TCONS_00004428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004428
Unique NameTCONS_00004428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004428 ID=TCONS_00004428|Name=TCONS_00004428|organism=Clytia hemisphaerica|type=transcript|length=2202bp
ATCTTTTAAGTTACAATGGTATGATGGTTGAAATTGATAGTGAAATGTTG
TGTTCTTTgtacattcaaattttttttttagatatgaGACTGCAAAATGA
ATAATGAAAGTagtgaaaaattaattaatgaGCGTACACCTCTAAAAAAA
TCTGTCAGTTTTGACAGTCAGACTCGTGCTCCAAGTCACATTCTTAACAT
TAATAACAAAATGAATGGAACAAGAAAACGAGCCCAAAGTTTAAGAGATA
TGGCAAGTtcaaaaagtgatgaaattgtCAGTGGCgttcgagtaaaatca
aacaaaagagCCTCCAAAAGAAAGCCCACTGATCATCGTCTTGTTGAAAA
GAACGGTAAAAGAAATGTCAAATCTAGACATTTACCACGTGATCGTTATC
TTCAAGATATTTTTACAACAATTATTGATGCAAAATGGAAATGGATGCTG
GTTGTCTTCACCTTGTTTTATCTTGgATCATGGCTAGCTGTGGGTTTTCT
ATGGTGGCTAATACTCATTTCACACGGTGAAAAGTGTTTTACAAACGTAA
CAAATTTCACAGAAGCTTTTTTGATGTCAATAGAGACATCAGTTACAATT
GGTTACGGTACCAGGCAGATCACTTCGGAATGTCCTCAGGCAGTTCTACT
TTTAATCATTCAAGCGTCACTCAGTTGTTTAACAGATGCAGTCATCATGG
GTTTAATTTTCACCAAGGTGGCACGTCCAGGAAAGCGACAGAGTACCATA
GTTTTTTCAGAGAAAGCAGTTGTTAACAAAAAGGATGATAAATACTGTCT
CATGTTTAAAATTGCTGATGTACGAAAACGCCAACTTGTTGAGTGTCATG
TGCGGTTGCATCTATTTCGAAGATATAAAACTTTAGAGGGTCAATTCCTC
ACCCAACAAGACCAACTGCGAGTGGGTATGGACTGGTATAACATTCGTGA
TGACAGTGATAGACTCTTTTTAATGACACCTTGTAATGTAGTACATGTAA
TAGACAGGAAAAGTCCTTTTTATCATATTTCTAAAGAGAAGTTGATGGCT
TCAGATTGGGAATTGGTTGTCATTTTAGAAGGTATTGTTGAAGCAACAGG
TTGCACATTACAAACACGTACATCTTATTTAGCTGATGAAGTTATTTGGG
GATACGACTTTGTTGAAATGGCTGATGATTGGACAGAGGACGAAGGTATT
CTTTACAATTTGGCTGACATCAATAACATAGAACGTTGTATGTACAACAT
GCCAGAATGCAGTGCGTCTTCatattataagaaaattttgaaagacccag
acccaaatgatgtTTATGGAGAACAGGATGAGCTTTGGGACGACGAGAAT
TTTATACCACCCGGTTTTGCCACTGGTCGAGTTTTACCAACTCATAAAGA
GTTAACCACAAGTGATAATAATTCTGTATTTTCATAGACGCATCAACAAA
ATTtagtataaaattttaaaattcatatttttgtgTAAGATTTTATTTGG
GtcttctaaactttttgaatcTCTCAAGTTGTCAATTTAAAATGTTAAAT
GTATAaggaaattgtaaattttttaaaaatatatatacaatttttctttt
cctgctTTAGTTTTTAGCTCGAATACTTATGTTTTACTTTTGCCATTGTT
TTTACACAacaccttttttttaaatgtttttagcaAGAAATGGGTATCAC
AGTTTTATATATTATCATGTATTATATGAATTATGCATATAAgtttaaat
tgtaaattttaaaGCATTGATATAGAGGAGATTATAATTGTAAATTAAAT
TGTAATCAGCAcacaagtttttattttttttaagattacTTTTTTGAGAA
CAACAATCTACTAAGCTACACCCAGGCTGtaaacttttattttgatattt
taggtTTCTGGTTTACCGCCTGGCCTATCTAAAGCGATTTGCATTCCAAT
ATCGGTACTGTGCCTGTCTAGATTTTTTCGAAGCTGAGTCGATGTAATTT
TGTAACTTACCTACATACATTTATGATTAAATTTGTTCGTTAACTTTGAA
TTTTAACCGTTATTGTGCCTGtctagattttttcaaagctgaGTCAATGT
AATAATTGTAAGATACATACATTTATGATTAAATTAGTTTGTTAACTTTG
AATTTTAACCGTTTTTATACATATGTTATATCACCATTAAGTAATTTCTG
AT
Run BLAST on NCBI

protein sequence of TCONS_00004428-protein

>TCONS_00004428-protein ID=TCONS_00004428-protein|Name=TCONS_00004428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MNNESSEKLINERTPLKKSVSFDSQTRAPSHILNINNKMNGTRKRAQSLR
DMASSKSDEIVSGVRVKSNKRASKRKPTDHRLVEKNGKRNVKSRHLPRDR
YLQDIFTTIIDAKWKWMLVVFTLFYLGSWLAVGFLWWLILISHGEKCFTN
VTNFTEAFLMSIETSVTIGYGTRQITSECPQAVLLLIIQASLSCLTDAVI
MGLIFTKVARPGKRQSTIVFSEKAVVNKKDDKYCLMFKIADVRKRQLVEC
HVRLHLFRRYKTLEGQFLTQQDQLRVGMDWYNIRDDSDRLFLMTPCNVVH
VIDRKSPFYHISKEKLMASDWELVVILEGIVEATGCTLQTRTSYLADEVI
WGYDFVEMADDWTEDEGILYNLADINNIERCMYNMPECSASSYYKKILKD
PDPNDVYGEQDELWDDENFIPPGFATGRVLPTHKELTTSDNNSVFS
Run BLAST on NCBI

transcript from alignment at sc0000044:701936..705382-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004428 ID=TCONS_00004428|Name=TCONS_00004428|organism=Clytia hemisphaerica|type=transcript|length=3447bp|location=Sequence derived from alignment at sc0000044:701936..705382- (Clytia hemisphaerica)
ATCTTTTAAGTTACAATGGTATGATGGTTGAAATTGATAGTGAAATGTTG
TGTTCTTTGTACATTCAAATTTTTTTTTTAGATATGAGACTGCAAAATGA
ATAATGAAAGTAGTGAAAAATTAATTAATGAGCGTACACCTCTAAAAAAA
TCTGTCAGTTTTGACAGTCAGACTCGTGCTCCAAGTCACATTCTTAACAT
TAATAACAAAATGAATGGAACAAGAAAACGAGCCCAAAGTTTAAGAGATA
TGGCAAGTTCAAAAAGTGATGAAATTGTCAGTGGCGTTCGAGTAAAATCA
AACAAAAGAGCCTCCAAAAGAAAGCCCACTGATCATCGTCTTGTTGAAAA
GAACGGTAAAAGAAATGTCAAATCTAGACATTTACCACGTGATCGTTATC
TTCAAGATATTTTTACAACAATTATTGATGCAAAATGGAAATGGATGCTG
GTTGTCTTCACCTTGTTTTATCTTGGTTTGTATCATATTATACCTTTTTA
TTACCTTACTTTTACCTTTCTAAGTACATATTTGTGGTCACGGGGGAGAT
TTCCTAATAAACTCATGAAAACTAATCAAACCTTCTTAGGTCAAATGTTT
CCTTAACTTATTTACCTATTTTTGCTAGTCAGTTAACCCTATTCATCCTA
GGCTTTTAAGGGCGGTTCAAAACTAGGGGGGGGGGGCTTTTCCTGTACCA
CCCCTTTAAACTTTTGATCCAGTGGGTCTTTTTGGATGAAATTTGGCACA
CAAGATCCTTGTCACATAAGGCAACTTTTGACGAAAAATCTTTTTGATGG
ACGTTACTCGTCATGCCCAAAGTGAGCAAAAACTGAAAATTTCCTTTGTT
CTTATAAATAGCTATTGTATTCTAACAAATGCTTTAGAAAAAAGTTACTT
GAGTCTAAAATGCTTATTTTATCCTAAATATTCAATAAATTACGCTTTAA
ACAATATATATCTGACATAAAAAATAAATTTGTATTGGAAAAGTGTCAAT
TTTTGTGACACTTTTTTTTTAGTAATGTCATCATGCTCATAATGTCATCA
TGCTCAAGGTGTCAAATTTTTTATTTATTTTGAAGCTAAATAAAAGTTAG
GAATTTACAGAAAATTTCATGGCAAAAACTCTATTATTTCAGGAGCTATT
ACCATTAATCTGACCTCCACCCCCCTAGGACGAATAGGGTTGAGAGAATA
TGAAAACTTATTCTTCATAAACAGAACAACGTTCATAACAACATTTCATC
ATTATGTTGCATCTATCTCTTTTTGATAATTCTTGACTTGAATGATGGTA
GGTTAATCTTTTTTCAAATTAGGATCATGGCTAGCTGTGGGTTTTCTATG
GTGGCTAATACTCATTTCACACGGTGAAAAGTGTTTTACAAACGTAACAA
ATTTCACAGAAGCTTTTTTGATGTCAATAGAGACATCAGTTACAATTGGT
TACGGTACCAGGCAGATCACTTCGGAATGTCCTCAGGCAGTTCTACTTTT
AATCATTCAAGCGTCACTCAGTTGTTTAACAGATGCAGTCATCATGGGTT
TAATTTTCACCAAGGTGGCACGTCCAGGAAAGCGACAGAGTACCATAGTT
TTTTCAGAGAAAGCAGTTGTTAACAAAAAGGATGATAAATACTGTCTCAT
GTTTAAAATTGCTGATGTACGAAAACGCCAACTTGTTGAGTGTCATGTGC
GGTTGCATCTATTTCGAAGATATAAAACTTTAGAGGGTCAATTCCTCACC
CAACAAGACCAACTGCGAGTGGGTATGGACTGGTATAACATTCGTGATGA
CAGTGATAGACTCTTTTTAATGACACCTTGTAATGTAGTACATGTAATAG
ACAGGAAAAGTCCTTTTTATCATATTTCTAAAGAGAAGTTGATGGCTTCA
GATTGGGAATTGGTTGTCATTTTAGAAGGTATTGTTGAAGCAACAGGTTG
CACATTACAAACACGTACATCTTATTTAGCTGATGAAGTTATTTGGGGAT
ACGACTTTGTTGAAATGGTATGTTTGCCCTGTTTTTATATATTTTATAAG
GTTTATTATGTCCCGTCTCGTCTTTCTCTTTGATAATTCCGTTGAAAAAA
AGGAAACTTTAAATTACCTGTCATAAGAAGAAGGAGTTCTTTCTATTTCA
ATACCATAATTATCAATGTTTCTTTCTAGTGTGCAAAAGTTTCTCTCAAA
CTGGCAAGTAGTATAATGAAAAAGTGTAAATGGTTCTAATGAGACTCTAG
ACTGCTAAATAAAGGAGCAGGCATCCTCGTAAATAAAAGCCATTCATATT
TTGTTTCTCTTGCATTGACTACACAATCTCAAACTTAAAATTCATGCAAT
AGATGAGTTAAGGGCTAAGCATTTGCTACTTTCAGTTTTATAATATTTCA
TAATTTTCATCTCAGGCTGATGATTGGACAGAGGACGAAGGTATTCTTTA
CAATTTGGCTGACATCAATAACATAGAACGTTGTATGTACAACATGCCAG
AATGCAGTGCGTCTTCATATTATAAGAAAATTTTGAAAGACCCAGACCCA
AATGATGTTTATGGAGAACAGGATGAGCTTTGGGACGACGAGAATTTTAT
ACCACCCGGTTTTGCCACTGGTCGAGTTTTACCAACTCATAAAGAGTTAA
CCACAAGTGATAATAATTCTGTATTTTCATAGACGCATCAACAAAATTTA
GTATAAAATTTTAAAATTCATATTTTTGTGTAAGATTTTATTTGGGTCTT
CTAAACTTTTTGAATCTCTCAAGTTGTCAATTTAAAATGTTAAATGTATA
AGGAAATTGTAAATTTTTTAAAAATATATATACAATTTTTCTTTTCCTGC
TTTAGTTTTTAGCTCGAATACTTATGTTTTACTTTTGCCATTGTTTTTAC
ACAACACCTTTTTTTTAAATGTTTTTAGCAAGAAATGGGTATCACAGTTT
TATATATTATCATGTATTATATGAATTATGCATATAAGTTTAAATTGTAA
ATTTTAAAGCATTGATATAGAGGAGATTATAATTGTAAATTAAATTGTAA
TCAGCACACAAGTTTTTATTTTTTTTAAGATTACTTTTTTGAGAACAACA
ATCTACTAAGCTACACCCAGGCTGTAAACTTTTATTTTGATATTTTAGGT
TTCTGGTTTACCGCCTGGCCTATCTAAAGCGATTTGCATTCCAATATCGG
TACTGTGCCTGTCTAGATTTTTTCGAAGCTGAGTCGATGTAATTTTGTAA
CTTACCTACATACATTTATGATTAAATTTGTTCGTTAACTTTGAATTTTA
ACCGTTATTGTGCCTGTCTAGATTTTTTCAAAGCTGAGTCAATGTAATAA
TTGTAAGATACATACATTTATGATTAAATTAGTTTGTTAACTTTGAATTT
TAACCGTTTTTATACATATGTTATATCACCATTAAGTAATTTCTGAT

Coding sequence (CDS) from alignment at sc0000044:701936..705382-

>TCONS_00004428 ID=TCONS_00004428|Name=TCONS_00004428|organism=Clytia hemisphaerica|type=CDS|length=4023bp|location=Sequence derived from alignment at sc0000044:701936..705382- (Clytia hemisphaerica)
GCTGATGATTGGACAGAGGACGAAGGTATTCTTTACAATTTGGCTGACAT
CAATAACATAGAACGTTGTATGTACAACATGCCAGAATGCAGTGCGTCTT
CATATTATAAGAAAATTTTGAAAGACCCAGACCCAAATGATGTTTATGGA
GAACAGGATGAGCTTTGGGACGACGAGAATTTTATACCACCCGGTTTTGC
CACTGGTCGAGTTTTACCAACTCATAAAGAGTTAACCACAAGTGATAATA
ATTCTGTATTTTCATAGGATCATGGCTAGCTGTGGGTTTTCTATGGTGGC
TAATACTCATTTCACACGGTGAAAAGTGTTTTACAAACGTAACAAATTTC
ACAGAAGCTTTTTTGATGTCAATAGAGACATCAGTTACAATTGGTTACGG
TACCAGGCAGATCACTTCGGAATGTCCTCAGGCAGTTCTACTTTTAATCA
TTCAAGCGTCACTCAGTTGTTTAACAGATGCAGTCATCATGGGTTTAATT
TTCACCAAGGTGGCACGTCCAGGAAAGCGACAGAGTACCATAGTTTTTTC
AGAGAAAGCAGTTGTTAACAAAAAGGATGATAAATACTGTCTCATGTTTA
AAATTGCTGATGTACGAAAACGCCAACTTGTTGAGTGTCATGTGCGGTTG
CATCTATTTCGAAGATATAAAACTTTAGAGGGTCAATTCCTCACCCAACA
AGACCAACTGCGAGTGGGTATGGACTGGTATAACATTCGTGATGACAGTG
ATAGACTCTTTTTAATGACACCTTGTAATGTAGTACATGTAATAGACAGG
AAAAGTCCTTTTTATCATATTTCTAAAGAGAAGTTGATGGCTTCAGATTG
GGAATTGGTTGTCATTTTAGAAGGTATTGTTGAAGCAACAGGTTGCACAT
TACAAACACGTACATCTTATTTAGCTGATGAAGTTATTTGGGGATACGAC
TTTGTTGAAATGATGAATAATGAAAGTAGTGAAAAATTAATTAATGAGCG
TACACCTCTAAAAAAATCTGTCAGTTTTGACAGTCAGACTCGTGCTCCAA
GTCACATTCTTAACATTAATAACAAAATGAATGGAACAAGAAAACGAGCC
CAAAGTTTAAGAGATATGGCAAGTTCAAAAAGTGATGAAATTGTCAGTGG
CGTTCGAGTAAAATCAAACAAAAGAGCCTCCAAAAGAAAGCCCACTGATC
ATCGTCTTGTTGAAAAGAACGGTAAAAGAAATGTCAAATCTAGACATTTA
CCACGTGATCGTTATCTTCAAGATATTTTTACAACAATTATTGATGCAAA
ATGGAAATGGATGCTGGTTGTCTTCACCTTGTTTTATCTTGGCTGATGAT
TGGACAGAGGACGAAGGTATTCTTTACAATTTGGCTGACATCAATAACAT
AGAACGTTGTATGTACAACATGCCAGAATGCAGTGCGTCTTCATATTATA
AGAAAATTTTGAAAGACCCAGACCCAAATGATGTTTATGGAGAACAGGAT
GAGCTTTGGGACGACGAGAATTTTATACCACCCGGTTTTGCCACTGGTCG
AGTTTTACCAACTCATAAAGAGTTAACCACAAGTGATAATAATTCTGTAT
TTTCATAGGATCATGGCTAGCTGTGGGTTTTCTATGGTGGCTAATACTCA
TTTCACACGGTGAAAAGTGTTTTACAAACGTAACAAATTTCACAGAAGCT
TTTTTGATGTCAATAGAGACATCAGTTACAATTGGTTACGGTACCAGGCA
GATCACTTCGGAATGTCCTCAGGCAGTTCTACTTTTAATCATTCAAGCGT
CACTCAGTTGTTTAACAGATGCAGTCATCATGGGTTTAATTTTCACCAAG
GTGGCACGTCCAGGAAAGCGACAGAGTACCATAGTTTTTTCAGAGAAAGC
AGTTGTTAACAAAAAGGATGATAAATACTGTCTCATGTTTAAAATTGCTG
ATGTACGAAAACGCCAACTTGTTGAGTGTCATGTGCGGTTGCATCTATTT
CGAAGATATAAAACTTTAGAGGGTCAATTCCTCACCCAACAAGACCAACT
GCGAGTGGGTATGGACTGGTATAACATTCGTGATGACAGTGATAGACTCT
TTTTAATGACACCTTGTAATGTAGTACATGTAATAGACAGGAAAAGTCCT
TTTTATCATATTTCTAAAGAGAAGTTGATGGCTTCAGATTGGGAATTGGT
TGTCATTTTAGAAGGTATTGTTGAAGCAACAGGTTGCACATTACAAACAC
GTACATCTTATTTAGCTGATGAAGTTATTTGGGGATACGACTTTGTTGAA
ATGATGAATAATGAAAGTAGTGAAAAATTAATTAATGAGCGTACACCTCT
AAAAAAATCTGTCAGTTTTGACAGTCAGACTCGTGCTCCAAGTCACATTC
TTAACATTAATAACAAAATGAATGGAACAAGAAAACGAGCCCAAAGTTTA
AGAGATATGGCAAGTTCAAAAAGTGATGAAATTGTCAGTGGCGTTCGAGT
AAAATCAAACAAAAGAGCCTCCAAAAGAAAGCCCACTGATCATCGTCTTG
TTGAAAAGAACGGTAAAAGAAATGTCAAATCTAGACATTTACCACGTGAT
CGTTATCTTCAAGATATTTTTACAACAATTATTGATGCAAAATGGAAATG
GATGCTGGTTGTCTTCACCTTGTTTTATCTTGGCTGATGATTGGACAGAG
GACGAAGGTATTCTTTACAATTTGGCTGACATCAATAACATAGAACGTTG
TATGTACAACATGCCAGAATGCAGTGCGTCTTCATATTATAAGAAAATTT
TGAAAGACCCAGACCCAAATGATGTTTATGGAGAACAGGATGAGCTTTGG
GACGACGAGAATTTTATACCACCCGGTTTTGCCACTGGTCGAGTTTTACC
AACTCATAAAGAGTTAACCACAAGTGATAATAATTCTGTATTTTCATAGG
ATCATGGCTAGCTGTGGGTTTTCTATGGTGGCTAATACTCATTTCACACG
GTGAAAAGTGTTTTACAAACGTAACAAATTTCACAGAAGCTTTTTTGATG
TCAATAGAGACATCAGTTACAATTGGTTACGGTACCAGGCAGATCACTTC
GGAATGTCCTCAGGCAGTTCTACTTTTAATCATTCAAGCGTCACTCAGTT
GTTTAACAGATGCAGTCATCATGGGTTTAATTTTCACCAAGGTGGCACGT
CCAGGAAAGCGACAGAGTACCATAGTTTTTTCAGAGAAAGCAGTTGTTAA
CAAAAAGGATGATAAATACTGTCTCATGTTTAAAATTGCTGATGTACGAA
AACGCCAACTTGTTGAGTGTCATGTGCGGTTGCATCTATTTCGAAGATAT
AAAACTTTAGAGGGTCAATTCCTCACCCAACAAGACCAACTGCGAGTGGG
TATGGACTGGTATAACATTCGTGATGACAGTGATAGACTCTTTTTAATGA
CACCTTGTAATGTAGTACATGTAATAGACAGGAAAAGTCCTTTTTATCAT
ATTTCTAAAGAGAAGTTGATGGCTTCAGATTGGGAATTGGTTGTCATTTT
AGAAGGTATTGTTGAAGCAACAGGTTGCACATTACAAACACGTACATCTT
ATTTAGCTGATGAAGTTATTTGGGGATACGACTTTGTTGAAATGATGAAT
AATGAAAGTAGTGAAAAATTAATTAATGAGCGTACACCTCTAAAAAAATC
TGTCAGTTTTGACAGTCAGACTCGTGCTCCAAGTCACATTCTTAACATTA
ATAACAAAATGAATGGAACAAGAAAACGAGCCCAAAGTTTAAGAGATATG
GCAAGTTCAAAAAGTGATGAAATTGTCAGTGGCGTTCGAGTAAAATCAAA
CAAAAGAGCCTCCAAAAGAAAGCCCACTGATCATCGTCTTGTTGAAAAGA
ACGGTAAAAGAAATGTCAAATCTAGACATTTACCACGTGATCGTTATCTT
CAAGATATTTTTACAACAATTATTGATGCAAAATGGAAATGGATGCTGGT
TGTCTTCACCTTGTTTTATCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002477XLOC_002477Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004428-proteinTCONS_00004428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004428-exon-sc0000044-1575043694:704908..705382TCONS_00004428-exon-sc0000044-1575043694:704908..705382Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1575043694:703366..704060TCONS_00004428-exon-sc0000044-1575043694:703366..704060Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1575043694:701936..702967TCONS_00004428-exon-sc0000044-1575043694:701936..702967Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1510915933:704908..705382TCONS_00004428-exon-sc0000044-1510915933:704908..705382Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1510915933:703366..704060TCONS_00004428-exon-sc0000044-1510915933:703366..704060Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1510915933:701936..702967TCONS_00004428-exon-sc0000044-1510915933:701936..702967Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1491911889:704908..705382TCONS_00004428-exon-sc0000044-1491911889:704908..705382Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1491911889:703366..704060TCONS_00004428-exon-sc0000044-1491911889:703366..704060Clytia hemisphaericaexon
TCONS_00004428-exon-sc0000044-1491911889:701936..702967TCONS_00004428-exon-sc0000044-1491911889:701936..702967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:701936..705382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.50896	7.75945	39.4643	43.3422	7.44182	6.0893	6.75144	6.79198	5.52026	5.74147	5.78923	3.49737	4.78296	3.81143	2.83027	3.34104	3.35418	3.17769	3.08446	3.28707	3.01196	3.1985	5.28631	6.32763	7.72138	8.39219	3.90543	2.24029	8.3576	7.89103
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016449K_chnl_inward-rec_Kir
IPR013518K_chnl_inward-rec_Kir_cyto
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005242inward rectifier potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005242 inward rectifier potassium channel activity
Blast
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BLAST of TCONS_00004428 vs. Swiss-Prot (Human)
Match: KCNJ2 (Inward rectifier potassium channel 2 OS=Homo sapiens GN=KCNJ2 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.037e-79
Identity = 147/380 (38.68%), Postives = 218/380 (57.37%), Query Frame = 1 
Query:  307 RASKRKPTDHRLVEKNGKRNVKSRHLPR--DRYLQDIFTTIIDAKWKWMLVVFTLFYLGSWLAVGFLWWLILISHGE--------KCFTNVTNFTEAFLMSIETSVTIGYGTRQITSECPQAVLLLIIQASLSCLTDAVIMGLIFTKVARPGKRQSTIVFSEKAVVNKKDDKYCLMFKIADVRKRQLVECHVRLHLFRRYKTLEGQFLT-QQDQLRVGMDWYNIRDDSDRLFLMTPCNVVHVIDRKSPFYHISKEKLMASDWELVVILEGIVEATGCTLQTRTSYLADEVIWGYDFVEMADDWTEDEGILYNLADINNIERCMY-------NMPECSASSYYKK--ILKDPDP----NDVYGEQDELWDDENFIPPGFAT 1374
            +   R+    R V+K+G  NV+  ++     RYL DIFTT +D +W+WMLV+F L ++ SWL  G ++WLI + HG+         C + V +FT AFL SIET  TIGYG R +T ECP AV +++ Q+ + C+ DA I+G +  K+A+P KR  T+VFS  AV+  +D K CLM+++ ++RK  LVE HVR  L +   T EG+++   Q  + VG D        DR+FL++P  +VH ID  SP Y +SK+ +  +D+E+VVILEG+VEAT  T Q R+SYLA+E++WG+ +          E +L+       ++   +       N P CSA    +K  IL + +     N+V     E  D EN +P   +T
Sbjct:   36 KVHTRQQCRSRFVKKDGHCNVQFINVGEKGQRYLADIFTTCVDIRWRWMLVIFCLAFVLSWLFFGCVFWLIALLHGDLDASKEGKACVSEVNSFTAAFLFSIETQTTIGYGFRCVTDECPIAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFD-----SGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRY----------EPVLFEEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYILSNANSFCYENEVALTSKEEDDSENGVPESTST 400
The following BLAST results are available for this feature:
BLAST of TCONS_00004428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNJ22.037e-7938.68Inward rectifier potassium channel 2 OS=Homo sapie... [more]
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