TCONS_00004428-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004428-protein
Unique NameTCONS_00004428-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004428-protein ID=TCONS_00004428-protein|Name=TCONS_00004428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MNNESSEKLINERTPLKKSVSFDSQTRAPSHILNINNKMNGTRKRAQSLR
DMASSKSDEIVSGVRVKSNKRASKRKPTDHRLVEKNGKRNVKSRHLPRDR
YLQDIFTTIIDAKWKWMLVVFTLFYLGSWLAVGFLWWLILISHGEKCFTN
VTNFTEAFLMSIETSVTIGYGTRQITSECPQAVLLLIIQASLSCLTDAVI
MGLIFTKVARPGKRQSTIVFSEKAVVNKKDDKYCLMFKIADVRKRQLVEC
HVRLHLFRRYKTLEGQFLTQQDQLRVGMDWYNIRDDSDRLFLMTPCNVVH
VIDRKSPFYHISKEKLMASDWELVVILEGIVEATGCTLQTRTSYLADEVI
WGYDFVEMADDWTEDEGILYNLADINNIERCMYNMPECSASSYYKKILKD
PDPNDVYGEQDELWDDENFIPPGFATGRVLPTHKELTTSDNNSVFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002477XLOC_002477Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004428TCONS_00004428Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016449K_chnl_inward-rec_Kir
IPR013518K_chnl_inward-rec_Kir_cyto
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005242inward rectifier potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005242 inward rectifier potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016449Potassium channel, inwardly rectifying, KirPRINTSPR01320KIRCHANNELcoord: 290..308
score: 47.37
coord: 114..140
score: 42.66
coord: 321..341
score: 63.55
coord: 342..359
score: 44.92
IPR016449Potassium channel, inwardly rectifying, KirPFAMPF01007IRKcoord: 83..394
e-value: 9.4E-103
score: 343.5
IPR013518Potassium channel, inwardly rectifying, Kir, cytoplasmicGENE3D2.60.40.1400coord: 207..401
e-value: 1.0E-56
score: 191.1
NoneNo IPR availableGENE3D1.10.287.70coord: 91..206
e-value: 2.2E-18
score: 65.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 94..209
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 194..392

Blast
[Close]
BLAST of TCONS_00004428-protein vs. Swiss-Prot (Human)
Match: KCNJ2 (Inward rectifier potassium channel 2 OS=Homo sapiens GN=KCNJ2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.488e-84
Identity = 147/380 (38.68%), Postives = 218/380 (57.37%), Query Frame = 0 
Query:   71 RASKRKPTDHRLVEKNGKRNVKSRHLPR--DRYLQDIFTTIIDAKWKWMLVVFTLFYLGSWLAVGFLWWLILISHGE--------KCFTNVTNFTEAFLMSIETSVTIGYGTRQITSECPQAVLLLIIQASLSCLTDAVIMGLIFTKVARPGKRQSTIVFSEKAVVNKKDDKYCLMFKIADVRKRQLVECHVRLHLFRRYKTLEGQFLT-QQDQLRVGMDWYNIRDDSDRLFLMTPCNVVHVIDRKSPFYHISKEKLMASDWELVVILEGIVEATGCTLQTRTSYLADEVIWGYDFVEMADDWTEDEGILYNLADINNIERCMY-------NMPECSASSYYKK--ILKDPDP----NDVYGEQDELWDDENFIPPGFAT 426
            +   R+    R V+K+G  NV+  ++     RYL DIFTT +D +W+WMLV+F L ++ SWL  G ++WLI + HG+         C + V +FT AFL SIET  TIGYG R +T ECP AV +++ Q+ + C+ DA I+G +  K+A+P KR  T+VFS  AV+  +D K CLM+++ ++RK  LVE HVR  L +   T EG+++   Q  + VG D        DR+FL++P  +VH ID  SP Y +SK+ +  +D+E+VVILEG+VEAT  T Q R+SYLA+E++WG+ +          E +L+       ++   +       N P CSA    +K  IL + +     N+V     E  D EN +P   +T
Sbjct:   36 KVHTRQQCRSRFVKKDGHCNVQFINVGEKGQRYLADIFTTCVDIRWRWMLVIFCLAFVLSWLFFGCVFWLIALLHGDLDASKEGKACVSEVNSFTAAFLFSIETQTTIGYGFRCVTDECPIAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFD-----SGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRY----------EPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYILSNANSFCYENEVALTSKEEDDSENGVPESTST 400
The following BLAST results are available for this feature:
BLAST of TCONS_00004428-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNJ25.488e-8438.68Inward rectifier potassium channel 2 OS=Homo sapie... [more]
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