Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000069-protein ID=TCONS_00000069-protein|Name=TCONS_00000069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006813 potassium ion transport GO:0055085 transmembrane transport GO:0006811 ion transport GO:0051260 protein homooligomerization
Vocabulary: Molecular Function
Term Definition
GO:0005249 voltage-gated potassium channel activity GO:0005216 ion channel activity
Vocabulary: Cellular Component
Term Definition
GO:0008076 voltage-gated potassium channel complex GO:0016020 membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006811 ion transport
biological_process
GO:0006813 potassium ion transport
biological_process
GO:0051260 protein homooligomerization
biological_process
GO:0055085 transmembrane transport
cellular_component
GO:0016020 membrane
cellular_component
GO:0008076 voltage-gated potassium channel complex
molecular_function
GO:0005216 ion channel activity
molecular_function
GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 Score = Expect = 7.1E-30 / Score = 103.0 Expect = 7.0E-9 / Score = 34.7 Expect = 1.4E-16 / Score = 59.9 Expect = 1.7E-13 / Score = 50.0 Score = Score = Score = 37.68 Score = 42.69 Score = 40.46 Score = 44.48 Score = 54.64 Score = 35.18 Score = 61.41 Score = 18.21 Expect = 4.0E-33 / Score = 114.6 Expect = 1.4E-18 / Score = 66.9 Score = Sequence Coil G3DSA:1.20.120.350 G3DSA:1.20.5.110 G3DSA:3.30.710.10 G3DSA:1.10.287.70 mobidb-lite SSF81324 PR00169 PF00520 PF02214 SSF54695
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 184..204 None No IPR available GENE3D 1.20.120.350 coord: 226..363 None No IPR available GENE3D 1.20.5.110 coord: 419..454 None No IPR available GENE3D 3.30.710.10 coord: 83..207 None No IPR available GENE3D 1.10.287.70 coord: 364..417 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 32..93 None No IPR available SUPERFAMILY 81324 Voltage-gated potassium channels coord: 225..443 IPR028325 Voltage-gated potassium channel PRINTS PR00169 KCHANNEL coord: 270..293 IPR005821 Ion transport domain PFAM PF00520 Ion_trans coord: 229..460 IPR003131 Potassium channel tetramerisation-type BTB domain PFAM PF02214 BTB_2 coord: 96..184 IPR011333 SKP1/BTB/POZ domain SUPERFAMILY 54695 POZ domain coord: 95..182
Blast
BLAST of TCONS_00000069-protein vs. Swiss-Prot (Human)
Match:
KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)
HSP 1 Score: 279.256 bits (713), Expect = 1.087e-87
Identity = 153/405 (37.78%), Postives = 237/405 (58.52%), Query Frame = 0
Query: 95 RIRINVRGRKYETYIDTLDRFPDTLLGNKELRNQYYNERKEEIVLGRNYEVFEAVLFYYQSNGILARPAWVSEKDFEKELKFYQLQPSESEKLRKEKEAQKQAAKTLASERRPAYQKLIWNLMEHPRSSTPAFTCAILSIFTIIISVVVICLETMSSITDDPDKKRGYINR--------------KVLFYLETTVMIWFTMEYLLRIISAPRTFKFILSPTGIIDLVVILPYYINIIIGEEI----------RSFNLAVFRIVRMFRVFRIFKLTRYSTGLKVLGRTILESFGQLVALFLCLFLSAILFSSCLFFIEHDSLDHNSEVFISIPDTFWYVIITMTSVGYGDVVPRTLIGRVVAAFCMVTGIIVLLCLPTPVFVTHFGRFYEDVISRPATEQEEDDEL 475
R+ IN+ G ++ET + TL +FP+TLLGN + R +Y++ + E RN F+A+L+YYQS G L RP V F +E+KFY+L EK R+++ K+ + L + YQ+ +W L E+P SS PA AI+S+ I+IS+V+ CLET+ + DD D G ++R F +ET +IWF+ E ++R + P F + ID+V I+PY+I +G EI ++ +LA+ R++R+ RVFRIFKL+R+S GL++LG+T+ S +L L LF+ ILFSS ++F E + + + F SIPD FW+ +++MT+VGYGD+ P T+ G++V + C + G++ + LP PV V++F FY TE EE +L
Sbjct: 38 RVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKE---YQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFT-GTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFIT--LGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESH---FSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLT-IALPVPVIVSNFNYFYHR-----ETEGEEQAQL 427
The following BLAST results are available for this feature:
BLAST of TCONS_00000069-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
L V S N F K M E I T K F S V L W T E V D R N R A A Q R P S L S M F I A N D T S T P S T H V R R R G S V Q S I N S D T D S R G V Y D Q K Q Y K R R R R R T W E R G E T E N S L K R N P N N A P R I R I N V R G R K Y E T Y I D T L D R F P D T L L G N K E L R N Q Y Y N E R K E E I V L G R N Y E V F E A V L F Y Y Q S N G I L A R P A W V S E K D F E K E L K F Y Q L Q P S E S E K L R K E K E A Q K Q A A K T L A S E R R P A Y Q K L I W N L M E H P R S S T P A F T C A I L S I F T I I I S V V V I C L E T M S S I T D D P D K K R G Y I N R K V L F Y L E T T V M I W F T M E Y L L R I I S A P R T F K F I L S P T G I I D L V V I L P Y Y I N I I I G E E I R S F N L A V F R I V R M F R V F R I F K L T R Y S T G L K V L G R T I L E S F G Q L V A L F L C L F L S A I L F S S C L F F I E H D S L D H N S E V F I S I P D T F W Y V I I T M T S V G Y G D V V P R T L I G R V V A A F C M V T G I I V L L C L P T P V F V T H F G R F Y E D V I S R P A T E Q E E D D E L T D S E I W R N G E H N L M I P R W V N D D A W K E K I R T D V N Q N L T L P G L N V Y L S T S N L F L S R A C S Q E V L H S I H N S P S K 50 100 150 200 250 300 350 400 450 500 Expect = 1.09e-87 / Id = 37.78 Sequence KCNA1
Match Name E-value Identity Description
KCNA1 1.087e-87 37.78 Potassium voltage-gated channel subfamily A member... [more]
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