XLOC_045028 (gene) - C. hemisphaerica

Overview
NameXLOC_045028
Unique NameXLOC_045028
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_8:137833..142029-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045028 ID=XLOC_045028|Name=XLOC_045028|organism=Clytia hemisphaerica|type=gene|length=4197bp|location=Sequence derived from alignment at scaffold_8:137833..142029- (Clytia hemisphaerica)
GAACCAGTCACTTCTCGAACACTCAAAATCACAAGTCTGGGAAAACAACC
AAACCAGCCCTTATCCAAACCATCAATGGAAGGTAAACATTTGTTTCTTT
ATCCAAGTAGAGGCTGAAATGCTGAATTTCATGCACCATTTTTTCTCCAA
AGGCTTTTTAATTTCGAATCTTATAAAAGCAACAGAGTCTTACTTAAATG
TATCATGATAGACTTGAAACGACATACCGTTCCGTTCTTTTCTCAGATGT
ATGGTGAGAAATTAATTTTGACAGATCAATAGATTTCTATTCTGTTCTGT
TTACAAATACTTAACTTCCTGTTTTATGTGAAACTTAGGATGTGAACTTC
ACCAAAACAAGCATACTTGATCTGGTAGTGATACGTATTGAACAAATTTA
CTTAAATTTTCACTTAATTGTATTTTAAGCATTTTTAATTTTTAAATGTC
TGTTTGAATTTTACTTTACTAAATTGCTTCAATAAAATGGCAGTGTTGTG
GAAACGAATAATCTGCTTCATGACTCTTGATCATCCTTAAAATAAAATTC
CGAAGTGGATGTTATTCAAGTGGCGAATAAATCAACATTTTGCTACCGTT
TTATTTATTTCTCCTTATTCACACAGTACCCAGGGGTGTTTAACGGAGTT
GTTCCAAAACACTATGGTGATTAACTGTCATTTTGACACTTTTTCTGTTA
GACCCCTGTATGCACTTATTCCACCCTGGAGTAACTGTTTTCAGGACACA
AAATGGGGTACTACCCCTTAAAACGGATAATATTTCGGTCTGAAGCCAGT
TTTGTGATTGTGATTTTCCTTGGCCTTTTTGGCTGAGAAAAATCATTTTT
GTTAAAGCTTTTGAATCCAAAAAGNTCTTGGTCTTTTTGGCTGAGAAAAA
TCATTTTTTGTGGAAACTTTTGAATCCAAAAATATTGAAATGTACAAGAA
TTTACTCCACCAAAATTACTGCATACTGGTTTTAGCGTCTTTAGTACTTC
AGGTTATCCCGATTGGACCAACTGTTTCAGTCAGTATACCAGCACCGTAC
TAAGTGATACCATACTGTTCATATACTAGCTACGTGACCCCCTGCAGTGT
TATAGCACTCTTTACTTAGAGGGGGTGAGAGTGGTGATACCAACTTTTGA
AAACGGAATTAGAGGTTGTTCTAAGATCCTTGGTGTTAATTACCTTTTTA
CCATATCCACTTACAAAGCAACTGATTGTGACTGACTGACCGACAATACA
AGATAACTGACTGACAAATCAAAACAACTGACCGACGAAACAAACAGACT
TTTACCAACTATTTTGTAAGTTTGAAGTTTTTAACATGACAATTTAGTAT
ATATGTTTAAATACAGTAATGCAAGAATCAAAACCTTTTTTTAGCTATAA
ATTTGACATTTTCGCGACAAGATATTTTCGCGGAATTTATTTCTTAAATT
TAAAGGAAAGTTACTTACTTTAAATTTACTACTTTATTTACCTGATTATG
CTGATATGATGAATTTCGCGGAGTAAATTTTTGCGAGTGTCCAAATTTTA
TATTTTGCGGAATTTATCCTTGCGAATTTTCTATCTCAAAAAAATTAACG
GAACTAATTTTCCCGAAAAAGGGCTAATTCGCGAAAATAAATTCAGCAAA
AACTTCTTCAAATAAATAATTTTTTTCTCTGCATTCCATCATAGATGACA
GGGCTATCAATGGTGAATCGGAAATTGGAGAACCAGAAAACGAAGAACCA
TCTGCCAAAAAAACCAAGATCGTTAAGGTACCTTTATTTATAATTGAGCA
TATGCCAAGCAAACCTTGAGAAGGTGTTCTCATTTTTTCTCATTTGAAAC
AAATCAAAATGAAACATTATTTTTCTTTCCCAAAAAGAAACATAAGAATC
ATATGAGATAATACAACACCTAAACCTTGATAATGAAGATTTTCAAATAT
TGACAATTTGGCTTAAGAAAGATTGAATGTTTCTTTTATCAGAATAAGCA
TACTTTAAGCATTTTTAAGGCTCAAATTTTCAAAGCCTTAAGCATAATTC
GAGGATCAGCAAAAAATTGCTGATGCTTAAATTTAAAAAATCTGTAACAT
AATAATTAACGATTTTTCAGGTTATCATCCTAACTTTCTCGATGGTCAAT
TTTGATCTATTTTCCTAAGTACTTTATTTCACTCCTTCGTCTTTAATAAC
CGTTTGTCTATTTAGACTTGCCAACACTGTGAAGCACCAATAAGTATAAA
TGCTAGTCAGAAGTGTGCTAATTGTGGAAAAAAGCAAAACAAGGTTTGAA
ATATTTTAACATAAAAACCCTATTTATATTAATTTCATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAT
TAATTTTTGCGAGATAAATTTTGGTGGGATAAATTTTTGCGATATTTATT
TTAACGAATGAGAACTGAAAAGAATAGCATTTTCCTATACTTAGTTTTGG
GAATCATGGTATTGGTTTTCTGGTATAGATGATTTCGTTTTTTTACATTT
TACTTATGGCTCTGATTACAACTCTGAATCTAATTTCAATTCCCAAAGTC
ATTTTCTATTCTCTCGTCTTTTCACATTTGTTAATGACTTCAAAAGCTTA
TTAAAAGTGTGTATTCTAAGCCTTACAAATGCCTGCTATTTCTGGAAGGC
AATTCATCTTAACTGCTCAAATCATTTTTCGAGTTTTTAAAGACTATTTT
ACGTTTTGAATAAGTTTTCAATAACATTAAACGTAATAGCGAAATCATCT
ATTGCGAATGAAGACATGGACTTTAAAGAATCAATCATGGTATTAGGANT
CTTTTAAAGTGATTTTTCCATTAAAAAATTGTACATCGGATTTAGTATCT
CGAAAGTTTCTGCAGTGGGAACTAATCTTGTACATAGGGGGTATATACGT
ACTTTTTATTACATACTGCAGTTCGGTTTAAAATGCAGGCAGACTCTTTC
TATTTCTTGGAATTAGATAGTGTTGTTTAATTTTCAGGATCAATCGCTTC
TCTATCCGCGCAGTCCAACGTTGCACAGCCACGTTCGAATCCTACTGAGC
TGGAATTGCAAGATTCTTTTACGGGAGGTATAAAGTAANTTTAAAGACTA
TTTTACGTTTTGAATAAGTTTTCAATAACATTAAACGTAATAGCGAAATC
ATCTATTGCGAATGAAGACATGGACTTTAAAGAATCAATCATGGTATTAG
GAATCAATCTTCAATCTTCTTATTTTATTTATAGTGCTGCCAACATTGTA
TGAAACCCATGACTTCAAATGCAGCCAAACAATGCCATCTATGTGGTAAA
AGGCAGTTGACAAAGGCTGAAAGGATGGGAACCCTCGATGACGCTGGCCC
AAAAGGAACTATCGATCAAAGTGCTCAAAGATCCATAATTAGAACGAGAG
TCAGTTAAATCTTTATACGTATTTGTTNATTTGATAATATATCAATGTTT
CACATTTTGGAGTACATTAGGACAATAAATTGTAAGTTTTCTTTTCAGAT
TTCAAATCTGCTGATCATGCTAATAAAACCTTCTCTAANGCGTATTTGTT
TTAAGTTTAGCCAGGTGTCCTAAATCTGAGACGGTTGAATGGTTTGGAGC
TCCAGTAACATACCTTCCTTGTGATTTTAGATTAATGCACCATATTTTAT
CTGTGATAAATTTATTTAATAATTTCTTTTTTCCGGGCGTCAAGGATTCT
TTTTTATTATCCTTGGAATTTCAATCAAACCATACAACAATTTTTCTTTT
CTTTTTTCATCTTAGCTCAATCTCCTCCACAAAAAGGAAAATAATCATTG
TATCGTTCTTTACTTGAGTGGAGAACAACGGATACACGTGGACAGTTACG
CCACGCCAGGCTTTGCGAAGCATTTTATGGAGGGGNAAAATTATTTTCAT
TTGTTGACCCTTTTAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCT
CTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTA
CCGGCCAACCATCAACCTCANAAAGCATTTTATGGAGGGGCTATCAATCG
GTGGCAATCTTTTTGGAGATGTCATCAAAGACACCTTTAAAACTGCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072560TCONS_00072560Clytia hemisphaericatranscript
TCONS_00072559TCONS_00072559Clytia hemisphaericatranscript
TCONS_00072558TCONS_00072558Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072560-proteinTCONS_00072560-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:137833..142029 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.32	0.24	0.09	0	17.83	16.67	15.97	23.86	13.19	13.54	14.04	11.03	10.38	11.32	1.2	1.26	0.86	1.52	1.29	0.76	1.48	1.43	0.41	0.56	4.25	8.44	0.13	0.26	0.32	0.28