TCONS_00001979-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001979-protein
Unique Name	TCONS_00001979-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1473

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001979-protein ID=TCONS_00001979-protein|Name=TCONS_00001979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1473bp
MVSTPQIKIKENVAGSTAKKQKSEDIDLACKSSKNKKRLSAEKKNSMPSP
ELNSSLQLSQWGLPEVILENYKAKGINKMFEWQKECLLQDQVLDGANLIY
SAPTSAGKTLVAEILMLKRVLETEKKAIYILPFVSVAREKMYSLRNQFEE
AGINVGGFMGNETPPGGLTNIDIAICTIERANSLINRLMEEDKLSLLGSI
VIDEMHMIGDPSRGYLLELLLTKIRFLMAKNATNVGENNESSSNHDNGIQ
IIGMSATLPNLDMMARWLDARFYVTDYRPVPLDEYLKTSKTIYDCADTVV
RTISPEDTIKGDDDDVINLCLETMRDTNSVLIFCPTKNWCEKLSISIANY
LANNVLSKESDTENIFDKEGLQDVLSELQQTPAGLDPSLEKVVSSGVSYH
HAGLTMDERDIIEGAFRRGVLKIIIATSTLSSGVNLPARRVIIRSPMFHG
KLIDALVYKQMVGRAGRKGVDTQGESILICKPNEKQKSLAMMTSLLKPVY
SCLLDASRTMNRALLEVIAGGVAVSPPDVELYAKSTYLNTCLAVQTGRHP
EELICTSMKFLLENDFIKLRFEKNKDDVNEKSKEQYFPSQLGTATMASSM
KPDEAIIVYTELQKARRNFCLENELHIIYQVTPTSICDQWPDLDWYTYYN
IWERLSAQCKHVGEMIGVKESFLGRAMQNRVSCVTAEQKRVMRIHRRFYG
ALVLNDLCNEVPMSDVSRKYKVHKGLLQSLQNSAATYAGMMTVFCKKLGW
SCLEVLLEQFQSRLSFGVCRDLCNLVRISLLNRFTARLFYQNGFQTVSAI
ANASEKEISKLLRESTPFYSNKLKGKDAEMVGKSVPKCLWLSGKEGLSEQ
EAGRLIIDEAKRILAADAQALGIPIGQLNLSSKNSTISKSSSSSSGKKRR
SSLTKSTIKRRNRKRASAEKITPLRSSKRLSPEQRSGERVDSNSKVGTQL
AYALQKSTSQSPSPVLREIQNLSTQNLSRNLSLADNDMSLFQENQVINTA
QKMVENLSNDSLLFGESLPNILGKENQSDIKMTTDILIEQLKDTVLHNQL
SDKSETQDSLFLIPNQDFNSFSTKNQDQTMSEQTPNLSEDRILNTGNFCD
KLHTQDSLFLNDKIPSFSTHTVNKTRDIVTKDEPESRTIAECELNHQEQQ
GSVNSKKTKRKTSDYLESSDSLLLLSDSALKPKEKSPILIESPKTELSVT
TPSPNLSLRLSTTDEALDTFPKILPPMKLHSQFNDALTGEASTLQRNLTS
VTSPEVDLFDQNIESNDNSGDLFESTELFTKNSTSQATERVTPQETNLNE
SASNEFLIIDVASSKTLFLTFIQEWKAKSSFTVAFSCETHKPTSQTTSSK
IGRPLRSARDVSTTSKPSAMSSTSNRLLYTRDDLQLTGLAICWGKKDSYY
ISLQEDGVRHNELDDTALPPDVCQELPLPVRLKSIQSVLNQHASSTIMGF
DLKEQLKIIYELCDTLLXSLVLT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001020	XLOC_001020	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001979	TCONS_00001979	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014014	RNA_helicase_DEAD_Q_motif
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 75..285 e-value: 8.6E-18 score: 75.1
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 89..276 score: 19.506
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 387..469 e-value: 9.7E-17 score: 71.6
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 322..469 e-value: 3.0E-10 score: 40.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 315..515 score: 13.452
None	No IPR available	GENE3D	1.10.150.20		coord: 769..871 e-value: 1.0E-6 score: 28.1
None	No IPR available	GENE3D	3.40.50.300		coord: 13..291 e-value: 4.1E-30 score: 104.2
None	No IPR available	GENE3D	3.40.50.300		coord: 301..590 e-value: 2.2E-25 score: 88.6
None	No IPR available	CDD	cd00046	DEXDc	coord: 102..258 e-value: 2.20969E-11 score: 62.3548
None	No IPR available	CDD	cd00079	HELICc	coord: 313..479 e-value: 2.08264E-12 score: 65.3368
None	No IPR available	SUPERFAMILY	158702	Sec63 N-terminal domain-like	coord: 690..812
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 91..259 e-value: 2.0E-16 score: 60.2
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 56..84 score: 6.963
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 295..349 coord: 91..261 coord: 393..483

Blast

[Close]

BLAST of TCONS_00001979-protein vs. Swiss-Prot (Human)
Match: DPOLQ (DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2)

HSP 1 Score: 843.188 bits (2177), Expect = 0.000e+0
Identity = 428/906 (47.24%), Postives = 621/906 (68.54%), Query Frame = 0

Query:   36 KKRLSAEKKNSMPSPELNSSLQLSQWGLPEVILENYKAKGINKMFEWQKECLLQDQVLDGANLIYSAPTSAGKTLVAEILMLKRVLETEKKAIYILPFVSVAREKMYSLRNQFEEAGINVGGFMGNETPPGGLTNIDIAICTIERANSLINRLMEEDKLSLLGSIVIDEMHMIGDPSRGYLLELLLTKIRFLMAKNATNVGENNESSSNHDNGIQIIGMSATLPNLDMMARWLDARFYVTDYRPVPLDEYLKTSKTIYDCADTVVRTISPEDTIKGDDDDVINLCLETMRDTNSVLIFCPTKNWCEKLSISIA------NYLANNVLSKESDTENIFDKEGLQDVLSELQQTPAGLDPSLEKVVSSGVSYHHAGLTMDERDIIEGAFRRGVLKIIIATSTLSSGVNLPARRVIIRSPMFHGKLIDALVYKQMVGRAGRKGVDTQGESILICKPNEKQKSLAMMTSLLKPVYSCLL-----DASRTMNRALLEVIAGGVAVSPPDVELYAKSTYLNTCL-----AVQTGRHPEEL--ICTSMKFLLENDFIKLRFEKNKDDVNEKSKEQYFPSQLGTATMASSMKPDEAIIVYTELQKARRNFCLENELHIIYQVTPTSICDQWPDLDWYTYYNIWERLSAQCKHVGEMIGVKESFLGRAMQNRVSCVTAEQKRVMRIHRRFYGALVLNDLCNEVPMSDVSRKYKVHKGLLQSLQNSAATYAGMMTVFCKKLGWSCLEVLLEQFQSRLSFGVCRDLCNLVRISLLNRFTARLFYQNGFQTVSAIANASEKEISKLLRESTPFYSNK--LKGKDAEMVGKSVPKCLWLSGKEGLSEQEAGRLIIDEAKRILAADAQALGI---PIGQLNLSSKNSTISKSSSSSSGKKRRS-SLTKSTIKRRNRKRAS 917
            K   + E K ++P  E +  L L+ WGLP+ +LE Y + G+ KMFEWQ ECLL  QVL+G NL+YSAPTSAGKTLVAE+L+LKRVLE  KKA++ILPFVSVA+EK Y L++ F+E GI V G+MG+ +P    +++DIA+CTIERAN LINRL+EE+K+ LLG +V+DE+HM+GD  RGYLLELLLTKI ++  K+A+      + +S+  N +QI+GMSATLPNL+++A WL+A  Y TD+RPVPL E +K   +IYD +  +VR   P   +KGD+D V++LC ET+ D +SVL+FCP+K WCEKL+  IA      ++ A  ++        I +++ L +V+ +L++ P+GLD  L+K V  GV++HHAGLT +ERDIIEGAFR+G+++++ ATSTLSSGVNLPARRVIIR+P+F G+ +D L YKQMVGRAGRKGVDT GESILICK +EK K +A++   LKPV SCL      + + +M RA+LE+I GGVA +  D+  YA  T+L   +      +Q  +   +L  I   + +LLEN+FI     ++ +  +    + Y P+ LG+AT++SS+ P + + ++ +LQ+A + F LEN+LHI+Y VTP  + + W  +DWY ++ +WE+L    K V E++GV+E FL R ++ +V   T  Q R M IH+RF+ +LVL DL +EVP+ ++++KY  ++G +QSLQ SAA YAGM+TVF  +LGW  +E+LL QFQ RL+FG+ R+LC+LVR+SLLN   AR+ Y +GF TV+ +A A+  E+  +L+ + PF S +  +  ++  +  +   + +W++G++GL+E+EA  LI++EA+ IL  D   +G+   P   L+    +ST S + S S  K+    S TKS+ K+   K  S
Sbjct:   50 KAAAAGECKPTVPDYERDK-LLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASC---QADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFI-----QSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTP--MFEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFKSARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH----SSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKS 940

HSP 2 Score: 90.5077 bits (223), Expect = 5.551e-18
Identity = 50/159 (31.45%), Postives = 88/159 (55.35%), Query Frame = 0

Query: 1308 IIDVASSKTLFLTFIQEWKAKSSFTVAFSCETHKPTSQTTSSKIGRPLRSARDVSTTSKPSAMSSTSNRL-LYTRDDLQLTGLAICWGKKDSYYISLQEDGVRHNELDDTALPPDVCQELPLPVRLKSIQSVLNQHASS--TIMGFDLKEQLKIIYELC 1463
            IIDVAS + LF TFI+EW+ K  F+++ +CE  +  + + ++ IG   + A      S P  +    +   +   DD  + GLA+CWG +D+YY SLQ++  +H+E+  + +PP +   L L  R+  +QS L + +    +++ +D  +  KI+   C
Sbjct: 1827 IIDVASDQNLFQTFIKEWRCKKRFSISLACEKIRSLTSSKTATIGSRFKQA------SSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQ-KHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSC 1978

The following BLAST results are available for this feature:

BLAST of TCONS_00001979-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001979-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPOLQ	5.551e-18	47.24	DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 ...	[more]

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TCONS_00001979-protein (polypeptide) - C. hemisphaerica