TCONS_00072559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072559
Unique NameTCONS_00072559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072559 ID=TCONS_00072559|Name=TCONS_00072559|organism=Clytia hemisphaerica|type=transcript|length=647bp
CGAACACTCAAAATCACAAGTCTGGGAAAACAACCAAACCAGCCCTTATC
CAAACCATCAATGGAAGATGACAGGGCTATCAATGGTGAATCGGAAATTG
GAGAACCAGAAAACGAAGAACCATCTGCCAAAAAAACCAAGATCGTTAAG
TGCTGCCAACATTGTATGAAACCCATGACTTCAAATGCAGCCAAACAATG
CCATCTATGTGGTAAAAGGCAGTTGACAAAGGCTGAAAGGATGGGAACCC
TCGATGACGCTGGCCCAAAAGGAACTATCGATCAAAGTGCTCAAAGATCC
ATAATTAGAACGAGACTCAATCTCCTccacaaaaaggaaaataatcaTTG
TATCGTTCTTTACTTGAGTGGAGAACAACGGATACACGTGGACAGTTACG
CCACGCCAGGCTTTGCGAAGCATTTTATGGAGGGGNaaaattattttcat
ttgttgaCCCTTTTAATTTTAGATTCCTTTCTTGAACCAACTCAAAACCT
CTGTCCGTCTGTCCCTGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTA
CCGGCCAACCATCAACCTCANAAAGCATTTTATGGAGGGGCTATCAATCG
GTGGCAATCTTTTTGGAGATGTCATCAAAGACACCTTTAAAACTGCA
Run BLAST on NCBI

transcript from alignment at scaffold_8:137833..142014-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072559 ID=TCONS_00072559|Name=TCONS_00072559|organism=Clytia hemisphaerica|type=transcript|length=4182bp|location=Sequence derived from alignment at scaffold_8:137833..142014- (Clytia hemisphaerica)
CGAACACTCAAAATCACAAGTCTGGGAAAACAACCAAACCAGCCCTTATC
CAAACCATCAATGGAAGGTAAACATTTGTTTCTTTATCCAAGTAGAGGCT
GAAATGCTGAATTTCATGCACCATTTTTTCTCCAAAGGCTTTTTAATTTC
GAATCTTATAAAAGCAACAGAGTCTTACTTAAATGTATCATGATAGACTT
GAAACGACATACCGTTCCGTTCTTTTCTCAGATGTATGGTGAGAAATTAA
TTTTGACAGATCAATAGATTTCTATTCTGTTCTGTTTACAAATACTTAAC
TTCCTGTTTTATGTGAAACTTAGGATGTGAACTTCACCAAAACAAGCATA
CTTGATCTGGTAGTGATACGTATTGAACAAATTTACTTAAATTTTCACTT
AATTGTATTTTAAGCATTTTTAATTTTTAAATGTCTGTTTGAATTTTACT
TTACTAAATTGCTTCAATAAAATGGCAGTGTTGTGGAAACGAATAATCTG
CTTCATGACTCTTGATCATCCTTAAAATAAAATTCCGAAGTGGATGTTAT
TCAAGTGGCGAATAAATCAACATTTTGCTACCGTTTTATTTATTTCTCCT
TATTCACACAGTACCCAGGGGTGTTTAACGGAGTTGTTCCAAAACACTAT
GGTGATTAACTGTCATTTTGACACTTTTTCTGTTAGACCCCTGTATGCAC
TTATTCCACCCTGGAGTAACTGTTTTCAGGACACAAAATGGGGTACTACC
CCTTAAAACGGATAATATTTCGGTCTGAAGCCAGTTTTGTGATTGTGATT
TTCCTTGGCCTTTTTGGCTGAGAAAAATCATTTTTGTTAAAGCTTTTGAA
TCCAAAAAGNTCTTGGTCTTTTTGGCTGAGAAAAATCATTTTTTGTGGAA
ACTTTTGAATCCAAAAATATTGAAATGTACAAGAATTTACTCCACCAAAA
TTACTGCATACTGGTTTTAGCGTCTTTAGTACTTCAGGTTATCCCGATTG
GACCAACTGTTTCAGTCAGTATACCAGCACCGTACTAAGTGATACCATAC
TGTTCATATACTAGCTACGTGACCCCCTGCAGTGTTATAGCACTCTTTAC
TTAGAGGGGGTGAGAGTGGTGATACCAACTTTTGAAAACGGAATTAGAGG
TTGTTCTAAGATCCTTGGTGTTAATTACCTTTTTACCATATCCACTTACA
AAGCAACTGATTGTGACTGACTGACCGACAATACAAGATAACTGACTGAC
AAATCAAAACAACTGACCGACGAAACAAACAGACTTTTACCAACTATTTT
GTAAGTTTGAAGTTTTTAACATGACAATTTAGTATATATGTTTAAATACA
GTAATGCAAGAATCAAAACCTTTTTTTAGCTATAAATTTGACATTTTCGC
GACAAGATATTTTCGCGGAATTTATTTCTTAAATTTAAAGGAAAGTTACT
TACTTTAAATTTACTACTTTATTTACCTGATTATGCTGATATGATGAATT
TCGCGGAGTAAATTTTTGCGAGTGTCCAAATTTTATATTTTGCGGAATTT
ATCCTTGCGAATTTTCTATCTCAAAAAAATTAACGGAACTAATTTTCCCG
AAAAAGGGCTAATTCGCGAAAATAAATTCAGCAAAAACTTCTTCAAATAA
ATAATTTTTTTCTCTGCATTCCATCATAGATGACAGGGCTATCAATGGTG
AATCGGAAATTGGAGAACCAGAAAACGAAGAACCATCTGCCAAAAAAACC
AAGATCGTTAAGGTACCTTTATTTATAATTGAGCATATGCCAAGCAAACC
TTGAGAAGGTGTTCTCATTTTTTCTCATTTGAAACAAATCAAAATGAAAC
ATTATTTTTCTTTCCCAAAAAGAAACATAAGAATCATATGAGATAATACA
ACACCTAAACCTTGATAATGAAGATTTTCAAATATTGACAATTTGGCTTA
AGAAAGATTGAATGTTTCTTTTATCAGAATAAGCATACTTTAAGCATTTT
TAAGGCTCAAATTTTCAAAGCCTTAAGCATAATTCGAGGATCAGCAAAAA
ATTGCTGATGCTTAAATTTAAAAAATCTGTAACATAATAATTAACGATTT
TTCAGGTTATCATCCTAACTTTCTCGATGGTCAATTTTGATCTATTTTCC
TAAGTACTTTATTTCACTCCTTCGTCTTTAATAACCGTTTGTCTATTTAG
ACTTGCCAACACTGTGAAGCACCAATAAGTATAAATGCTAGTCAGAAGTG
TGCTAATTGTGGAAAAAAGCAAAACAAGGTTTGAAATATTTTAACATAAA
AACCCTATTTATATTAATTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTAATTTTTGCGAGAT
AAATTTTGGTGGGATAAATTTTTGCGATATTTATTTTAACGAATGAGAAC
TGAAAAGAATAGCATTTTCCTATACTTAGTTTTGGGAATCATGGTATTGG
TTTTCTGGTATAGATGATTTCGTTTTTTTACATTTTACTTATGGCTCTGA
TTACAACTCTGAATCTAATTTCAATTCCCAAAGTCATTTTCTATTCTCTC
GTCTTTTCACATTTGTTAATGACTTCAAAAGCTTATTAAAAGTGTGTATT
CTAAGCCTTACAAATGCCTGCTATTTCTGGAAGGCAATTCATCTTAACTG
CTCAAATCATTTTTCGAGTTTTTAAAGACTATTTTACGTTTTGAATAAGT
TTTCAATAACATTAAACGTAATAGCGAAATCATCTATTGCGAATGAAGAC
ATGGACTTTAAAGAATCAATCATGGTATTAGGANTCTTTTAAAGTGATTT
TTCCATTAAAAAATTGTACATCGGATTTAGTATCTCGAAAGTTTCTGCAG
TGGGAACTAATCTTGTACATAGGGGGTATATACGTACTTTTTATTACATA
CTGCAGTTCGGTTTAAAATGCAGGCAGACTCTTTCTATTTCTTGGAATTA
GATAGTGTTGTTTAATTTTCAGGATCAATCGCTTCTCTATCCGCGCAGTC
CAACGTTGCACAGCCACGTTCGAATCCTACTGAGCTGGAATTGCAAGATT
CTTTTACGGGAGGTATAAAGTAANTTTAAAGACTATTTTACGTTTTGAAT
AAGTTTTCAATAACATTAAACGTAATAGCGAAATCATCTATTGCGAATGA
AGACATGGACTTTAAAGAATCAATCATGGTATTAGGAATCAATCTTCAAT
CTTCTTATTTTATTTATAGTGCTGCCAACATTGTATGAAACCCATGACTT
CAAATGCAGCCAAACAATGCCATCTATGTGGTAAAAGGCAGTTGACAAAG
GCTGAAAGGATGGGAACCCTCGATGACGCTGGCCCAAAAGGAACTATCGA
TCAAAGTGCTCAAAGATCCATAATTAGAACGAGAGTCAGTTAAATCTTTA
TACGTATTTGTTNATTTGATAATATATCAATGTTTCACATTTTGGAGTAC
ATTAGGACAATAAATTGTAAGTTTTCTTTTCAGATTTCAAATCTGCTGAT
CATGCTAATAAAACCTTCTCTAANGCGTATTTGTTTTAAGTTTAGCCAGG
TGTCCTAAATCTGAGACGGTTGAATGGTTTGGAGCTCCAGTAACATACCT
TCCTTGTGATTTTAGATTAATGCACCATATTTTATCTGTGATAAATTTAT
TTAATAATTTCTTTTTTCCGGGCGTCAAGGATTCTTTTTTATTATCCTTG
GAATTTCAATCAAACCATACAACAATTTTTCTTTTCTTTTTTCATCTTAG
CTCAATCTCCTCCACAAAAAGGAAAATAATCATTGTATCGTTCTTTACTT
GAGTGGAGAACAACGGATACACGTGGACAGTTACGCCACGCCAGGCTTTG
CGAAGCATTTTATGGAGGGGNAAAATTATTTTCATTTGTTGACCCTTTTA
ATTTTAGATTCCTTTCTTGAACCAACTCAAAACCTCTGTCCGTCTGTCCC
TGTCCAGTCAATTTCAACTAGGAGTTGCTCAACTACCGGCCAACCATCAA
CCTCANAAAGCATTTTATGGAGGGGCTATCAATCGGTGGCAATCTTTTTG
GAGATGTCATCAAAGACACCTTTAAAACTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045028XLOC_045028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072559-exon-scaffold_8-1575043694:141948..142014TCONS_00072559-exon-scaffold_8-1575043694:141948..142014Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1575043694:140253..140335TCONS_00072559-exon-scaffold_8-1575043694:140253..140335Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1575043694:138531..138695TCONS_00072559-exon-scaffold_8-1575043694:138531..138695Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1575043694:137833..138164TCONS_00072559-exon-scaffold_8-1575043694:137833..138164Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1510915933:141948..142014TCONS_00072559-exon-scaffold_8-1510915933:141948..142014Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1510915933:140253..140335TCONS_00072559-exon-scaffold_8-1510915933:140253..140335Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1510915933:138531..138695TCONS_00072559-exon-scaffold_8-1510915933:138531..138695Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1510915933:137833..138164TCONS_00072559-exon-scaffold_8-1510915933:137833..138164Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1491911889:141948..142014TCONS_00072559-exon-scaffold_8-1491911889:141948..142014Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1491911889:140253..140335TCONS_00072559-exon-scaffold_8-1491911889:140253..140335Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1491911889:138531..138695TCONS_00072559-exon-scaffold_8-1491911889:138531..138695Clytia hemisphaericaexon
TCONS_00072559-exon-scaffold_8-1491911889:137833..138164TCONS_00072559-exon-scaffold_8-1491911889:137833..138164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:137833..142014 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323998	0.236962	0.0917117	0	7.9262	7.8596	7.36917	10.9072	4.20076	3.78464	5.95962	3.6229	2.9305	4.42634	0.312485	0.498499	0	0.351752	0.282644	0.374076	0.598909	0.772909	0	0	2.04357	2.67222	0.130606	0.262095	0	0.283278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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