TCONS_00000266-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000266-protein
Unique NameTCONS_00000266-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000266-protein ID=TCONS_00000266-protein|Name=TCONS_00000266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSTLRLQKRLAASVLKCGKKKIWLDPNESSEIANANSRQNIRKLVKDGLI
IKKPQVVHSRARTRANLEAKRKGRHKGYGKRHGTANARMPEKVIWMNRMR
VLRRLLRKYREQKKIDQHLYHELYLKAKGNVFKNKRVLMEYIHKKKAEKK
RSKELSDQAEARRNKVKAARQRREERQAQKRAEILQAYAKEDGATTTPSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000143XLOC_000143Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000266TCONS_00000266Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000196Ribosomal_L19/L19e
IPR015973Ribosomal_L19/L19e_dom2
IPR015972Ribosomal_L19/L19e_dom1
IPR015974Ribosomal_L19/L19e_dom3
IPR023638Ribosomal_L19/L19e_CS
IPR033935Ribosomal_L19_euka
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0022625cytosolic large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 142..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..200
IPR000196Ribosomal protein L19/L19eSMARTSM01416Ribosomal_L19e_2coord: 3..146
e-value: 4.1E-99
score: 345.3
IPR000196Ribosomal protein L19/L19ePFAMPF01280Ribosomal_L19ecoord: 4..146
e-value: 3.3E-67
score: 224.9
IPR000196Ribosomal protein L19/L19eHAMAPMF_01475Ribosomal_L19ecoord: 3..149
score: 20.826
IPR000196Ribosomal protein L19/L19eSUPERFAMILY48140Ribosomal protein L19 (L19e)coord: 3..144
IPR015973Ribosomal protein L19/L19e, domain 2GENE3D1.20.5.560coord: 59..88
e-value: 3.3E-13
score: 48.9
IPR015972Ribosomal protein L19/L19e, domain 1GENE3D1.10.1650.10coord: 2..54
e-value: 2.7E-31
score: 106.8
IPR015974Ribosomal protein L19/L19e, domain 3GENE3D1.10.1200.60coord: 92..146
e-value: 6.6E-31
score: 105.5
IPR023638Ribosomal protein L19/L19e conserved sitePROSITEPS00526RIBOSOMAL_L19Ecoord: 7..26
IPR033935Ribosomal protein L19, eukaryoticCDDcd01417Ribosomal_L19e_Ecoord: 4..167
e-value: 7.86628E-74
score: 221.84

Blast
[Close]
BLAST of TCONS_00000266-protein vs. Swiss-Prot (Human)
Match: RL19 (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 6.373e-90
Identity = 141/192 (73.44%), Postives = 164/192 (85.42%), Query Frame = 0 
Query:    1 MSTLRLQKRLAASVLKCGKKKIWLDPNESSEIANANSRQNIRKLVKDGLIIKKPQVVHSRARTRANLEAKRKGRHKGYGKRHGTANARMPEKVIWMNRMRVLRRLLRKYREQKKIDQHLYHELYLKAKGNVFKNKRVLMEYIHKKKAEKKRSKELSDQAEARRNKVKAARQRREERQAQKRAEILQAYAKED 192
            MS LRLQKRLA+SVL+CGKKK+WLDPNE++EIANANSRQ IRKL+KDGLII+KP  VHSRAR R N  A+RKGRH G GKR GTANARMPEKV WM RMR+LRRLLR+YRE KKID+H+YH LYLK KGNVFKNKR+LME+IHK KA+K R K L+DQAEARR+K K AR+RREER   K+ EI++  +KE+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEE 192
The following BLAST results are available for this feature:
BLAST of TCONS_00000266-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL196.373e-9073.4460S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
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