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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000069 ID=TCONS_00000069|Name=TCONS_00000069|organism=Clytia hemisphaerica|type=transcript|length=1710bp
CTTGTGTCAAATTTCAAGATGGAAATTACCAAGTTTAGCGTTTTATGGAC
AGAGGTTGACAGAAATAGAGCAGCACAGCGGCCTTCGCTCAGCATGTTCA
TAGCAAACGATACAAGTACACCTTCTACACACGTCCGAAGAAGAGGCTCT
GTACAAAGTATAAATTCGGACACTGACTCACGTGGCGTGTATGATCAAAA
ACAATACAAACGACGACGTAGAAGAACCTGGGAACGAGGTGAAACGGAAA
ACTCGTTGAAACGAAACCCGAATAATGCACCGAGGATTCGGATCAATGTT
CGGGGACGGAAATATGAAACGTACATAGacACACTTGACCGTTTTCCAGA
CACGTTACTAGGCAACAAAGAACTTCGTAACCAATATTACAATGAACGTA
AAGAAGAAATTGTCTTGGGTAGAAATTATGAAGTCTTCGAAGCCGTGCTC
TTCTATTAccaatcaaatgggatcttggCAAGACCAGCTTGGGTTAgcga
aaaagattttgaaaaagaactaaaGTTTTATCAACTGCAACCATCCGAAT
CTGAAAAActgagaaaagaaaaagaagctcAGAAACAAGCGGCTAAAACG
TTAGCATCAGAGCGCCGCCCTGCTTATCAGAAACTCATATGGAACCTTAT
GGAACACCCTCGTTCATCAACGCCCGCCTTCACATGCGCCATTCTCAGTA
TCTTTACAATCATCATTTCAGTCGTTGTAATCTGTCTTGAAACGATGTCC
TCGATCACAGACGATCCTGATAAAAAACGAGGCTACATTAATcgcaaagt
tttattttatcttgAAACGACAGTCATGATATGGTTTACTATGGAGTATT
TATTGAGAATCATTTCAGCTCCCAGAACGTTCAAATTCATATTATCACCT
ACAGGAATAATAGATTTGGTTGTTATATTACCTTATTACATCAATATTAT
AATCGGTGAAGAAATCCGTTCGTTTAATTTAGCGGTATTCCGTATAGTGC
GAATGTTTCGCGTTTTCAGGATTTTCAAATTAACTCGATACAGTACCGGA
TTGAAAGTGCTGGGTCGTACTATTCTTGAAAGTTTTGGACAACTTGTTGC
TCTCTTTCTCTGCTTATTTTTGTCAGCGATTCTATTctccagttgtttat
tttttatcgaACACGATAGCTTGGACCATAATTCCGAAGTGTTTATTAGT
ATTCCGGACACTTTTTGGTACGTCATCATTACTATGACTTCGGTTGGTTA
CGGAGACGTCGTTCCGCGAACGTTAATTGGACGTGTAGTTGCTGCCTTTT
GCATGGTAACAGGAATTATAGTTTTGTTATGTTTACCAACACCCGTCTTT
GTGACGCATTTCGGACGATTTTATGAAGACGTCATCAGTAGGCCGGCCAC
TGAACAAGAAGAGGATGATGAATTGACCGACTCTGAGATTTGGCGTAATG
GTGAACACAATCTTATGATCCCAAGGTGGGTCAATGATGATGCGTGGAAG
GAGAAAATTAGGACTGATGTTAATCAGAATCTGACGTTACCAGGGTTAAA
TGTTTACTTGAGTACGTCTAATCTGTTTTTATCCAGAGCTTGCAGTCAAG
AAGTGTTGCATAGTATTCATAACTCACCAAGTAAGTAGAATctggtaatt
ttgaaaaatgttttttttgtaaaaattatatactttttgggttttaccaa
agaaataaag Run BLAST on NCBI protein sequence of TCONS_00000069-protein >TCONS_00000069-protein ID=TCONS_00000069-protein|Name=TCONS_00000069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
LVSNFKMEITKFSVLWTEVDRNRAAQRPSLSMFIANDTSTPSTHVRRRGS
VQSINSDTDSRGVYDQKQYKRRRRRTWERGETENSLKRNPNNAPRIRINV
RGRKYETYIDTLDRFPDTLLGNKELRNQYYNERKEEIVLGRNYEVFEAVL
FYYQSNGILARPAWVSEKDFEKELKFYQLQPSESEKLRKEKEAQKQAAKT
LASERRPAYQKLIWNLMEHPRSSTPAFTCAILSIFTIIISVVVICLETMS
SITDDPDKKRGYINRKVLFYLETTVMIWFTMEYLLRIISAPRTFKFILSP
TGIIDLVVILPYYINIIIGEEIRSFNLAVFRIVRMFRVFRIFKLTRYSTG
LKVLGRTILESFGQLVALFLCLFLSAILFSSCLFFIEHDSLDHNSEVFIS
IPDTFWYVIITMTSVGYGDVVPRTLIGRVVAAFCMVTGIIVLLCLPTPVF
VTHFGRFYEDVISRPATEQEEDDELTDSEIWRNGEHNLMIPRWVNDDAWK
EKIRTDVNQNLTLPGLNVYLSTSNLFLSRACSQEVLHSIHNSPSK Run BLAST on NCBI transcript from alignment at sc0000001:1521423..1530269+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000069 ID=TCONS_00000069|Name=TCONS_00000069|organism=Clytia hemisphaerica|type=transcript|length=8847bp|location=Sequence derived from alignment at sc0000001:1521423..1530269+ (Clytia hemisphaerica)
CTTGTGTCAAATTTCAAGATGGAAATTACCAAGTTTAGCGTTTTATGGAC
AGAGGTTAGTAAGAAAAATGGGTCTTATACTTTTCCTCCAAAAATTATCA
CATTATAGGATttgttcatttaaaaaatttaccgGTCGGGGATACGTCCG
TCGGGGAAACGTCCGGTCACCAATATTCGAATACTAACAGTTTGTCACTT
TCTAACGAGGATGAACTGTAATATTGAGCTAGTTTCTCGAAGGGAAATCA
CGAAGCCCAAGTACACATTTTTGCCATGTTCTTAAgatattcttaaaatt
tcgtCGACTTCCAGCCATGTTCTCATAAActtggttctaataaaaaagaa
cGTGTAGTATAGTACAGGCTAGATCAGTTCTTTTCGTTGGAAAGATTATC
TCAGATGATGGATAGTAAAATCTTGaattgaagaaaatattatcacccct
tctcacagaccgactgggaccccttcctactggaaaaactggacaaaata
tcgttcccagtggaaaattattctCCATTTTCGTCcatattgaaaataat
cagaaaagcAAATCCTCACTAAAAAGTattgttctattttttttatcccc
actggattttctggctcgaaagctgtgaaaaaacatgggaatatcaatcc
ccatcccAATTTTACCGGGACTTTGAAAAAGGGGGTGTATATTAGGGAGA
TAAACTTTGAAATCTAACACTCTAATGGGTAAGTAAAGATTAGGCTTGAT
AATGGATAGCGGAggatttcttaaaaatattttgaaagtacaATTTCTTT
CTGACTTTGAACGAACGATAATGACTATGAAAATCGATCAATTATTGAGT
GACTGTGCTAATAGTAATGATGTTTATATTTCAAAGTTAGtgaaaaatca
gtgattttttgaaagttcataGGGCAGATAGATGGATAGATTCATTATGT
TAGACTTGGTTGGAAATTCATTTCTATCGTGTGGCCTTTGAAGCCAAACA
ATCAACATCGCGGTCGAGACAGGGCCCCTATAATTCGCGTTTTCCCCGTT
TTTCGATACATTGTAAGGTATTGCACTGTGAGAGTTTTCATAGAAAGAAT
GTTTATAGAGGAAAGAAAAATGTATGAGATATAGAAGAAGAGAATAGTGG
AATGGCAGAAAATATAAGATAATTAGGAGGGggtataaagtaaaaaaaat
atagAGGGAAAAGAAAATTGGGTTGAATATATATCTTCTATGGTGgcgat
gaaaaagaaaagattttttgtgtGAATGAACATAAAcagattatttttgt
tttatgtttgttgatcttaaacaaaaagtttgatactgaGCCCTTTTTAA
AAGTTCGcgatttttactgatttttagtgagagaaaatgaagaaaaatgg
aCGTCATTTGCTACCAatcatcttctttttcaattctttcattttctcat
CTTGATTTAGGGGATAAGAATTAAGTAAAAAATTATCAGGAATGAATGAA
ACGACTattttagtttgttttgtttggttttttaatgtttttctttttgg
tgtTCTTTAAATAGGTTGCTAATTTTTATCCTTTAATACTATTTTAGATC
TgatttagtttcatgttttttgtttacatgaTGAAGGGGGTTGGTACAGA
GGTTTGACTTAAATTATCTTTTTCTAATGAAcatttaaaatgttaaaaat
ttgttAGTTAAgttttctttatatttctttttgacTAATTTATTCACAAA
TTGATTCACGCACATAGTtcaactttattttttaatatggtCTGTTtagt
acatgtttttctttcgaATCTAACAGTCATCATGTTGTTTTGATTATACA
TAGTAGACTTGTGGTAGACATGATAAATACAGCTACGTgctctcattttg
aaaatatgaaattttaaatttccttGATTCACAACGCTGAAACATCttga
atattttgttttgaatgattGTTGAGAGTGTCACCAgcatgaattttttg
tttgggAATGAAGTAAGTTTGATCATTTTAAAAGAATGCAATCTAAGAct
caaagattcttttttttataagaacaatgttttaagaacaacgaggctgg
aaaatataagaacaatttaagaataatgctgACCCTGTGGAACTGCCGAG
TTTCAAGAAATTCAaagatgttctttttttttaagatatctCAATCTTGC
TCCTAAAATATAGGAACAgtataagaacaatctgaggATTAGAGGTTCAA
AAATAAGAATGGTCGGTCCTTAAGAAAAGTTAAGACTACAAttcactggt
tcttataaaaaaaggagtATACGGCATTAAAGTTAAACCCGTAGCCGACT
AAGATTTCGACAgacctgtctcacagccccggtggaactctTTTTCTTAA
TGggaataaaaattctattgttccaaggttaaaaaatccagtggggatgg
ttttggagtgcaatttttaaacattgaatttcgagtggggatgaaatcaa
agtcaattttccaatggggctaaaattccagggtattttccaacCGCGCT
acattttccagtggggctggggttccAGCGGGTTTGTAACACAGGGGTGC
ATTTTGTCAAAACGAAAAAGTTAGAGGGTTTGATCAGACGAAAAGCTGAG
GCGTCAAAGAAGAAATGGACCAACTATGAAAAGCGGTTTCCGTGATGGCG
TGATAAGGAACTTTTTCTTGCGTAATAACgtgttttgcaaattttttatt
ccaTCTTTGAGTGATCAGAGGTCAAAGCGTGATTGTGAttggaaagattt
ttgagccgtgatgcgtGATCTGGACTTTCTCAAAAGGAATGCGTgattat
ccaaattttttatttattttcgtgatcgtgattgaagacaaaaaatagCG
CAACATTGTGATAAATCATAcattcaatttttgaagtttAAATCTATCCT
CTACTTTGAAATGACATGTATATGTGTTCATTGTACTGGGCTAAGTTACG
TTAATAATACTCCGGTATAGATAATATTTTGATATCCCGCACTGGCATTG
TTTGCACTCGTGGGTCTGTAAGAGAATTTGGCCAGGTTTGCTATTCAGAT
TCGGAACGAATTAACCCAGTCGCTTTCGAGCATGAGGCAAGgaggttttg
aatgttttgactAAACAACCAGTAAGATCGTCACATTCGCCATATCCTAT
TAGCAAAGCGTGGTAttcgcagaatggatgatctgttacacgttttttta
taccaacaaactatataagaacataaggcttcgacggccaaaattttcag
aatatttttaaggctttatggactcaaaaacactcgatttcttaggaaaa
tgggtaaaaatggtcaaaaatttgttaaaataagaacatgctaaggaCAT
CTCTTAGTGAAGAGTATGAGATGACAGACTTTTGAAAGATGAGGAAGAGA
GAAGAAACCACATATGATTCTAGACACGCGGTAGGGGGCGAAGCAAAGCA
GCTACCTCCATTTAATCGTGATTCGAATTAAAATAACTGAGATAAATCGA
AATTAATTTGCCATTCAAAAGGGTAGGGTTTCATTTTTCATAGATTCCAA
TTGAAATCTATGACGACTGCATAATGAATTGAATATGTCAAAATGAATTC
GATAGCCAGGGGAGGTGCTATTGTTTCgactgttcttttttgtttcctGT
CTGTGATTTGATGTATCGAAAATCATTTCCGTGTAAAGTTAACGTGACAT
GTGgggaagttgaatttttctGAGTCAGTTTATTTTCTGAGTCAGTTTAT
TTTCTGGTGTAAAAAATATTGAACCGTTGAACAGATTTAGTGTTGATACT
ACTAGAATTCCAAAATGACTCCACAGTCAACAGATGATGAGGTAGGATTT
ATCAACATTCTCCAATATACCGTGTGCATCAAGAAAAAGTTGATTCTTTT
TTATTCTATATAGGAAAActcaacttaaattttggtatatgaAGCTTCAG
TTCAGTCAATCAAAACCTAtgtttaaaaacctgaaaattttgaCCTACCT
AAAATGACAAAATCACACTTGCgtatgtttcttttctcttctaACTCCAC
ACTTAACAAATTATAAGGTGGGATTCAATAACATTCTCCAATATACAAGC
AAACTTTCTTCCTTGAGTAAATTATTCACTGtatgtttcttttgtttctc
ttttctaaaactttttaaaactgCAATCTACAGTACTAACggtacccggg
gggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaattttttcaaa
atctgtcgTTGCTATACATGAGGATATTTATAAGATTTTTCAGGAAAGTT
GTGAACGATTGCCGCGTTTACgcttgtatttttttaaattaaaatgccgt
ttgaagaaactttttgttaatttaatgCAGGCTGTGTACTGTATTAAACA
TTTTCACTTACACACCTCAAAAGCAAGCTCAgtaatatgcttgtaatatg
cttattttttagacaaattcaggTCTTGGTATgcttatgcttataaaaaa
aacatgtagtctaGATATTTTGCCCAAatatgctagaattttgaccattt
tttgctcaaaaaggattgaaaattTGGGAGGAAATGTACTCTAAGGGAAC
GGTACTCTTTACCAGAGCAGAGTGTCTATATCTTACGTACTGTGTGACTT
AGTATAGCCTTTCACTATCCCAACACATGATTTCTCTAGCACTCTGTGGG
ACAGGGTtgaggaaaaagccgtggtcgttTGCCGCAGTGGTAGTTACAGA
GCCAAAGCCGATCGAGCACCAAATAACGCCCCACGCAGCGAAGCCCATAG
TGATAAAGAGGCGGTGCAACAACAAGACAGTTAAGTCTGTGTGTGGATAA
GCCTGGTGTTATGTAGTGCGTTAATGAATTATGAATGAAATTCCGTATGT
ATCGGGTCTGGCATTATACATTCAGATATTGGGTACATCTACCTTGAAAT
AACACAAAACCAAGCTGGCGAATAACTCACAAAATTCGGTCAATTCGGTT
CGTCTCTCGAAGTATtcggaaattttcattttcagtggataCCTATGTTT
TCATTTAAGTACGGTACATCTGCTGGAACAAAGTAGTTTTGCCGTTTTTA
ACAAGCCAatgcaaaattttataaaatttgaaatttttcttcaagcCTGT
GCTTATCATATTTGCATGACAACTTTAACACCTTGAGTGAAAAGGCTCTG
TTGGACAGATTCTATTATGAATAAAATCAACATCTTAAGTGTGAAATGGG
TAAATATTAAGTTCAGTGAATTTCCAAATACTGTATATAAGCGAGCCTCA
AAGAAAAGCTGCAAACTTAAATTACCATCTGCAATGCTTGAAACTTTTCC
AGACAGTAGGGTTTAGAAAGTGAGAGAGCTTTTAACTTATTCCTGTCaag
actatatatatatatatacggGATTGACGGCATATTTAAGAACGTCATAA
tacagtctccataactcgaacacgttcgggaacacaaatttgttcgagtt
aaagagatttcgagatatggagtaaggtttacaTGGCATAACTgcggacg
agaaaacttgttcgagttaaggagatattcgagttaaagaggttcgagtt
aaagagactctactgtaattCTAAGCAGGGAACTCTCAGCAGGCACACAa
cgctgtttcaacgttcatctaacgttatatggacgttgtgaacgttagat
aaacgttgaaacaacgttgtatgccagCTGGGTAGTTATTGATGATAAGT
GTAGCCAAGTCTGAGAAGAAAACGTTTCAAATTCTTCATTTTATAAATTG
ATAGGTTGACAGAAATAGAGCAGCACAGCGGCCTTCGCTCAGCATGTTCA
TAGCAAACGATACAAGTACACCTTCTACACACGTCCGAAGAAGAGGCTCT
GTACAAAGTATAAATTCGGACACTGACTCACGTGGCGTGTATGATCAAAA
ACAATACAAACGACGACGTAGAAGAACCTGGGAACGAGGTGAAACGGAAA
ACTCGTTGAAACGAAACCCGAATAATGCACCGAGGATTCGGATCAATGTT
CGGGGACGGAAATATGAAACGTACATAGGTAAGATAGttgaatttccatt
tttcattgaaaactgaaaaacctCCAGTGTCACATCACGATTTGAATTAT
TTCAAACTCCTACAGGGTCAATGAATGGATAGACATTATTTGAGGCTAGA
AAAGCGTTGCTTCCAGCTCAAAGATTATCCAGAGGTCAGAAAGTTGGTAC
ggattttttttgtaagaagcctttgttcttttaacttttttagttttaag
cctaaagatgtttttattttcaccactttgtgggtatttctttccatttt
cctaagaaatcgggtgttttagagtccgcaaagccttgaaatgttcttgc
cttgttcttaaaatgttggCCATCGAaacattatgttcttatattctTTG
CAAAAAACATGTATCAATTAGATAGTGAGAAGGCNGTTCTTAAAATGTTG
GCCATCGAaacattatgttcttatattctTTGCAAAAAACATGTAAATTA
GATAGTGAGAAAGGTACTTTCAAATAAGTTTCCATAATATTAAACAAATT
CtccattttctttttattagacACACTTGACCGTTTTCCAGACACGTTAC
TAGGCAACAAAGAACTTCGTAACCAATATTACAATGAACGTAAAGAAGAA
ATTGTCTTGGGTAGAAATTATGAAGTCTTCGAAGCCGTGCTCTTCTATTA
ccaatcaaatgggatcttggGTAAGTTTTTAAGAAGACAAAACTCTCAca
acaagttttcaaaaaatcttggcGGAAATTACAATAAATCTTTTGTCCCA
TGGATCTTTGACCAAAGCCTTACCCTTACAAGCAAAACGGAAATCGTACA
AACAAGTTACGCAACTATACGATAAAGTCGTTCTTTCTAATAATATTGAT
TTAATCAAGATAATCAGGAATTTTATACACCATTAGCATcagcatcccct
atatcaaaacatatcagagggaaTGCGTGCAGCCTAATAGAATTTTAAAC
ATTATTCCATTCCAGCAAGACCAGCTTGGGTTAgcgaaaaagattttgaa
aaagaactaaaGTTTTATCAACTGCAACCATCCGAATCTGAAAAActgag
aaaagaaaaagaagctcAGAAACAAGCGGCTAAAACGTTAGCATCAGAGC
GCCGCCCTGCTTATCAGAAACTCATATGGAACCTTATGGAACACCCTCGT
TCATCAACGCCCGCCTTCACATGCGCCATTCTCAGTATCTTTACAATCAT
CATTTCAGTCGTTGTAATCTGTCTTGAAACGATGTCCTCGATCACAGACG
ATCCTGATAAAAAACGAGGCTACATTAATcgcaaagttttattttatctt
gAAACGACAGTCATGATATGGTTTACTATGGAGTATTTATTGAGAATCAT
TTCAGCTCCCAGAACGTTCAAATTCATATTATCACCTACAGGAATAATAG
ATTTGGTTGTTATATTACCTTATTACATCAATATTATAATCGGTGAAGAA
ATCCGTTCGTTTAATTTAGCGGTATTCCGTATAGTGCGAATGTTTCGCGT
TTTCAGGATTTTCAAATTAACTCGATACAGTACCGGATTGAAAGTGCTGG
GTCGTACTATTCTTGAAAGTTTTGGACAACTTGTTGCTCTCTTTCTCTGC
TTATTTTTGTCAGCGATTCTATTctccagttgtttattttttatcgaACA
CGATAGCTTGGACCATAATTCCGAAGTGTTTATTAGTATTCCGGACACTT
TTTGGTACGTCATCATTACTATGACTTCGGTTGGTTACGGAGACGTCGTT
CCGCGAACGTTAATTGGACGTGTAGTTGCTGCCTTTTGCATGGTAACAGG
AATTATAGTTTTGTTATGTTTACCAACACCCGTCTTTGTGACGCATTTCG
GACGATTTTATGAAGACGTCATCAGTAGGCCGGCCACTGAACAAGAAGAG
GATGATGAATTGACCGACTCTGAGATTTGGCGTAATGGTGAACACAATCT
TATGATCCCAAGGTGGGTCAATGATGATGCGTGGAAGGAGAAAATTAGGA
CTGATGTTAATCAGAATCTGACGTTACCAGGGTTAAATGTTTACTTGAGT
ACGTCTAATCTGTTTTTATCCAGAGCTTGCAGTCAAGAAGTGTTGCATAG
TATTCATAACTCACCAAGTAAGTAGAATctggtaattttgaaaaatgttt
tttttgtaaaaattatatactttttgggttttaccaaagaaataaag Coding sequence (CDS) from alignment at sc0000001:1521423..1530269+ >TCONS_00000069 ID=TCONS_00000069|Name=TCONS_00000069|organism=Clytia hemisphaerica|type=CDS|length=6552bp|location=Sequence derived from alignment at sc0000001:1521423..1530269+ (Clytia hemisphaerica)
CTTGTGTCAAATTTCAAGATGGAAATTACCAAGTTTAGCGTTTTATGGAC
AGAGGTTGACAGAAATAGAGCAGCACAGCGGCCTTCGCTCAGCATGTTCA
TAGCAAACGATACAAGTACACCTTCTACACACGTCCGAAGAAGAGGCTCT
GTACAAAGTATAAATTCGGACACTGACTCACGTGGCGTGTATGATCAAAA
ACAATACAAACGACGACGTAGAAGAACCTGGGAACGAGGTGAAACGGAAA
ACTCGTTGAAACGAAACCCGAATAATGCACCGAGGATTCGGATCAATGTT
CGGGGACGGAAATATGAAACGTACATAGacACACTTGACCGTTTTCCAGA
CACGTTACTAGGCAACAAAGAACTTCGTAACCAATATTACAATGAACGTA
AAGAAGAAATTGTCTTGGGTAGAAATTATGAAGTCTTCGAAGCCGTGCTC
TTCTATTAccaatcaaatgggatcttggCAAGACCAGCTTGGGTTAgcga
aaaagattttgaaaaagaactaaaGTTTTATCAACTGCAACCATCCGAAT
CTGAAAAActgagaaaagaaaaagaagctcAGAAACAAGCGGCTAAAACG
TTAGCATCAGAGCGCCGCCCTGCTTATCAGAAACTCATATGGAACCTTAT
GGAACACCCTCGTTCATCAACGCCCGCCTTCACATGCGCCATTCTCAGTA
TCTTTACAATCATCATTTCAGTCGTTGTAATCTGTCTTGAAACGATGTCC
TCGATCACAGACGATCCTGATAAAAAACGAGGCTACATTAATcgcaaagt
tttattttatcttgAAACGACAGTCATGATATGGTTTACTATGGAGTATT
TATTGAGAATCATTTCAGCTCCCAGAACGTTCAAATTCATATTATCACCT
ACAGGAATAATAGATTTGGTTGTTATATTACCTTATTACATCAATATTAT
AATCGGTGAAGAAATCCGTTCGTTTAATTTAGCGGTATTCCGTATAGTGC
GAATGTTTCGCGTTTTCAGGATTTTCAAATTAACTCGATACAGTACCGGA
TTGAAAGTGCTGGGTCGTACTATTCTTGAAAGTTTTGGACAACTTGTTGC
TCTCTTTCTCTGCTTATTTTTGTCAGCGATTCTATTctccagttgtttat
tttttatcgaACACGATAGCTTGGACCATAATTCCGAAGTGTTTATTAGT
ATTCCGGACACTTTTTGGTACGTCATCATTACTATGACTTCGGTTGGTTA
CGGAGACGTCGTTCCGCGAACGTTAATTGGACGTGTAGTTGCTGCCTTTT
GCATGGTAACAGGAATTATAGTTTTGTTATGTTTACCAACACCCGTCTTT
GTGACGCATTTCGGACGATTTTATGAAGACGTCATCAGTAGGCCGGCCAC
TGAACAAGAAGAGGATGATGAATTGACCGACTCTGAGATTTGGCGTAATG
GTGAACACAATCTTATGATCCCAAGGTGGGTCAATGATGATGCGTGGAAG
GAGAAAATTAGGACTGATGTTAATCAGAATCTGACGTTACCAGGGTTAAA
TGTTTACTTGAGTACGTCTAATCTGTTTTTATCCAGAGCTTGCAGTCAAG
AAGTGTTGCATAGTATTCATAACTCACCAAGTAAGTAGCTTGTGTCAAAT
TTCAAGATGGAAATTACCAAGTTTAGCGTTTTATGGACAGAGGTTGACAG
AAATAGAGCAGCACAGCGGCCTTCGCTCAGCATGTTCATAGCAAACGATA
CAAGTACACCTTCTACACACGTCCGAAGAAGAGGCTCTGTACAAAGTATA
AATTCGGACACTGACTCACGTGGCGTGTATGATCAAAAACAATACAAACG
ACGACGTAGAAGAACCTGGGAACGAGGTGAAACGGAAAACTCGTTGAAAC
GAAACCCGAATAATGCACCGAGGATTCGGATCAATGTTCGGGGACGGAAA
TATGAAACGTACATAGacACACTTGACCGTTTTCCAGACACGTTACTAGG
CAACAAAGAACTTCGTAACCAATATTACAATGAACGTAAAGAAGAAATTG
TCTTGGGTAGAAATTATGAAGTCTTCGAAGCCGTGCTCTTCTATTAccaa
tcaaatgggatcttggCAAGACCAGCTTGGGTTAgcgaaaaagattttga
aaaagaactaaaGTTTTATCAACTGCAACCATCCGAATCTGAAAAActga
gaaaagaaaaagaagctcAGAAACAAGCGGCTAAAACGTTAGCATCAGAG
CGCCGCCCTGCTTATCAGAAACTCATATGGAACCTTATGGAACACCCTCG
TTCATCAACGCCCGCCTTCACATGCGCCATTCTCAGTATCTTTACAATCA
TCATTTCAGTCGTTGTAATCTGTCTTGAAACGATGTCCTCGATCACAGAC
GATCCTGATAAAAAACGAGGCTACATTAATcgcaaagttttattttatct
tgAAACGACAGTCATGATATGGTTTACTATGGAGTATTTATTGAGAATCA
TTTCAGCTCCCAGAACGTTCAAATTCATATTATCACCTACAGGAATAATA
GATTTGGTTGTTATATTACCTTATTACATCAATATTATAATCGGTGAAGA
AATCCGTTCGTTTAATTTAGCGGTATTCCGTATAGTGCGAATGTTTCGCG
TTTTCAGGATTTTCAAATTAACTCGATACAGTACCGGATTGAAAGTGCTG
GGTCGTACTATTCTTGAAAGTTTTGGACAACTTGTTGCTCTCTTTCTCTG
CTTATTTTTGTCAGCGATTCTATTctccagttgtttattttttatcgaAC
ACGATAGCTTGGACCATAATTCCGAAGTGTTTATTAGTATTCCGGACACT
TTTTGGTACGTCATCATTACTATGACTTCGGTTGGTTACGGAGACGTCGT
TCCGCGAACGTTAATTGGACGTGTAGTTGCTGCCTTTTGCATGGTAACAG
GAATTATAGTTTTGTTATGTTTACCAACACCCGTCTTTGTGACGCATTTC
GGACGATTTTATGAAGACGTCATCAGTAGGCCGGCCACTGAACAAGAAGA
GGATGATGAATTGACCGACTCTGAGATTTGGCGTAATGGTGAACACAATC
TTATGATCCCAAGGTGGGTCAATGATGATGCGTGGAAGGAGAAAATTAGG
ACTGATGTTAATCAGAATCTGACGTTACCAGGGTTAAATGTTTACTTGAG
TACGTCTAATCTGTTTTTATCCAGAGCTTGCAGTCAAGAAGTGTTGCATA
GTATTCATAACTCACCAAGTAAGTAGCTTGTGTCAAATTTCAAGATGGAA
ATTACCAAGTTTAGCGTTTTATGGACAGAGGTTGACAGAAATAGAGCAGC
ACAGCGGCCTTCGCTCAGCATGTTCATAGCAAACGATACAAGTACACCTT
CTACACACGTCCGAAGAAGAGGCTCTGTACAAAGTATAAATTCGGACACT
GACTCACGTGGCGTGTATGATCAAAAACAATACAAACGACGACGTAGAAG
AACCTGGGAACGAGGTGAAACGGAAAACTCGTTGAAACGAAACCCGAATA
ATGCACCGAGGATTCGGATCAATGTTCGGGGACGGAAATATGAAACGTAC
ATAGacACACTTGACCGTTTTCCAGACACGTTACTAGGCAACAAAGAACT
TCGTAACCAATATTACAATGAACGTAAAGAAGAAATTGTCTTGGGTAGAA
ATTATGAAGTCTTCGAAGCCGTGCTCTTCTATTAccaatcaaatgggatc
ttggCAAGACCAGCTTGGGTTAgcgaaaaagattttgaaaaagaactaaa
GTTTTATCAACTGCAACCATCCGAATCTGAAAAActgagaaaagaaaaag
aagctcAGAAACAAGCGGCTAAAACGTTAGCATCAGAGCGCCGCCCTGCT
TATCAGAAACTCATATGGAACCTTATGGAACACCCTCGTTCATCAACGCC
CGCCTTCACATGCGCCATTCTCAGTATCTTTACAATCATCATTTCAGTCG
TTGTAATCTGTCTTGAAACGATGTCCTCGATCACAGACGATCCTGATAAA
AAACGAGGCTACATTAATcgcaaagttttattttatcttgAAACGACAGT
CATGATATGGTTTACTATGGAGTATTTATTGAGAATCATTTCAGCTCCCA
GAACGTTCAAATTCATATTATCACCTACAGGAATAATAGATTTGGTTGTT
ATATTACCTTATTACATCAATATTATAATCGGTGAAGAAATCCGTTCGTT
TAATTTAGCGGTATTCCGTATAGTGCGAATGTTTCGCGTTTTCAGGATTT
TCAAATTAACTCGATACAGTACCGGATTGAAAGTGCTGGGTCGTACTATT
CTTGAAAGTTTTGGACAACTTGTTGCTCTCTTTCTCTGCTTATTTTTGTC
AGCGATTCTATTctccagttgtttattttttatcgaACACGATAGCTTGG
ACCATAATTCCGAAGTGTTTATTAGTATTCCGGACACTTTTTGGTACGTC
ATCATTACTATGACTTCGGTTGGTTACGGAGACGTCGTTCCGCGAACGTT
AATTGGACGTGTAGTTGCTGCCTTTTGCATGGTAACAGGAATTATAGTTT
TGTTATGTTTACCAACACCCGTCTTTGTGACGCATTTCGGACGATTTTAT
GAAGACGTCATCAGTAGGCCGGCCACTGAACAAGAAGAGGATGATGAATT
GACCGACTCTGAGATTTGGCGTAATGGTGAACACAATCTTATGATCCCAA
GGTGGGTCAATGATGATGCGTGGAAGGAGAAAATTAGGACTGATGTTAAT
CAGAATCTGACGTTACCAGGGTTAAATGTTTACTTGAGTACGTCTAATCT
GTTTTTATCCAGAGCTTGCAGTCAAGAAGTGTTGCATAGTATTCATAACT
CACCAAGTAAGTAGCTTGTGTCAAATTTCAAGATGGAAATTACCAAGTTT
AGCGTTTTATGGACAGAGGTTGACAGAAATAGAGCAGCACAGCGGCCTTC
GCTCAGCATGTTCATAGCAAACGATACAAGTACACCTTCTACACACGTCC
GAAGAAGAGGCTCTGTACAAAGTATAAATTCGGACACTGACTCACGTGGC
GTGTATGATCAAAAACAATACAAACGACGACGTAGAAGAACCTGGGAACG
AGGTGAAACGGAAAACTCGTTGAAACGAAACCCGAATAATGCACCGAGGA
TTCGGATCAATGTTCGGGGACGGAAATATGAAACGTACATAGacACACTT
GACCGTTTTCCAGACACGTTACTAGGCAACAAAGAACTTCGTAACCAATA
TTACAATGAACGTAAAGAAGAAATTGTCTTGGGTAGAAATTATGAAGTCT
TCGAAGCCGTGCTCTTCTATTAccaatcaaatgggatcttggCAAGACCA
GCTTGGGTTAgcgaaaaagattttgaaaaagaactaaaGTTTTATCAACT
GCAACCATCCGAATCTGAAAAActgagaaaagaaaaagaagctcAGAAAC
AAGCGGCTAAAACGTTAGCATCAGAGCGCCGCCCTGCTTATCAGAAACTC
ATATGGAACCTTATGGAACACCCTCGTTCATCAACGCCCGCCTTCACATG
CGCCATTCTCAGTATCTTTACAATCATCATTTCAGTCGTTGTAATCTGTC
TTGAAACGATGTCCTCGATCACAGACGATCCTGATAAAAAACGAGGCTAC
ATTAATcgcaaagttttattttatcttgAAACGACAGTCATGATATGGTT
TACTATGGAGTATTTATTGAGAATCATTTCAGCTCCCAGAACGTTCAAAT
TCATATTATCACCTACAGGAATAATAGATTTGGTTGTTATATTACCTTAT
TACATCAATATTATAATCGGTGAAGAAATCCGTTCGTTTAATTTAGCGGT
ATTCCGTATAGTGCGAATGTTTCGCGTTTTCAGGATTTTCAAATTAACTC
GATACAGTACCGGATTGAAAGTGCTGGGTCGTACTATTCTTGAAAGTTTT
GGACAACTTGTTGCTCTCTTTCTCTGCTTATTTTTGTCAGCGATTCTATT
ctccagttgtttattttttatcgaACACGATAGCTTGGACCATAATTCCG
AAGTGTTTATTAGTATTCCGGACACTTTTTGGTACGTCATCATTACTATG
ACTTCGGTTGGTTACGGAGACGTCGTTCCGCGAACGTTAATTGGACGTGT
AGTTGCTGCCTTTTGCATGGTAACAGGAATTATAGTTTTGTTATGTTTAC
CAACACCCGTCTTTGTGACGCATTTCGGACGATTTTATGAAGACGTCATC
AGTAGGCCGGCCACTGAACAAGAAGAGGATGATGAATTGACCGACTCTGA
GATTTGGCGTAATGGTGAACACAATCTTATGATCCCAAGGTGGGTCAATG
ATGATGCGTGGAAGGAGAAAATTAGGACTGATGTTAATCAGAATCTGACG
TTACCAGGGTTAAATGTTTACTTGAGTACGTCTAATCTGTTTTTATCCAG
AGCTTGCAGTCAAGAAGTGTTGCATAGTATTCATAACTCACCAAGTAAGT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000069-exon-sc0000001-1491911889:1521423..1521476 | TCONS_00000069-exon-sc0000001-1491911889:1521423..1521476 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1510915933:1521423..1521476 | TCONS_00000069-exon-sc0000001-1510915933:1521423..1521476 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1575043694:1521423..1521476 | TCONS_00000069-exon-sc0000001-1575043694:1521423..1521476 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1491911889:1527777..1528050 | TCONS_00000069-exon-sc0000001-1491911889:1527777..1528050 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1510915933:1527777..1528050 | TCONS_00000069-exon-sc0000001-1510915933:1527777..1528050 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1575043694:1527777..1528050 | TCONS_00000069-exon-sc0000001-1575043694:1527777..1528050 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1491911889:1528593..1528742 | TCONS_00000069-exon-sc0000001-1491911889:1528593..1528742 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1510915933:1528593..1528742 | TCONS_00000069-exon-sc0000001-1510915933:1528593..1528742 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1575043694:1528593..1528742 | TCONS_00000069-exon-sc0000001-1575043694:1528593..1528742 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1491911889:1529038..1530269 | TCONS_00000069-exon-sc0000001-1491911889:1529038..1530269 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1510915933:1529038..1530269 | TCONS_00000069-exon-sc0000001-1510915933:1529038..1530269 | Clytia hemisphaerica | exon |
| TCONS_00000069-exon-sc0000001-1575043694:1529038..1530269 | TCONS_00000069-exon-sc0000001-1575043694:1529038..1530269 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1521423..1530269 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0051260 | protein homooligomerization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00000069 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 8.489e-65 Identity = 151/402 (37.56%), Postives = 231/402 (57.46%), Query Frame = 1
Query: 304 GRKYETYIDTLDRFPDTLLGNKELRNQYYNERKEEIVLGRNYEVFEAVLFYYQSNGILARPAWVSEKDFEKELKFYQLQPSESEKLRXXXXXXXXXXXTLASERRP----AYQKLIWNLMEHPRSSTPAFTCAXXXXXXXXXXXXXXCLETMSSITDDPDKKRGYINR--------------KVLFYLETTVMIWFTMEYLLRIISAPRTFKFILSPTGIIDLVVILPYYINIIIGEEI----------RSFNLAXXXXXXXXXXXXXXKLTRYSTGLKVLGRTILESFGQLVALFLCLFLSAILFSSCLFFIEHDSLDHNSEVFISIPDTFWYVIITMTSVGYGDVVPRTLIGRVVAAFCMVTGIIVLLCLPTPVFVTHFGRFYEDVISRPATEQEEDDEL 1425
G ++ET + TL +FP+TLLGN + R +Y++ + E RN F+A+L+YYQS G L RP V F +E+KFY+L EK R+++ + E RP YQ+ +W L E+P SS PA AI+S+ I+IS+V+ CLET+ + DD D G ++R F +ET +IWF+ E ++R + P F + ID+V I+PY+I +G EI ++ +LA+ R++R+ RVFRIFKL+R+S GL++LG+T+ S +L L LF+ ILFSS ++F E + + + F SIPD FW+ +++MT+VGYGD+ P T+ G++V + C + G++ + LP PV V++F FY TE EE +L
Sbjct: 45 GLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGF-------IKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFT-GTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFIT--LGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESH---FSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLT-IALPVPVIVSNFNYFYHR-----ETEGEEQAQL 427
The following BLAST results are available for this feature:
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