACCGTAAAT
CTTTCAAAATCATAAATTTATAAATGTTTACACACCAGTGAAAGTAGTAA
GTGCTAAAAATAGTAAAAGAATCAATATTATACGTAATCAATTAATGGCC
CTTCTAGCAAATCACAACAATGACTCCTTTATAACTCCTCTAACCGCATC
CCATTAAAACAAACCCACCCCAATCTCTTGCCAGAAATATCTCAAAATAG
ATATAGGGGAAAGATTCCATGGGAATCTCATACAAAACAAGGGTTCCAGG
GGGGGGGGGTCTTGCAGTTACTCCTTGACACTATGTGGAGTAACTGCAAT
TTTGGACATTTTCTACAGACACCACCACCCTTGCAGTTATTCCATAGTGT
ACTAACTGATTTTACCCTCAAAATTGGTGTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCATTTTACTGGGTACGTCTTATTAATGACCGTTCAAGA
GTTAAATATCTCAATCATTTTCCAAGTTTGTTAAAATATCTTTCATGCCT
TGATTGAAGAAAAAAATTACTGATTTTTTTTTTTTGACTTTTGAAAAAAA
TGTTTTGAATTTTTTTGTTTCCGGAATTTTTAAAAACCTAAAATTTTAAG
TGAAAAATTGAGAAATGTGCTCACTTAGTACACCATATCCTACCAAAATC
TACAATTGTGGGCTTAGGCACCACCCATGTTGCAGTTAGTCCACTGGTGG
AGTAACTGTTTTCCCAAATTTTGGTTTATATACCACCACGGTAGTAATTG
TCATAGTGTTTATATAATAACTGCATGACCCCCCCCTGACGGTACCACTG
GAGTTTTTAATGATTCAAAATGAAAATCCTGATTAGCAAAATGGGTATCA
AGATCGGTGAAGTTTGATTGAAGCTCAATTAGTTTGATTTATTACCGTCA
ACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACGGCAATTCAGCC
ACCATTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACC
TCCAAAGTCATTTGATTTGAGTTAAGGAACGGCGTATTTAAAAATACACG
ATTTCTCTTTCGATTTTACAGTAAGTGAAAATACAGACCAGATATGCAGC
ACAGTCCCATGTTTCGATCAATCGTCCCAAGTTAGAGCAGTTGACGGTAC
CTTGTTGCCCATTCTTTTTACACTCTGACGGTTTATTAGCAGACACCCAC
ATTAAACCTTAAAAGGACATAACAAACTGTATGCAGCGGATACAAAATCA
AAACAAATGTCACATGTCAAAATAAAAAATCAAACCAAATATGGCTATAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTGGACACGTGATTTTAA
TTGTTCTCTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTACT
TTAATGTCCCTTTAAAGAGCAGGCCAATATCTATCATCCCATCGGCCAGG
CGATGTCAATCGAACTGTTCGATTATCTAACCATGTGTTTGATTGAGCTG
ACTGATCGAACTTTTTAATCGAACTGCGATATAATCAAACATCAAACTGA
AGATTTTTCGGTAAAGTTCAATTACTATTCGATCAGGTTCGATAATCGAA
CACCTATTGTTCGATTTCGTTTGATGGTTCGATTACCAAAATTGGTTTGA
TAGGGTTCGGTTGACATCATCACCTGGGCTGGCATCGGGGAGGAAAAGCT
GAAGAAACTTTTTCTTAATCCAAACTCATCGAACAACAATCAAACTTCAT
CAGATAAAAAACTGTCATCAAACTTACATAATCAAACGAAAAAAGGAAAC
AAATATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GCGCTGTTTTTTATCTTTGTGAGTGAGTCCACCTTTAGAATATTGGCCGT
AGTACGCCCGCAGCCAAACGCCCACGCCATAATTTGCGCCCAAAAAAATT
TCTCGCCACACACACACACACACAGAAAGACTATCGTAATACTTTCGCTA
TGCGAAATTAAAAATCTAAGAAAGAAATTATTAACATATTATACACCAAT
CAACGCAATTTTCGACATAGATTGAAGAAAGGTCAGAATCAACATTTGAA
GATTTACATGAAAAGTTAAAACGGGTTGTAATCTTCTCAGAATCTAGAGT
TACATTTAGAAATCAAATATATCCACCTAAAAGTTTTCTATATTGATTTT
TGAGAGCTTTCAAATGGTGGTTTTTGATTTCCATTTTGAAGAGTTTGAAT
TTTCAGATTTTTTTCCTCCTAGACCAGGTAAAAGTTACGTTGCAGGCACA
AAGAACCTTACGTAAATTTTCAGCTATAGTTATTGACCTTTTTCTTAATC
TACGTTTGAAGACACTCACAAAATTTTTTAGTTAGCTTGGACCTATTATG
ACATCATCTGGGACTGAAAATGTTACTGGGGATGTCAGTTAAATATCTAA
TTTGGATAGGTCCGGTTGACAACTTCCAGATATTTGTACTCTGTATCCAA
TTTTTTTGTGACCTCAGCTGCCTGACTACAGGTTTTGGCTGAAATGTACA
AATACGAATTTAGCGTTGTTTAGCTGTGTTTTCGACTGTCATTTGGTGCT
GGGAAATTAAAATGAAAAGTCATAGCATGGATCTCGAGGCTAGGCCACTA
CCAACTTTTTTTATAAAAGAGCAACTTTTAGCTTGTTTCAGTTTTCAAAT
GTTTCTATTGTCATTCTTCAACCAATGCTTCAATTCTATCAAATGATATA
TCGTTAGAACGATAATTCATCCATACTTTTCTTCTATACTTTTCATCTTT
ATTTTCAACAATTTTTTTGTCTCAAAATTTGTAGTACTCTGGATTATCTT
TTCAACGGTGTATGACTTTAACAGATTTGCGTTGATTATAATCTGCTAGG
AAAAACTGAAATTGATGCACACTTAAAGCGAGTGGACTTGAAAAATACCT
GTCATTCCTAAGGCTTTGAGGAGACAAATTTGGATTTGGCTAAAGATTCT
TATGTAGAAATTTGCCTAGTATTCGATTCAATTTAGTTCAATAGAACTTA
TCGGGGTTTTTGATTTTTCTAAAAAAGCGGTGCATTGTGGGATTGTTTCG
AGTGTATTGCAATAGAAATCTCTTAGGTATTCCTCAAGGGAATTCTATTG
TAATACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATCAA
AAACTCCGATAAGGTCTATTCAAAAAGAGTCTTCCTGATCCTTATTAAGC
TTTACTGTAAGCTAGAAAAGGATTTTACGACTTGAAATCTAACTGTCATC
TTTCCTTCCTTTTTTACAGTGATCAAGCCGAAGCCAGACGTAACAAAGTC
AAGGCTGCACGACAAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGA
AATCCTTCAAGCTTATGCCAAAGAGGACGGAGCCACCACCACACCCTCAT
CCTAAATTATTCCTCAATAAATTCACCACCAGAAAATTCAACGGTGTTTT
TCCTTTTTGTCCTCATTAGACCTTTTCATAAATACGTCACAAATATCACT
TGCCTCGTATTCAAACGATGGTTTTTTA

Coding sequence (CDS) from alignment at sc0000001:2535665..2545642-

>TCONS_00000266 ID=TCONS_00000266|Name=TCONS_00000266|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0000001:2535665..2545642- (Clytia hemisphaerica)
TGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCACGACAAAGGC
GAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAAGCTTATGCC
AAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACCACGAACTCT
ACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTCTTGATGGAA
TATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGAACTCAGTAC
CCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTGGCAAAA
AGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAATGCTAAT
TCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTATCAAAAA
ACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAGAAGCTA
AACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACTGCAAAT
GCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGTCCTCCG
AAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAACATTTAT
GAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCACGACAAA
GGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAAGCTTAT
GCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACCACGAAC
TCTACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTCTTGATG
GAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGAACTCAG
TACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTGGCA
AAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAATGCT
AATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTATCAA
AAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAGAAG
CTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACTGCA
AATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGTCCT
CCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAACATT
TATGAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCACGAC
AAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAAGCT
TATGCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACCACG
AACTCTACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTCTTG
ATGGAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGAACT
CAGTACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTG
GCAAAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAAT
GCTAATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTAT
CAAAAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAG
AAGCTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACT
GCAAATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGT
CCTCCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAAC
ATTTATGAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCAC
GACAAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAA
GCTTATGCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACC
ACGAACTCTACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTC
TTGATGGAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGA
ACTCAGTACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGT
GTGGCAAAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCA
AATGCTAATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGAT
TATCAAAAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACT
TAGAAGCTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGT
ACTGCAAATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCG
CGTCCTCCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATC
AACATTTATGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000143	XLOC_000143	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000266-exon-sc0000001-1575043694:2545493..2545642	TCONS_00000266-exon-sc0000001-1575043694:2545493..2545642	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1575043694:2544966..2545316	TCONS_00000266-exon-sc0000001-1575043694:2544966..2545316	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1575043694:2542174..2542284	TCONS_00000266-exon-sc0000001-1575043694:2542174..2542284	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1575043694:2535665..2535923	TCONS_00000266-exon-sc0000001-1575043694:2535665..2535923	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1510915933:2545493..2545642	TCONS_00000266-exon-sc0000001-1510915933:2545493..2545642	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1510915933:2544966..2545316	TCONS_00000266-exon-sc0000001-1510915933:2544966..2545316	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1510915933:2542174..2542284	TCONS_00000266-exon-sc0000001-1510915933:2542174..2542284	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1510915933:2535665..2535923	TCONS_00000266-exon-sc0000001-1510915933:2535665..2535923	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1491911889:2545493..2545642	TCONS_00000266-exon-sc0000001-1491911889:2545493..2545642	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1491911889:2544966..2545316	TCONS_00000266-exon-sc0000001-1491911889:2544966..2545316	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1491911889:2542174..2542284	TCONS_00000266-exon-sc0000001-1491911889:2542174..2542284	Clytia hemisphaerica	exon
TCONS_00000266-exon-sc0000001-1491911889:2535665..2535923	TCONS_00000266-exon-sc0000001-1491911889:2535665..2535923	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000266-protein	TCONS_00000266-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:2535665..2545642 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2266.82	2269.77	2445.26	2587.14	2796.91	2242.19	2774.49	2918.09	3205.6	3058.23	3431.76	4036.74	4301.12	4438.59	4222.96	4529.34	4459.46	4859.95	2260.54	2441.02	3951.61	4001.93	3010.12	2829.31	3292.39	3514.09	3837.24	3647.79	2691.29	2725.03

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000196	Ribosomal_L19/L19e
IPR015973	Ribosomal_L19/L19e_dom2
IPR015972	Ribosomal_L19/L19e_dom1
IPR015974	Ribosomal_L19/L19e_dom3
IPR023638	Ribosomal_L19/L19e_CS
IPR033935	Ribosomal_L19_euka

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Blast

[Close]

BLAST of TCONS_00000266 vs. Swiss-Prot (Human)
Match: RL19 (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.211e-65
Identity = 141/192 (73.44%), Postives = 164/192 (85.42%), Query Frame = 2

Query:  146 MSTLRLQKRLAASVLKCGKKKIWLDPNESSEIANANSRQNIRKLVKDGLIIKKPQVVHSRARTRANLEAXXXXXXXXXXXXXXTANARMPEKVIWMNXXXXXXXXXXXXXEQKKIDQHLYHELYLKAKGNVFKNKRVLMEYIHXXXXXXXXXXELSDQAEARRNKVXXXXXXXXXXXXXXXXXILQAYAKED 721
            MS LRLQKRLA+SVL+CGKKK+WLDPNE++EIANANSRQ IRKL+KDGLII+KP  VHSRAR R N  A+RKGRH G GKR GTANARMPEKV WM RMR+LRRLLR+YRE KKID+H+YH LYLK KGNVFKNKR+LME+IHK KA+K R K L+DQAEARR+K K AR+RREER   K+ EI++  +KE+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEE 192

The following BLAST results are available for this feature:

BLAST of TCONS_00000266 vs. Swiss-Prot (Human)

BLAST of TCONS_00000266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RL19	6.211e-65	73.44	60S ribosomal protein L19 OS=Homo sapiens GN=RPL19...	[more]

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TCONS_00000266 (transcript) - C. hemisphaerica