TCONS_00072558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072558
Unique NameTCONS_00072558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072558 ID=TCONS_00072558|Name=TCONS_00072558|organism=Clytia hemisphaerica|type=transcript|length=743bp
ACTGACTGACCGACAATACAAGATAACTGACtgacaaatcaaaacaactG
ACCGACGAAACAAACAGACTTTtaCCAACTATTTTATGACAGGGCTATCA
ATGGTGAATCGGAAATTGGAGAACCAGAAAACGAAGAACCATCTGCCAAA
AAAACCAAGATCGTTAAGACTTGCCAACACTGTGAAGCACCAATAAGTAT
AAATGCTAGTCAGAAGTGTGCTAATTGtggaaaaaagcaaaacaagTGCT
GCCAACATTGTATGAAACCCATGACTTCAAATGCAGCCAAACAATGCCAT
CTATGTGGTAAAAGGCAGTTGACAAAGGCTGAAAGGATGGGAACCCTCGA
TGACGCTGGCCCAAAAGGAACTATCGATCAAAGTGCTCAAAGATCCATAA
TTAGAACGAGACTCAATCTCCTccacaaaaaggaaaataatcaTTGTATC
GTTCTTTACTTGAGTGGAGAACAACGGATACACGTGGACAGTTACGCCAC
GCCAGGCTTTGCGAAGCATTTTATGGAGGGGNaaaattattttcatttgt
tgaCCCTTTTAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCTCTGT
CCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGG
CCAACCATCAACCTCANAAAGCATTTTATGGAGGGGCTATCAATCGGTGG
CAATCTTTTTGGAGATGTCATCAAAGACACCTTTAAAACTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_8:137833..140799-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072558 ID=TCONS_00072558|Name=TCONS_00072558|organism=Clytia hemisphaerica|type=transcript|length=2967bp|location=Sequence derived from alignment at scaffold_8:137833..140799- (Clytia hemisphaerica)
ACTGACTGACCGACAATACAAGATAACTGACTGACAAATCAAAACAACTG
ACCGACGAAACAAACAGACTTTTACCAACTATTTTGTAAGTTTGAAGTTT
TTAACATGACAATTTAGTATATATGTTTAAATACAGTAATGCAAGAATCA
AAACCTTTTTTTAGCTATAAATTTGACATTTTCGCGACAAGATATTTTCG
CGGAATTTATTTCTTAAATTTAAAGGAAAGTTACTTACTTTAAATTTACT
ACTTTATTTACCTGATTATGCTGATATGATGAATTTCGCGGAGTAAATTT
TTGCGAGTGTCCAAATTTTATATTTTGCGGAATTTATCCTTGCGAATTTT
CTATCTCAAAAAAATTAACGGAACTAATTTTCCCGAAAAAGGGCTAATTC
GCGAAAATAAATTCAGCAAAAACTTCTTCAAATAAATAATTTTTTTCTCT
GCATTCCATCATAGATGACAGGGCTATCAATGGTGAATCGGAAATTGGAG
AACCAGAAAACGAAGAACCATCTGCCAAAAAAACCAAGATCGTTAAGGTA
CCTTTATTTATAATTGAGCATATGCCAAGCAAACCTTGAGAAGGTGTTCT
CATTTTTTCTCATTTGAAACAAATCAAAATGAAACATTATTTTTCTTTCC
CAAAAAGAAACATAAGAATCATATGAGATAATACAACACCTAAACCTTGA
TAATGAAGATTTTCAAATATTGACAATTTGGCTTAAGAAAGATTGAATGT
TTCTTTTATCAGAATAAGCATACTTTAAGCATTTTTAAGGCTCAAATTTT
CAAAGCCTTAAGCATAATTCGAGGATCAGCAAAAAATTGCTGATGCTTAA
ATTTAAAAAATCTGTAACATAATAATTAACGATTTTTCAGGTTATCATCC
TAACTTTCTCGATGGTCAATTTTGATCTATTTTCCTAAGTACTTTATTTC
ACTCCTTCGTCTTTAATAACCGTTTGTCTATTTAGACTTGCCAACACTGT
GAAGCACCAATAAGTATAAATGCTAGTCAGAAGTGTGCTAATTGTGGAAA
AAAGCAAAACAAGGTTTGAAATATTTTAACATAAAAACCCTATTTATATT
AATTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATATTAATTTTTGCGAGATAAATTTTGGTGGGAT
AAATTTTTGCGATATTTATTTTAACGAATGAGAACTGAAAAGAATAGCAT
TTTCCTATACTTAGTTTTGGGAATCATGGTATTGGTTTTCTGGTATAGAT
GATTTCGTTTTTTTACATTTTACTTATGGCTCTGATTACAACTCTGAATC
TAATTTCAATTCCCAAAGTCATTTTCTATTCTCTCGTCTTTTCACATTTG
TTAATGACTTCAAAAGCTTATTAAAAGTGTGTATTCTAAGCCTTACAAAT
GCCTGCTATTTCTGGAAGGCAATTCATCTTAACTGCTCAAATCATTTTTC
GAGTTTTTAAAGACTATTTTACGTTTTGAATAAGTTTTCAATAACATTAA
ACGTAATAGCGAAATCATCTATTGCGAATGAAGACATGGACTTTAAAGAA
TCAATCATGGTATTAGGANTCTTTTAAAGTGATTTTTCCATTAAAAAATT
GTACATCGGATTTAGTATCTCGAAAGTTTCTGCAGTGGGAACTAATCTTG
TACATAGGGGGTATATACGTACTTTTTATTACATACTGCAGTTCGGTTTA
AAATGCAGGCAGACTCTTTCTATTTCTTGGAATTAGATAGTGTTGTTTAA
TTTTCAGGATCAATCGCTTCTCTATCCGCGCAGTCCAACGTTGCACAGCC
ACGTTCGAATCCTACTGAGCTGGAATTGCAAGATTCTTTTACGGGAGGTA
TAAAGTAANTTTAAAGACTATTTTACGTTTTGAATAAGTTTTCAATAACA
TTAAACGTAATAGCGAAATCATCTATTGCGAATGAAGACATGGACTTTAA
AGAATCAATCATGGTATTAGGAATCAATCTTCAATCTTCTTATTTTATTT
ATAGTGCTGCCAACATTGTATGAAACCCATGACTTCAAATGCAGCCAAAC
AATGCCATCTATGTGGTAAAAGGCAGTTGACAAAGGCTGAAAGGATGGGA
ACCCTCGATGACGCTGGCCCAAAAGGAACTATCGATCAAAGTGCTCAAAG
ATCCATAATTAGAACGAGAGTCAGTTAAATCTTTATACGTATTTGTTNAT
TTGATAATATATCAATGTTTCACATTTTGGAGTACATTAGGACAATAAAT
TGTAAGTTTTCTTTTCAGATTTCAAATCTGCTGATCATGCTAATAAAACC
TTCTCTAANGCGTATTTGTTTTAAGTTTAGCCAGGTGTCCTAAATCTGAG
ACGGTTGAATGGTTTGGAGCTCCAGTAACATACCTTCCTTGTGATTTTAG
ATTAATGCACCATATTTTATCTGTGATAAATTTATTTAATAATTTCTTTT
TTCCGGGCGTCAAGGATTCTTTTTTATTATCCTTGGAATTTCAATCAAAC
CATACAACAATTTTTCTTTTCTTTTTTCATCTTAGCTCAATCTCCTCCAC
AAAAAGGAAAATAATCATTGTATCGTTCTTTACTTGAGTGGAGAACAACG
GATACACGTGGACAGTTACGCCACGCCAGGCTTTGCGAAGCATTTTATGG
AGGGGNAAAATTATTTTCATTTGTTGACCCTTTTAATTTTAGATTCCTTT
CTTGAACCAACTCAAAACCTCTGTCCGTCTGTCCCTGTCCAGTCAATTTC
AACTAGGAGTTGCTCAACTACCGGCCAACCATCAACCTCANAAAGCATTT
TATGGAGGGGCTATCAATCGGTGGCAATCTTTTTGGAGATGTCATCAAAG
ACACCTTTAAAACTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045028XLOC_045028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072558-exon-scaffold_8-1575043694:140715..140799TCONS_00072558-exon-scaffold_8-1575043694:140715..140799Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1575043694:140253..140335TCONS_00072558-exon-scaffold_8-1575043694:140253..140335Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1575043694:139737..139814TCONS_00072558-exon-scaffold_8-1575043694:139737..139814Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1575043694:138531..138695TCONS_00072558-exon-scaffold_8-1575043694:138531..138695Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1575043694:137833..138164TCONS_00072558-exon-scaffold_8-1575043694:137833..138164Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1510915933:140715..140799TCONS_00072558-exon-scaffold_8-1510915933:140715..140799Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1510915933:140253..140335TCONS_00072558-exon-scaffold_8-1510915933:140253..140335Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1510915933:139737..139814TCONS_00072558-exon-scaffold_8-1510915933:139737..139814Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1510915933:138531..138695TCONS_00072558-exon-scaffold_8-1510915933:138531..138695Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1510915933:137833..138164TCONS_00072558-exon-scaffold_8-1510915933:137833..138164Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1491911889:140715..140799TCONS_00072558-exon-scaffold_8-1491911889:140715..140799Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1491911889:140253..140335TCONS_00072558-exon-scaffold_8-1491911889:140253..140335Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1491911889:139737..139814TCONS_00072558-exon-scaffold_8-1491911889:139737..139814Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1491911889:138531..138695TCONS_00072558-exon-scaffold_8-1491911889:138531..138695Clytia hemisphaericaexon
TCONS_00072558-exon-scaffold_8-1491911889:137833..138164TCONS_00072558-exon-scaffold_8-1491911889:137833..138164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:137833..140799 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0115272	8.80751	6.64538	7.64863	0	1.17576	4.08395	1.42178	0	0	0	0.766307	0	0.534307	0	0.382491	0	0	0	0	0.00140349	3.01138	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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