TCONS_00004428-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004428-protein
Unique Name	TCONS_00004428-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	446

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004428-protein ID=TCONS_00004428-protein|Name=TCONS_00004428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MNNESSEKLINERTPLKKSVSFDSQTRAPSHILNINNKMNGTRKRAQSLR
DMASSKSDEIVSGVRVKSNKRASKRKPTDHRLVEKNGKRNVKSRHLPRDR
YLQDIFTTIIDAKWKWMLVVFTLFYLGSWLAVGFLWWLILISHGEKCFTN
VTNFTEAFLMSIETSVTIGYGTRQITSECPQAVLLLIIQASLSCLTDAVI
MGLIFTKVARPGKRQSTIVFSEKAVVNKKDDKYCLMFKIADVRKRQLVEC
HVRLHLFRRYKTLEGQFLTQQDQLRVGMDWYNIRDDSDRLFLMTPCNVVH
VIDRKSPFYHISKEKLMASDWELVVILEGIVEATGCTLQTRTSYLADEVI
WGYDFVEMADDWTEDEGILYNLADINNIERCMYNMPECSASSYYKKILKD
PDPNDVYGEQDELWDDENFIPPGFATGRVLPTHKELTTSDNNSVFS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002477	XLOC_002477	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004428	TCONS_00004428	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016449	K_chnl_inward-rec_Kir
IPR013518	K_chnl_inward-rec_Kir_cyto
IPR014756	Ig_E-set

Vocabulary: **Molecular Function**
Term	Definition
GO:0005242	inward rectifier potassium channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006813	potassium ion transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006813	potassium ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005242	inward rectifier potassium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016449	Potassium channel, inwardly rectifying, Kir	PRINTS	PR01320	KIRCHANNEL	coord: 290..308 score: 47.37 coord: 114..140 score: 42.66 coord: 321..341 score: 63.55 coord: 342..359 score: 44.92
IPR016449	Potassium channel, inwardly rectifying, Kir	PFAM	PF01007	IRK	coord: 83..394 e-value: 9.4E-103 score: 343.5
IPR013518	Potassium channel, inwardly rectifying, Kir, cytoplasmic	GENE3D	2.60.40.1400		coord: 207..401 e-value: 1.0E-56 score: 191.1
None	No IPR available	GENE3D	1.10.287.70		coord: 91..206 e-value: 2.2E-18 score: 65.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 94..209
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 194..392

Blast

[Close]

BLAST of TCONS_00004428-protein vs. Swiss-Prot (Human)
Match: KCNJ2 (Inward rectifier potassium channel 2 OS=Homo sapiens GN=KCNJ2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.488e-84
Identity = 147/380 (38.68%), Postives = 218/380 (57.37%), Query Frame = 0

Query:   71 RASKRKPTDHRLVEKNGKRNVKSRHLPR--DRYLQDIFTTIIDAKWKWMLVVFTLFYLGSWLAVGFLWWLILISHGE--------KCFTNVTNFTEAFLMSIETSVTIGYGTRQITSECPQAVLLLIIQASLSCLTDAVIMGLIFTKVARPGKRQSTIVFSEKAVVNKKDDKYCLMFKIADVRKRQLVECHVRLHLFRRYKTLEGQFLT-QQDQLRVGMDWYNIRDDSDRLFLMTPCNVVHVIDRKSPFYHISKEKLMASDWELVVILEGIVEATGCTLQTRTSYLADEVIWGYDFVEMADDWTEDEGILYNLADINNIERCMY-------NMPECSASSYYKK--ILKDPDP----NDVYGEQDELWDDENFIPPGFAT 426
            +   R+    R V+K+G  NV+  ++     RYL DIFTT +D +W+WMLV+F L ++ SWL  G ++WLI + HG+         C + V +FT AFL SIET  TIGYG R +T ECP AV +++ Q+ + C+ DA I+G +  K+A+P KR  T+VFS  AV+  +D K CLM+++ ++RK  LVE HVR  L +   T EG+++   Q  + VG D        DR+FL++P  +VH ID  SP Y +SK+ +  +D+E+VVILEG+VEAT  T Q R+SYLA+E++WG+ +          E +L+       ++   +       N P CSA    +K  IL + +     N+V     E  D EN +P   +T
Sbjct:   36 KVHTRQQCRSRFVKKDGHCNVQFINVGEKGQRYLADIFTTCVDIRWRWMLVIFCLAFVLSWLFFGCVFWLIALLHGDLDASKEGKACVSEVNSFTAAFLFSIETQTTIGYGFRCVTDECPIAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFD-----SGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRY----------EPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYILSNANSFCYENEVALTSKEEDDSENGVPESTST 400

The following BLAST results are available for this feature:

BLAST of TCONS_00004428-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004428-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCNJ2	5.488e-84	38.68	Inward rectifier potassium channel 2 OS=Homo sapie...	[more]

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TCONS_00004428-protein (polypeptide) - C. hemisphaerica