TCONS_00001979-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001979-protein
Unique NameTCONS_00001979-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1473

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001979-protein ID=TCONS_00001979-protein|Name=TCONS_00001979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1473bp
MVSTPQIKIKENVAGSTAKKQKSEDIDLACKSSKNKKRLSAEKKNSMPSP
ELNSSLQLSQWGLPEVILENYKAKGINKMFEWQKECLLQDQVLDGANLIY
SAPTSAGKTLVAEILMLKRVLETEKKAIYILPFVSVAREKMYSLRNQFEE
AGINVGGFMGNETPPGGLTNIDIAICTIERANSLINRLMEEDKLSLLGSI
VIDEMHMIGDPSRGYLLELLLTKIRFLMAKNATNVGENNESSSNHDNGIQ
IIGMSATLPNLDMMARWLDARFYVTDYRPVPLDEYLKTSKTIYDCADTVV
RTISPEDTIKGDDDDVINLCLETMRDTNSVLIFCPTKNWCEKLSISIANY
LANNVLSKESDTENIFDKEGLQDVLSELQQTPAGLDPSLEKVVSSGVSYH
HAGLTMDERDIIEGAFRRGVLKIIIATSTLSSGVNLPARRVIIRSPMFHG
KLIDALVYKQMVGRAGRKGVDTQGESILICKPNEKQKSLAMMTSLLKPVY
SCLLDASRTMNRALLEVIAGGVAVSPPDVELYAKSTYLNTCLAVQTGRHP
EELICTSMKFLLENDFIKLRFEKNKDDVNEKSKEQYFPSQLGTATMASSM
KPDEAIIVYTELQKARRNFCLENELHIIYQVTPTSICDQWPDLDWYTYYN
IWERLSAQCKHVGEMIGVKESFLGRAMQNRVSCVTAEQKRVMRIHRRFYG
ALVLNDLCNEVPMSDVSRKYKVHKGLLQSLQNSAATYAGMMTVFCKKLGW
SCLEVLLEQFQSRLSFGVCRDLCNLVRISLLNRFTARLFYQNGFQTVSAI
ANASEKEISKLLRESTPFYSNKLKGKDAEMVGKSVPKCLWLSGKEGLSEQ
EAGRLIIDEAKRILAADAQALGIPIGQLNLSSKNSTISKSSSSSSGKKRR
SSLTKSTIKRRNRKRASAEKITPLRSSKRLSPEQRSGERVDSNSKVGTQL
AYALQKSTSQSPSPVLREIQNLSTQNLSRNLSLADNDMSLFQENQVINTA
QKMVENLSNDSLLFGESLPNILGKENQSDIKMTTDILIEQLKDTVLHNQL
SDKSETQDSLFLIPNQDFNSFSTKNQDQTMSEQTPNLSEDRILNTGNFCD
KLHTQDSLFLNDKIPSFSTHTVNKTRDIVTKDEPESRTIAECELNHQEQQ
GSVNSKKTKRKTSDYLESSDSLLLLSDSALKPKEKSPILIESPKTELSVT
TPSPNLSLRLSTTDEALDTFPKILPPMKLHSQFNDALTGEASTLQRNLTS
VTSPEVDLFDQNIESNDNSGDLFESTELFTKNSTSQATERVTPQETNLNE
SASNEFLIIDVASSKTLFLTFIQEWKAKSSFTVAFSCETHKPTSQTTSSK
IGRPLRSARDVSTTSKPSAMSSTSNRLLYTRDDLQLTGLAICWGKKDSYY
ISLQEDGVRHNELDDTALPPDVCQELPLPVRLKSIQSVLNQHASSTIMGF
DLKEQLKIIYELCDTLLXSLVLT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001020XLOC_001020Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001979TCONS_00001979Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 75..285
e-value: 8.6E-18
score: 75.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 89..276
score: 19.506
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 387..469
e-value: 9.7E-17
score: 71.6
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 322..469
e-value: 3.0E-10
score: 40.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 315..515
score: 13.452
NoneNo IPR availableGENE3D1.10.150.20coord: 769..871
e-value: 1.0E-6
score: 28.1
NoneNo IPR availableGENE3D3.40.50.300coord: 13..291
e-value: 4.1E-30
score: 104.2
NoneNo IPR availableGENE3D3.40.50.300coord: 301..590
e-value: 2.2E-25
score: 88.6
NoneNo IPR availableCDDcd00046DEXDccoord: 102..258
e-value: 2.20969E-11
score: 62.3548
NoneNo IPR availableCDDcd00079HELICccoord: 313..479
e-value: 2.08264E-12
score: 65.3368
NoneNo IPR availableSUPERFAMILY158702Sec63 N-terminal domain-likecoord: 690..812
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 91..259
e-value: 2.0E-16
score: 60.2
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 56..84
score: 6.963
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 295..349
coord: 91..261
coord: 393..483

Blast
BLAST of TCONS_00001979-protein vs. Swiss-Prot (Human)
Match: DPOLQ (DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2)

HSP 1 Score: 843.188 bits (2177), Expect = 0.000e+0
Identity = 428/906 (47.24%), Postives = 621/906 (68.54%), Query Frame = 0
Query:   36 KKRLSAEKKNSMPSPELNSSLQLSQWGLPEVILENYKAKGINKMFEWQKECLLQDQVLDGANLIYSAPTSAGKTLVAEILMLKRVLETEKKAIYILPFVSVAREKMYSLRNQFEEAGINVGGFMGNETPPGGLTNIDIAICTIERANSLINRLMEEDKLSLLGSIVIDEMHMIGDPSRGYLLELLLTKIRFLMAKNATNVGENNESSSNHDNGIQIIGMSATLPNLDMMARWLDARFYVTDYRPVPLDEYLKTSKTIYDCADTVVRTISPEDTIKGDDDDVINLCLETMRDTNSVLIFCPTKNWCEKLSISIA------NYLANNVLSKESDTENIFDKEGLQDVLSELQQTPAGLDPSLEKVVSSGVSYHHAGLTMDERDIIEGAFRRGVLKIIIATSTLSSGVNLPARRVIIRSPMFHGKLIDALVYKQMVGRAGRKGVDTQGESILICKPNEKQKSLAMMTSLLKPVYSCLL-----DASRTMNRALLEVIAGGVAVSPPDVELYAKSTYLNTCL-----AVQTGRHPEEL--ICTSMKFLLENDFIKLRFEKNKDDVNEKSKEQYFPSQLGTATMASSMKPDEAIIVYTELQKARRNFCLENELHIIYQVTPTSICDQWPDLDWYTYYNIWERLSAQCKHVGEMIGVKESFLGRAMQNRVSCVTAEQKRVMRIHRRFYGALVLNDLCNEVPMSDVSRKYKVHKGLLQSLQNSAATYAGMMTVFCKKLGWSCLEVLLEQFQSRLSFGVCRDLCNLVRISLLNRFTARLFYQNGFQTVSAIANASEKEISKLLRESTPFYSNK--LKGKDAEMVGKSVPKCLWLSGKEGLSEQEAGRLIIDEAKRILAADAQALGI---PIGQLNLSSKNSTISKSSSSSSGKKRRS-SLTKSTIKRRNRKRAS 917
            K   + E K ++P  E +  L L+ WGLP+ +LE Y + G+ KMFEWQ ECLL  QVL+G NL+YSAPTSAGKTLVAE+L+LKRVLE  KKA++ILPFVSVA+EK Y L++ F+E GI V G+MG+ +P    +++DIA+CTIERAN LINRL+EE+K+ LLG +V+DE+HM+GD  RGYLLELLLTKI ++  K+A+      + +S+  N +QI+GMSATLPNL+++A WL+A  Y TD+RPVPL E +K   +IYD +  +VR   P   +KGD+D V++LC ET+ D +SVL+FCP+K WCEKL+  IA      ++ A  ++        I +++ L +V+ +L++ P+GLD  L+K V  GV++HHAGLT +ERDIIEGAFR+G+++++ ATSTLSSGVNLPARRVIIR+P+F G+ +D L YKQMVGRAGRKGVDT GESILICK +EK K +A++   LKPV SCL      + + +M RA+LE+I GGVA +  D+  YA  T+L   +      +Q  +   +L  I   + +LLEN+FI     ++ +  +    + Y P+ LG+AT++SS+ P + + ++ +LQ+A + F LEN+LHI+Y VTP  + + W  +DWY ++ +WE+L    K V E++GV+E FL R ++ +V   T  Q R M IH+RF+ +LVL DL +EVP+ ++++KY  ++G +QSLQ SAA YAGM+TVF  +LGW  +E+LL QFQ RL+FG+ R+LC+LVR+SLLN   AR+ Y +GF TV+ +A A+  E+  +L+ + PF S +  +  ++  +  +   + +W++G++GL+E+EA  LI++EA+ IL  D   +G+   P   L+    +ST S + S S  K+    S TKS+ K+   K  S
Sbjct:   50 KAAAAGECKPTVPDYERDK-LLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASC---QADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFI-----QSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTP--MFEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFKSARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH----SSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKS 940          

HSP 2 Score: 90.5077 bits (223), Expect = 5.551e-18
Identity = 50/159 (31.45%), Postives = 88/159 (55.35%), Query Frame = 0
Query: 1308 IIDVASSKTLFLTFIQEWKAKSSFTVAFSCETHKPTSQTTSSKIGRPLRSARDVSTTSKPSAMSSTSNRL-LYTRDDLQLTGLAICWGKKDSYYISLQEDGVRHNELDDTALPPDVCQELPLPVRLKSIQSVLNQHASS--TIMGFDLKEQLKIIYELC 1463
            IIDVAS + LF TFI+EW+ K  F+++ +CE  +  + + ++ IG   + A      S P  +    +   +   DD  + GLA+CWG +D+YY SLQ++  +H+E+  + +PP +   L L  R+  +QS L + +    +++ +D  +  KI+   C
Sbjct: 1827 IIDVASDQNLFQTFIKEWRCKKRFSISLACEKIRSLTSSKTATIGSRFKQA------SSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQ-KHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSC 1978          
The following BLAST results are available for this feature:
BLAST of TCONS_00001979-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLQ5.551e-1847.24DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 ... [more]
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