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TCONS_00000266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000266
Unique NameTCONS_00000266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000266 ID=TCONS_00000266|Name=TCONS_00000266|organism=Clytia hemisphaerica|type=transcript|length=871bp
CCGTGCGCCCCGCCATTTTTGACCGCGCAGCGTGACTAATAAGAAATATT
ATATAGGATAAGGTAAGGAGGATTGGGTCGGGGTTGGTAAATTAGAATAT
TCGTCGTGCAAAAATGGCTTTCTTTTCTAATCGGTGTGTGAAGCCATGAG
TACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTGGCA
AAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAATGCT
AATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTATCAA
AAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAGAAG
CTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACTGCA
AATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGTCCT
CCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAACATT
TatacCACGAACTCTACTTGAAAGCCAAAggtaatgttttcaaaaataaa
cgtGTCTTGATGGAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAG
CAAAGAACTCAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTG
CACGACAAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTT
CAAGCTTATGCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAAT
TATTCCTCAATAAATTCACCACCAGAAAATTCAACGgtgtttttcctttt
tgtcctcattagaccttttcataaatacGTCACAaatatcacttgcctcg
tattcaaacgatggtttttta
Run BLAST on NCBI

protein sequence of TCONS_00000266-protein

>TCONS_00000266-protein ID=TCONS_00000266-protein|Name=TCONS_00000266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSTLRLQKRLAASVLKCGKKKIWLDPNESSEIANANSRQNIRKLVKDGLI
IKKPQVVHSRARTRANLEAKRKGRHKGYGKRHGTANARMPEKVIWMNRMR
VLRRLLRKYREQKKIDQHLYHELYLKAKGNVFKNKRVLMEYIHKKKAEKK
RSKELSDQAEARRNKVKAARQRREERQAQKRAEILQAYAKEDGATTTPSS
Run BLAST on NCBI

transcript from alignment at sc0000001:2535665..2545642-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000266 ID=TCONS_00000266|Name=TCONS_00000266|organism=Clytia hemisphaerica|type=transcript|length=9978bp|location=Sequence derived from alignment at sc0000001:2535665..2545642- (Clytia hemisphaerica)
CCGTGCGCCCCGCCATTTTTGACCGCGCAGCGTGACTAATAAGAAATATT ATATAGGATAAGGTAAGGAGGATTGGGTCGGGGTTGGTAAATTAGAATAT TCGTCGTGCAAAAATGGCTTTCTTTTCTAATCGGTGTGTGAAGCCATGAG GTTCGTATCTCGATTGCTTATGTTTTATAATTTTACAATGTGATTTGAAA ACCAAGTACCTTTACTCGACCATTCGGTATTAAACTATTCAAAGTTTGAA TCATTTTTTGTGTTATTTTGGTGGTACTACGATGATGTTATTATTAATAA TTTGGCTATGCTTCTTTTCGTTACAGTACCCTCAGGCTCCAGAAACGCTT GGCCGCCAGCGTATTGAAGTGTGGCAAAAAGAAGATCTGGCTCGACCCTA ATGAATCCTCAGAAATTGCAAATGCTAATTCACGACAAAACATTCGCAAA CTTGTTAAAGATGGTTTGATTATCAAAAAACCACAAGTCGTACACAGTAG AGCTCGCACACGAGCAAACTTAGAAGCTAAACGTAAAGGTAGACATAAGG GATACGGTAAACGTCATGGTACTGCAAATGCACGTATGCCAGAAAAAGTT ATTTGGATGAACAGAATGCGCGTCCTCCGAAGATTATTACGCAAATATCG GGAGCAAAAGAAGATTGATCAACATTTGTAAGTTATTTTTTAAGCTGCTG CTTTTAGTTTAAGGTTACTTAGAAAAGTAGCATTAATGTCTTCTACACAA CCATGTTTATAACTAGTTAAAATAGCCACCTAACAGACATTTTTGTCACG GTGTAATATAATTGGCCAAAGTGGCTAAAGTTCTTAAGGGTATTGTGTAC CTACGACCCTGCCTATGCCCCGGACAGTCCAGGGCAAATGTCTGGGGTCT GGGGCTCCAATTTTTGCGCCATAAATTTACCCCGGACGTANGGCTCCAAT TTTTGCGCCATTAAATTTACCCCGGAAGAATATTTCAATGAATTAGAAAA AAGCCCGCGCGGTCAGCGATTCTATAAAAAGCGACCGCACGGGCTGTCTG GGGCGTCCGGGGTAGTCTCTCAAAAACAAATAATACGGACCCCGGGCACG CATAAAAAAAACCCCGGACTGCCCGGGGCATAGGCAGGGTCTTGTGTACC TGTACCAGCTTGTAGCTTCTGCTTGAACAGCTCATCCAACTTGCTGAATC CGATGCTTTGACATTTCTTTGATGCTGTTTGAGTCAGCTTGTCTAAGAGT GAAATAGTGGACAAGCACTGGTTCGTCCAGATTAGAAATAAGAGTTTTGA CCAATAAGGGTGGTCTCGGGCAACCTCTCCTTAATGAGAAAAAAAACATA GTCAGAATCACTCAGTTTATCTCAAAAACTGTTAACAAAAAAAACATACT TTGTTTCAATTATTGGTTCCATTAAAGAAGGTATTTAGAGTCAATATTCA AAACTTAGCTTAGGGTCTTGAAACATTGCTACCATTTAGGGGTCATTCAC ATATCGATTCTTCCCACGACTAACATCAAATTAGGCGAAGGGGTGGGGGT TGACTGTGACGTTAAGAAATTTCAACATAAATATTGATTTTTGAGATGTC TATTCTGTGACAAATGTTACTTTCCATATTTATATTCCTTGGTTCGCTTC GCTATTTTATAGAACAATTTTAACCAAAACAAACGGCCCTATCTTTATGT CTCATGTTCCTTTTGTTTAGACAGTCTGAGCAGCCCTTAAATTTTGCCAA CCATCGGTCTTTTTTGTGAAATGCTGCTATTCTGTTAATTATGATTACGG AGATATTAATTCCAGTATTAGCCTCCTTTTCAAAAATTTTCCAACCAGGA CATTTTTATTCCAACCCCCCCCCCCCGCTTATTAAGTTTTGAAAGTTATT CCAATTCCCCTGGCTATTAGGTACCAGAGAGTAGTCACCTAGAATTACAC CTTTTGAGAATTCAATTTCCAATGATTTTTGTCTAAAAGAATTCATTGAT AAAAAGCATTAGGAGGGCGTGGGGGTCCTGACGCAGCTTTCAATGCGACC CTGGGTAAAACGACCCCTAGTGAAAATACAACTGTTTCTTTGCTTGCATA TTATTCTTAAGAGTAGAAAATGTATCATATATTGATTAGAATGTATTGCG AAAGCTAAAAAAATTGTGCCTTTTTAAACTCTCAGTTTGAAATGAAAATA AATATGGAAGTATTTAACACAAATTAAAAATTTTTGTGTTAATAAAAACC CCCCTTAATTAAAACCAGCCGTGGTGTTATTAAAAAGCAAATAAAATTTG TGTTAATTTTTTGCGTGTTAATTTCAAGGCCTTTAAATACTTCATATTTA TTTTCATGTAATAAGGTACCGTATTACTTCGAATAAACGCCCGGGGCGTT TATCAAATTTTTTTCGATTTTAGGAGGGGCGTTTAAAAGAAGGGGGCGTT TATTAAATTANATTAAATTTTTTCGATTTTAGAAGGGGCCTTTAAAAGAA GGGGTGTTTATTAAATTATTTTAGTCTAAAGTCGAATATTTAGAGCAAAT ATACCCTTTGGATTAGTTCTTTGTCAGGATTTTAGTGCAAAATTTCTTTG GCTCAACGACTAAAATTGCATCGAAAACTGCTCTGGTTACAAGAAATGAC TAAAATCTTCCTTATTAAACCCAATCGATACTGGTACTGAAGTATTAAAG TCACAAGTTTCATATAAACGCCCCTCCCCTTGAGGGGGCGTTCATTCGAA GGAGGCGTTTATTTGAGGATGGCCTTTATTAAATAATTTTGCTTTAAGGA GGGGCGTTTATTCTAAGGGGCATTTAAAAGAAGGGGGCGTTTATTCGAAG TAATATGGTATGATCCCTGATTTCTGACTTCCCTAATTTAAATTTACAAA CTATGCAAAATTTTCAATAGTTCAGCCTTTTTAATCAATATTGTGTTTAT GTAATAATGCATTTATAGAACATTGACATTCTTTTGAAATAACACTTTCC CTCTCCAATTTTATAAGCAAAAGCAGGAAGATTTTTATTTTATCCTCGTG ATTTCTGAAATACATTCTTTTTAGATACTTCATTAAGTCAAAATTTGCAA AATTAAATTCCTAAAAATACGAAAAATTTTAAGGAAATATTCACATGCTT AATAGCAGTGTTGCAACTTTTCCGTCTGTAGACGGAAATCCGTCCAGCTG TGATACAAATACACTATTTCCGTCCTTTTAGCAGTAATGATTTTTGTTCA AAGGACTCGCTAAACCAAAGATTTTTTAACAAATTCCGTCCATAGTTACA AAACCTGGTTGCAACACTGTAATAGACAATAGGCTTATTAATCTTTCTTT TTTTTCAGATACCACGAACTCTACTTGAAAGCCAAAGGTAATGTTTTCAA AAATAAACGTGTCTTGATGGAATATATTCACAAGAAGAAGGCTGAAAAGA AGAGAAGCAAAGAACTCAGGTATGGAAATTAACCTTTCGGCTGATTTTTA AGTATAATGAAGCATAATGATACAAGTATTACTTGTATCATTATGCAAAC CTTGGAAACTCCCCCATTTATAAAGGCTTTAAGGTATTGAGTCACTTTAA ACATCATCAATACAGAAACCATTAATGAATTTTCAAAAAAAAATATTGTT TTATTTTTGTCGAATTGTTTATGATTTCTTTTAACCTTTTGAGGTAGGGC TGCTAGCAGCAAACCCATCCTGTATTTTTATAATCTGACATATACTGGAC AGTAGTCAGTCAGCTGGGGTCACATAAAAAGTGCTTTAGTTTCAAACAAA CTTCTGTTGGTTGTTTTGAATGGTTGTTTTGAATAAATATGACCATTGTG ATCACAAAATCATCAACCGAACAGTATCAAAATTACTAAACAGGGGTGTC CGGGAACATTCCTGTTTTTTATGACATCACAAGCAAAACAAACAAGACGA CTTAAAGTCGAAAATTTCGCATAATATTAGAACATCAACGACGAAAACGT GAAACGTGACTCCGGCAGCATTATGGATTTTGAATGAAGCGTTACACAAA ATATACACATTGTATTGTACACACAGGTCGTACCATTGAGTTTCAAGCCC GAAGGGCTAGAGGTCAATCTCTAACCTTTTCAGGCAAGAAAAATTGAAGC CTTAAAATATGCGCCGTATTTTTGATGGTGGATTGAATCTAGCAATTCCT TTGTTTTCAAGTGATATATTTTTCGAAATTAAGCGGTAAATTTTAGTTTA AAAAAACCAGGCGGGTCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTT GGCTTCAAATCCTACCAAAGAGATTGACCTTTAGCCCTTCCGGCTTGAAA CTCAATGGGTCGTACCCTGTTTTCTTATGAAAAATCTCAATCCATTAAAA ACAAAATGATTCTTTAAAAAATGCGACTAAAAAATTCCTTTTTATAAGCG TAATAAAGATATTTATATTCAGAATAAATCAGAGAACTGCAATATACAAT TTTATAAATTTTAAAGTTTTTTGAAAATGAAGAAGAAAAAATGACACTTG TGATTTCACTTGCGCAAAGTTTATATCAACTTCTTTCTATAAACAGTAGA ATTTTTCTAAAATTGAGAAAATCTGTTGTATCTTTCTGATATGAATGATG GTGCACCACCATCAAAATCATTGGGCTTTTCCAGAACAAATTTGAATATT GCAGAATATTTTGGAGGGGGAGGGGGGTTTGAGAATATAAAATTTTTTGG AAATTTACCCTGTGACTTTTGACCCACAAACAGCAGGTCTAACCTTCAGA CAAGCATCAGTTGACCCCATGGACAATCAAGAGGCCACTAAAGGCAAAAA TCAGTTTAGTAGTTGAGCTCCAGCTTCTGAACTAGAAAATGGCAGGGAAA AACTAGCCAACTTTAGAGAAATAATACTCTGTCTTTGAGATTTTCCAAAA TCTCAACGCAATAATCCATATTGGGGGGTTTACGATTTATTGCCTCCTTT GAAAATTCTTTTATTGTTTTTACCGTTTTAATAGACCCTTTTAATTAGCC TTTTATTCTATAATCAACTTTTTGTATGATATGTAGCTACATTTTTCAAC CTAGAAATTTCATTTTTAACCTGATGATGAGCAGTTAAGACTCAAAAAGC CTTGTTTGAATAAAATCAAATTTTTGTGTTGTTTATTTATTTTGAATCAT GGTTTAGTGGCTTGGAGAAAGTGAAAATAATCCATACAAAAATATATTAA GAAAAGCTCGTAACTTAAGGATACAGACTTCGGTCAAGATAGAATATGGG GATTTATTTACCACCACCTGTCACTCAAATTTTCAGATACAAATTGACTA AACCTTACTGAAAGTGATGCAATTATTTTCAATCTTCAATTATTTTCTGA TGCTATACTAGAGACCTTTAATATTAATTATTTCTAGGTTGACCGTAAAT CTTTCAAAATCATAAATTTATAAATGTTTACACACCAGTGAAAGTAGTAA GTGCTAAAAATAGTAAAAGAATCAATATTATACGTAATCAATTAATGGCC CTTCTAGCAAATCACAACAATGACTCCTTTATAACTCCTCTAACCGCATC CCATTAAAACAAACCCACCCCAATCTCTTGCCAGAAATATCTCAAAATAG ATATAGGGGAAAGATTCCATGGGAATCTCATACAAAACAAGGGTTCCAGG GGGGGGGGGTCTTGCAGTTACTCCTTGACACTATGTGGAGTAACTGCAAT TTTGGACATTTTCTACAGACACCACCACCCTTGCAGTTATTCCATAGTGT ACTAACTGATTTTACCCTCAAAATTGGTGTTNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCATTTTACTGGGTACGTCTTATTAATGACCGTTCAAGA GTTAAATATCTCAATCATTTTCCAAGTTTGTTAAAATATCTTTCATGCCT TGATTGAAGAAAAAAATTACTGATTTTTTTTTTTTGACTTTTGAAAAAAA TGTTTTGAATTTTTTTGTTTCCGGAATTTTTAAAAACCTAAAATTTTAAG TGAAAAATTGAGAAATGTGCTCACTTAGTACACCATATCCTACCAAAATC TACAATTGTGGGCTTAGGCACCACCCATGTTGCAGTTAGTCCACTGGTGG AGTAACTGTTTTCCCAAATTTTGGTTTATATACCACCACGGTAGTAATTG TCATAGTGTTTATATAATAACTGCATGACCCCCCCCTGACGGTACCACTG GAGTTTTTAATGATTCAAAATGAAAATCCTGATTAGCAAAATGGGTATCA AGATCGGTGAAGTTTGATTGAAGCTCAATTAGTTTGATTTATTACCGTCA ACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACGGCAATTCAGCC ACCATTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACC TCCAAAGTCATTTGATTTGAGTTAAGGAACGGCGTATTTAAAAATACACG ATTTCTCTTTCGATTTTACAGTAAGTGAAAATACAGACCAGATATGCAGC ACAGTCCCATGTTTCGATCAATCGTCCCAAGTTAGAGCAGTTGACGGTAC CTTGTTGCCCATTCTTTTTACACTCTGACGGTTTATTAGCAGACACCCAC ATTAAACCTTAAAAGGACATAACAAACTGTATGCAGCGGATACAAAATCA AAACAAATGTCACATGTCAAAATAAAAAATCAAACCAAATATGGCTATAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTGGACACGTGATTTTAA TTGTTCTCTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTACT TTAATGTCCCTTTAAAGAGCAGGCCAATATCTATCATCCCATCGGCCAGG CGATGTCAATCGAACTGTTCGATTATCTAACCATGTGTTTGATTGAGCTG ACTGATCGAACTTTTTAATCGAACTGCGATATAATCAAACATCAAACTGA AGATTTTTCGGTAAAGTTCAATTACTATTCGATCAGGTTCGATAATCGAA CACCTATTGTTCGATTTCGTTTGATGGTTCGATTACCAAAATTGGTTTGA TAGGGTTCGGTTGACATCATCACCTGGGCTGGCATCGGGGAGGAAAAGCT GAAGAAACTTTTTCTTAATCCAAACTCATCGAACAACAATCAAACTTCAT CAGATAAAAAACTGTCATCAAACTTACATAATCAAACGAAAAAAGGAAAC AAATATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA GCGCTGTTTTTTATCTTTGTGAGTGAGTCCACCTTTAGAATATTGGCCGT AGTACGCCCGCAGCCAAACGCCCACGCCATAATTTGCGCCCAAAAAAATT TCTCGCCACACACACACACACACAGAAAGACTATCGTAATACTTTCGCTA TGCGAAATTAAAAATCTAAGAAAGAAATTATTAACATATTATACACCAAT CAACGCAATTTTCGACATAGATTGAAGAAAGGTCAGAATCAACATTTGAA GATTTACATGAAAAGTTAAAACGGGTTGTAATCTTCTCAGAATCTAGAGT TACATTTAGAAATCAAATATATCCACCTAAAAGTTTTCTATATTGATTTT TGAGAGCTTTCAAATGGTGGTTTTTGATTTCCATTTTGAAGAGTTTGAAT TTTCAGATTTTTTTCCTCCTAGACCAGGTAAAAGTTACGTTGCAGGCACA AAGAACCTTACGTAAATTTTCAGCTATAGTTATTGACCTTTTTCTTAATC TACGTTTGAAGACACTCACAAAATTTTTTAGTTAGCTTGGACCTATTATG ACATCATCTGGGACTGAAAATGTTACTGGGGATGTCAGTTAAATATCTAA TTTGGATAGGTCCGGTTGACAACTTCCAGATATTTGTACTCTGTATCCAA TTTTTTTGTGACCTCAGCTGCCTGACTACAGGTTTTGGCTGAAATGTACA AATACGAATTTAGCGTTGTTTAGCTGTGTTTTCGACTGTCATTTGGTGCT GGGAAATTAAAATGAAAAGTCATAGCATGGATCTCGAGGCTAGGCCACTA CCAACTTTTTTTATAAAAGAGCAACTTTTAGCTTGTTTCAGTTTTCAAAT GTTTCTATTGTCATTCTTCAACCAATGCTTCAATTCTATCAAATGATATA TCGTTAGAACGATAATTCATCCATACTTTTCTTCTATACTTTTCATCTTT ATTTTCAACAATTTTTTTGTCTCAAAATTTGTAGTACTCTGGATTATCTT TTCAACGGTGTATGACTTTAACAGATTTGCGTTGATTATAATCTGCTAGG AAAAACTGAAATTGATGCACACTTAAAGCGAGTGGACTTGAAAAATACCT GTCATTCCTAAGGCTTTGAGGAGACAAATTTGGATTTGGCTAAAGATTCT TATGTAGAAATTTGCCTAGTATTCGATTCAATTTAGTTCAATAGAACTTA TCGGGGTTTTTGATTTTTCTAAAAAAGCGGTGCATTGTGGGATTGTTTCG AGTGTATTGCAATAGAAATCTCTTAGGTATTCCTCAAGGGAATTCTATTG TAATACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATCAA AAACTCCGATAAGGTCTATTCAAAAAGAGTCTTCCTGATCCTTATTAAGC TTTACTGTAAGCTAGAAAAGGATTTTACGACTTGAAATCTAACTGTCATC TTTCCTTCCTTTTTTACAGTGATCAAGCCGAAGCCAGACGTAACAAAGTC AAGGCTGCACGACAAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGA AATCCTTCAAGCTTATGCCAAAGAGGACGGAGCCACCACCACACCCTCAT CCTAAATTATTCCTCAATAAATTCACCACCAGAAAATTCAACGGTGTTTT TCCTTTTTGTCCTCATTAGACCTTTTCATAAATACGTCACAAATATCACT TGCCTCGTATTCAAACGATGGTTTTTTA

Coding sequence (CDS) from alignment at sc0000001:2535665..2545642-

>TCONS_00000266 ID=TCONS_00000266|Name=TCONS_00000266|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0000001:2535665..2545642- (Clytia hemisphaerica)
TGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCACGACAAAGGC
GAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAAGCTTATGCC
AAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACCACGAACTCT
ACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTCTTGATGGAA
TATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGAACTCAGTAC
CCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTGGCAAAA
AGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAATGCTAAT
TCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTATCAAAAA
ACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAGAAGCTA
AACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACTGCAAAT
GCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGTCCTCCG
AAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAACATTTAT
GAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCACGACAAA
GGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAAGCTTAT
GCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACCACGAAC
TCTACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTCTTGATG
GAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGAACTCAG
TACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTGGCA
AAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAATGCT
AATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTATCAA
AAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAGAAG
CTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACTGCA
AATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGTCCT
CCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAACATT
TATGAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCACGAC
AAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAAGCT
TATGCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACCACG
AACTCTACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTCTTG
ATGGAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGAACT
CAGTACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGTGTG
GCAAAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCAAAT
GCTAATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGATTAT
CAAAAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACTTAG
AAGCTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGTACT
GCAAATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCGCGT
CCTCCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATCAAC
ATTTATGAGTGATCAAGCCGAAGCCAGACGTAACAAAGTCAAGGCTGCAC
GACAAAGGCGAGAAGAACGTCAAGCACAAAAACGTGCTGAAATCCTTCAA
GCTTATGCCAAAGAGGACGGAGCCACCACCACACCCTCATCCTAAATACC
ACGAACTCTACTTGAAAGCCAAAGGTAATGTTTTCAAAAATAAACGTGTC
TTGATGGAATATATTCACAAGAAGAAGGCTGAAAAGAAGAGAAGCAAAGA
ACTCAGTACCCTCAGGCTCCAGAAACGCTTGGCCGCCAGCGTATTGAAGT
GTGGCAAAAAGAAGATCTGGCTCGACCCTAATGAATCCTCAGAAATTGCA
AATGCTAATTCACGACAAAACATTCGCAAACTTGTTAAAGATGGTTTGAT
TATCAAAAAACCACAAGTCGTACACAGTAGAGCTCGCACACGAGCAAACT
TAGAAGCTAAACGTAAAGGTAGACATAAGGGATACGGTAAACGTCATGGT
ACTGCAAATGCACGTATGCCAGAAAAAGTTATTTGGATGAACAGAATGCG
CGTCCTCCGAAGATTATTACGCAAATATCGGGAGCAAAAGAAGATTGATC
AACATTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000143XLOC_000143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000266-exon-sc0000001-1575043694:2545493..2545642TCONS_00000266-exon-sc0000001-1575043694:2545493..2545642Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1575043694:2544966..2545316TCONS_00000266-exon-sc0000001-1575043694:2544966..2545316Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1575043694:2542174..2542284TCONS_00000266-exon-sc0000001-1575043694:2542174..2542284Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1575043694:2535665..2535923TCONS_00000266-exon-sc0000001-1575043694:2535665..2535923Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1510915933:2545493..2545642TCONS_00000266-exon-sc0000001-1510915933:2545493..2545642Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1510915933:2544966..2545316TCONS_00000266-exon-sc0000001-1510915933:2544966..2545316Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1510915933:2542174..2542284TCONS_00000266-exon-sc0000001-1510915933:2542174..2542284Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1510915933:2535665..2535923TCONS_00000266-exon-sc0000001-1510915933:2535665..2535923Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1491911889:2545493..2545642TCONS_00000266-exon-sc0000001-1491911889:2545493..2545642Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1491911889:2544966..2545316TCONS_00000266-exon-sc0000001-1491911889:2544966..2545316Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1491911889:2542174..2542284TCONS_00000266-exon-sc0000001-1491911889:2542174..2542284Clytia hemisphaericaexon
TCONS_00000266-exon-sc0000001-1491911889:2535665..2535923TCONS_00000266-exon-sc0000001-1491911889:2535665..2535923Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000266-proteinTCONS_00000266-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2535665..2545642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2266.82 2269.77 2445.26 2587.14 2796.91 2242.19 2774.49 2918.09 3205.6 3058.23 3431.76 4036.74 4301.12 4438.59 4222.96 4529.34 4459.46 4859.95 2260.54 2441.02 3951.61 4001.93 3010.12 2829.31 3292.39 3514.09 3837.24 3647.79 2691.29 2725.03
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000196Ribosomal_L19/L19e
IPR015973Ribosomal_L19/L19e_dom2
IPR015972Ribosomal_L19/L19e_dom1
IPR015974Ribosomal_L19/L19e_dom3
IPR023638Ribosomal_L19/L19e_CS
IPR033935Ribosomal_L19_euka
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0022625cytosolic large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
BLAST of TCONS_00000266 vs. Swiss-Prot (Human)
Match: RL19 (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.211e-65
Identity = 141/192 (73.44%), Postives = 164/192 (85.42%), Query Frame = 2
Query:  146 MSTLRLQKRLAASVLKCGKKKIWLDPNESSEIANANSRQNIRKLVKDGLIIKKPQVVHSRARTRANLEAXXXXXXXXXXXXXXTANARMPEKVIWMNXXXXXXXXXXXXXEQKKIDQHLYHELYLKAKGNVFKNKRVLMEYIHXXXXXXXXXXELSDQAEARRNKVXXXXXXXXXXXXXXXXXILQAYAKED 721
            MS LRLQKRLA+SVL+CGKKK+WLDPNE++EIANANSRQ IRKL+KDGLII+KP  VHSRAR R N  A+RKGRH G GKR GTANARMPEKV WM RMR+LRRLLR+YRE KKID+H+YH LYLK KGNVFKNKR+LME+IHK KA+K R K L+DQAEARR+K K AR+RREER   K+ EI++  +KE+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEE 192          
The following BLAST results are available for this feature:
BLAST of TCONS_00000266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL196.211e-6573.4460S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
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